Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001866 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.6e-167 591.3 326 100.0
CSS0021337 Camellia sinensis var. sinensis HOM05D003923 ORTHO05D004553 4.1e-107 392.1 339 69.9
Haze_22250 Corylus avellana HOM05D003923 ORTHO05D004553 1.2e-98 364.0 353 63.7
QL12p036407 Quercus lobata HOM05D003923 ORTHO05D004553 1.6e-98 363.6 353 62.9
Hma1.2p1_0120F.1_g057290 Hydrangea macrophylla HOM05D003923 ORTHO05D004553 4.6e-98 362.1 345 67.0
Thecc.08G109100 Theobroma cacao HOM05D003923 ORTHO05D004553 4.3e-96 355.5 343 62.7
Cfa013623 Carpinus fangiana HOM05D003923 ORTHO05D004553 4.7e-95 352.1 356 60.1
CiPaw.07G181200 Carya illinoinensis HOM05D003923 ORTHO05D004553 1.4e-94 350.5 350 60.9
Potri.005G166400 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.2e-93 347.4 352 64.2
Gohir.A05G227800 Gossypium hirsutum HOM05D003923 ORTHO05D004553 1.5e-93 347.1 350 60.3
Rhsim06G0083500 Rhododendron simsii HOM05D003923 ORTHO05D004553 1.5e-93 347.1 361 62.9
Gorai.009G238400 Gossypium raimondii HOM05D003923 ORTHO05D004553 4.4e-93 345.5 346 59.8
Gohir.D05G230200 Gossypium hirsutum HOM05D003923 ORTHO05D004553 5.8e-93 345.1 344 59.3
Lalb_Chr08g0241981 Lupinus albus HOM05D003923 ORTHO05D004553 7.5e-93 344.7 366 59.3
Cpa.g.sc36.119 Carica papaya HOM05D003923 ORTHO05D004553 4.9e-92 342.0 348 62.1
Oeu024542.1 Olea europaea HOM05D003923 ORTHO05D004553 1.9e-91 340.1 336 61.9
TWI56G0888 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 2.4e-91 339.7 361 61.5
Manes.18G068600 Manihot esculenta HOM05D003923 ORTHO05D004553 3.2e-91 339.3 367 59.1
Sabra05G0125400 Salix brachista HOM05D003923 ORTHO05D004553 7.1e-91 338.2 354 61.6
Oeu061492.1 Olea europaea HOM05D003923 ORTHO05D004553 2.7e-90 336.3 355 63.4
CiPaw.08G044000 Carya illinoinensis HOM05D003923 ORTHO05D004553 6.0e-90 335.1 346 62.4
Potri.002G094700 Populus trichocarpa HOM05D003923 ORTHO05D004553 1.5e-88 330.5 351 59.5
TWI12G0076 Tripterygium wilfordii HOM05D003923 ORTHO05D004553 4.3e-88 328.9 361 59.6
Cc10_g07380 Coffea canephora HOM05D003923 ORTHO05D004553 9.5e-88 327.8 377 59.2
Nn5g29082 Nelumbo nucifera HOM05D003923 ORTHO05D004553 2.8e-87 326.2 341 58.1
Prupe.1G514400 Prunus persica HOM05D003923 ORTHO05D004553 8.1e-87 324.7 373 55.5
Phvul.009G029900 Phaseolus vulgaris HOM05D003923 ORTHO05D004553 3.1e-86 322.8 353 58.4
Duzib041G0577 Durio zibethinus HOM05D003923 ORTHO05D004553 1.3e-84 317.4 348 57.2
MD15G1366500 Malus domestica HOM05D003923 ORTHO05D004553 4.9e-84 315.5 382 55.0
TAR628G1119 Trochodendron aralioides HOM05D003923 ORTHO05D004553 1.4e-83 313.9 342 61.7
MD08G1180900 Malus domestica HOM05D003923 ORTHO05D004553 1.9e-83 313.5 370 53.8
Medtr3g074210 Medicago truncatula HOM05D003923 ORTHO05D004553 4.1e-83 312.4 364 56.3
Peaxi162Scf00041g01015 Petunia axillaris HOM05D003923 ORTHO05D004553 1.2e-82 310.8 359 57.9
Lalb_Chr11g0065491 Lupinus albus HOM05D003923 ORTHO05D004553 3.5e-82 309.3 359 54.0
Gohir.D06G037500 Gossypium hirsutum HOM05D003923 ORTHO05D004553 2.3e-81 306.6 347 59.4
FAN04G1592 Fragaria x ananassa HOM05D003923 ORTHO05D004553 3.9e-81 305.8 366 53.8
Gorai.010G042400 Gossypium raimondii HOM05D003923 ORTHO05D004553 8.7e-81 304.7 347 59.4
FvH4_5g37730 Fragaria vesca HOM05D003923 ORTHO05D004553 1.1e-80 304.3 366 54.4
FAN13G1718 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-80 304.3 365 50.1
FAN18G1313 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.1e-80 304.3 366 52.5
FAN08G0462 Fragaria x ananassa HOM05D003923 ORTHO05D004553 1.5e-80 303.9 365 50.1
Duzib093G1759 Durio zibethinus HOM05D003923 ORTHO05D004553 2.5e-80 303.1 362 58.8
MSTRG.24466 Avicennia marina HOM05D003923 ORTHO05D004553 3.3e-80 302.8 356 56.5
COL.COLO4_16427 Corchorus olitorius HOM05D003923 ORTHO05D004553 3.3e-80 302.8 337 57.6
Lj1g0006284 Lotus japonicus HOM05D003923 ORTHO05D004553 3.3e-80 302.8 365 53.4
Gohir.A06G036700 Gossypium hirsutum HOM05D003923 ORTHO05D004553 6.2e-79 298.5 347 53.3
RcHm_v2.0_Chr7g0239471 Rosa chinensis HOM05D003923 ORTHO05D004553 4.0e-78 295.8 367 53.1
TPR.G35206 Trifolium pratense HOM05D003923 ORTHO05D004553 2.6e-77 293.1 358 51.1
Psat5g138360 Pisum sativum HOM05D003923 ORTHO05D004553 5.8e-77 292.0 367 53.7
Ciclev10001646m.g Citrus clementina HOM05D003923 ORTHO05D004553 1.3e-76 290.8 366 54.9
CANSAT25G0676 Cannabis sativa HOM05D003923 ORTHO05D004553 2.9e-76 289.7 359 56.5
CAN.G1261.5 Capsicum annuum HOM05D003923 ORTHO05D004553 2.9e-76 289.7 345 55.4
Actinidia30763 Actinidia chinensis HOM05D003923 ORTHO05D004553 6.4e-76 288.5 326 55.8
Glyma.06G104700 Glycine max HOM05D003923 ORTHO05D004553 6.4e-76 288.5 362 53.9
ECA232G2894 Erigeron canadensis HOM05D003923 ORTHO05D004553 1.9e-75 287.0 364 50.8
vmacro21241 Vaccinium macrocarpon HOM05D003923 ORTHO05D004553 1.9e-75 287.0 345 54.8
Eucgr.F02437 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.1e-74 283.5 348 52.0
EL10Ac1g01249 Beta vulgaris HOM05D003923 ORTHO05D004553 2.7e-74 283.1 346 51.7
HanXRQChr15g0491381 Helianthus annuus HOM05D003923 ORTHO05D004553 3.5e-74 282.7 363 52.9
BcaB03g15981 Brassica carinata HOM05D003923 ORTHO05D004553 6.0e-74 282.0 326 54.6
Peaxi162Scf00160g00147 Petunia axillaris HOM05D003923 ORTHO05D004553 6.0e-74 282.0 333 54.1
Lsat_1_v5_gn_9_43840 Lactuca sativa HOM05D003923 ORTHO05D004553 2.3e-73 280.0 348 51.7
Sabra02G0074700 Salix brachista HOM05D003923 ORTHO05D004553 5.1e-73 278.9 357 52.7
BcaC08g47387 Brassica carinata HOM05D003923 ORTHO05D004553 1.1e-72 277.7 339 52.2
C06p52080 Brassica napus HOM05D003923 ORTHO05D004553 1.1e-72 277.7 339 52.2
BolC6t40231H Brassica oleracea HOM05D003923 ORTHO05D004553 1.1e-72 277.7 339 52.2
PGSC0003DMG400008539 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.6e-71 273.9 329 54.7
Eucgr.F00301 Eucalyptus grandis HOM05D003923 ORTHO05D004553 2.8e-71 273.1 274 58.4
PSO210G6507 Papaver somniferum HOM05D003923 ORTHO05D004553 3.6e-71 272.7 373 50.4
Nitab4.5_0000421g0080 Nicotiana tabacum HOM05D003923 ORTHO05D004553 8.1e-71 271.6 339 53.7
Sc23g0000110 Simmondsia chinensis HOM05D003923 ORTHO05D004553 8.1e-71 271.6 353 50.1
MBI02_g08739_MAGBIO Magnolia biondii HOM05D003923 ORTHO05D004553 2.4e-70 270.0 336 55.1
PSO447G0218 Papaver somniferum HOM05D003923 ORTHO05D004553 2.4e-70 270.0 372 49.2
Solyc12g056990.1 Solanum lycopersicum HOM05D003923 ORTHO05D004553 4.0e-70 269.2 333 49.8
Aqoxy5G01999 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 9.0e-70 268.1 350 50.0
ClCG11G015440 Citrullus lanatus HOM05D003923 ORTHO05D004553 2.0e-69 266.9 344 47.7
ECA246G1087 Erigeron canadensis HOM05D003923 ORTHO05D004553 2.6e-69 266.5 338 52.1
PGR042G1650 Punica granatum HOM05D003923 ORTHO05D004553 3.4e-69 266.2 347 49.9
Manes.02G153800 Manihot esculenta HOM05D003923 ORTHO05D004553 1.7e-68 263.8 340 53.8
MELO3C010430.2 Cucumis melo HOM05D003923 ORTHO05D004553 4.9e-68 262.3 327 48.3
THA.LOC104809709 Tarenaya hassleriana HOM05D003923 ORTHO05D004553 2.4e-67 260.0 371 49.6
BcaB05g25102 Brassica carinata HOM05D003923 ORTHO05D004553 1.6e-66 257.3 331 48.0
CsaV3_4G028650 Cucumis sativus L. HOM05D003923 ORTHO05D004553 2.1e-66 256.9 334 50.6
Duzib116G0286 Durio zibethinus HOM05D003923 ORTHO05D004553 4.6e-66 255.8 274 56.9
Nitab4.5_0000675g0060 Nicotiana tabacum HOM05D003923 ORTHO05D004553 7.9e-66 255.0 344 52.6
PGSC0003DMG400009479 Solanum tuberosum HOM05D003923 ORTHO05D004553 1.3e-65 254.2 359 52.9
Ca_15243_v3 Cicer arietinum L. HOM05D003923 ORTHO05D004553 3.9e-65 252.7 368 51.4
Glyma.04G103500 Glycine max HOM05D003923 ORTHO05D004553 5.1e-65 252.3 334 49.4
Nitab4.5_0002243g0010 Nicotiana tabacum HOM05D003923 ORTHO05D004553 6.7e-65 251.9 289 52.6
Nitab4.5_0001992g0040 Nicotiana tabacum HOM05D003923 ORTHO05D004553 2.5e-64 250.0 338 53.3
VMungo1309G2192 Vigna mungo HOM05D003923 ORTHO05D004553 4.3e-64 249.2 356 50.0
Migut.N02906 Erythranthe guttata HOM05D003923 ORTHO05D004553 2.1e-63 246.9 365 46.6
Sopen04g029130 Solanum pennellii HOM05D003923 ORTHO05D004553 3.7e-63 246.1 363 50.7
MSTRG.22149 Avicennia marina HOM05D003923 ORTHO05D004553 4.8e-63 245.7 347 51.0
Ah.05g170190 Amaranthus hybridus HOM05D003923 ORTHO05D004553 2.0e-61 240.4 352 47.2
AL2G38420 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 1.3e-60 237.7 344 51.2
Lalb_Chr17g0344141 Lupinus albus HOM05D003923 ORTHO05D004553 1.7e-60 237.3 346 48.0
Sopen00g003260 Solanum pennellii HOM05D003923 ORTHO05D004553 8.4e-60 235.0 282 49.6
A07p43360 Brassica napus HOM05D003923 ORTHO05D004553 2.4e-59 233.4 332 48.8
Aa31LG4G8160 Aethionema arabicum HOM05D003923 ORTHO05D004553 3.2e-59 233.0 344 48.0
CARHR071570 Cardamine hirsuta HOM05D003923 ORTHO05D004553 7.1e-59 231.9 355 50.1
BraA02t07205Z Brassica rapa HOM05D003923 ORTHO05D004553 1.6e-58 230.7 330 45.5
BraA07t31856Z Brassica rapa HOM05D003923 ORTHO05D004553 2.7e-58 229.9 326 46.0
BcaC03g15795 Brassica carinata HOM05D003923 ORTHO05D004553 3.5e-58 229.6 330 45.5
C02p35410 Brassica napus HOM05D003923 ORTHO05D004553 3.5e-58 229.6 330 45.2
A02p22020 Brassica napus HOM05D003923 ORTHO05D004553 4.6e-58 229.2 331 45.0
BolC2t09553H Brassica oleracea HOM05D003923 ORTHO05D004553 7.9e-58 228.4 330 45.2
Sp5g33250 Schrenkiella parvula HOM05D003923 ORTHO05D004553 3.9e-57 226.1 339 49.3
BcaB02g07147 Brassica carinata HOM05D003923 ORTHO05D004553 8.7e-57 224.9 329 45.3
AT1G78110 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 4.3e-56 222.6 343 48.1
Carub.0002s2500 Capsella rubella HOM05D003923 ORTHO05D004553 5.6e-56 222.2 347 47.0
Sed0005628 Sechium edule HOM05D003923 ORTHO05D004553 6.2e-55 218.8 343 47.8
Solyc04g072940.4 Solanum lycopersicum HOM05D003923 ORTHO05D004553 6.2e-55 218.8 323 51.7
Dinv13027 Davidia involucrata HOM05D003923 ORTHO05D004553 3.1e-54 216.5 221 65.2
Aqoxy6G00599 Aquilegia oxysepala HOM05D003923 ORTHO05D004553 6.9e-54 215.3 340 44.7
Carub.0001s2178 Capsella rubella HOM05D003923 ORTHO05D004553 6.9e-54 215.3 333 47.7
Lalb_Chr04g0253191 Lupinus albus HOM05D003923 ORTHO05D004553 7.6e-53 211.8 336 45.2
Sp1g19740 Schrenkiella parvula HOM05D003923 ORTHO05D004553 1.0e-52 211.5 336 44.0
CARHR022580 Cardamine hirsuta HOM05D003923 ORTHO05D004553 1.3e-52 211.1 333 44.7
Atru.chr13.1213 Acer truncatum HOM05D003923 ORTHO05D004553 1.7e-52 210.7 291 48.8
AL1G35680 Arabidopsis lyrata HOM05D003923 ORTHO05D004553 2.9e-52 209.9 338 43.8
unitig_21.g20601 Utricularia gibba HOM05D003923 ORTHO05D004553 4.9e-52 209.1 333 45.6
BcaB07g32243 Brassica carinata HOM05D003923 ORTHO05D004553 6.5e-52 208.8 343 41.7
BcaC05g26150 Brassica carinata HOM05D003923 ORTHO05D004553 6.5e-52 208.8 343 41.7
C05p21350 Brassica napus HOM05D003923 ORTHO05D004553 6.5e-52 208.8 343 41.7
BraA09t39730Z Brassica rapa HOM05D003923 ORTHO05D004553 6.5e-52 208.8 335 42.7
Thhalv10018798m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 6.5e-52 208.8 359 45.7
HanXRQChr05g0162921 Helianthus annuus HOM05D003923 ORTHO05D004553 1.1e-51 208.0 367 43.1
AT1G22230 Arabidopsis thaliana HOM05D003923 ORTHO05D004553 3.2e-51 206.5 332 43.1
A09p42540 Brassica napus HOM05D003923 ORTHO05D004553 4.2e-51 206.1 336 42.3
Migut.O00455 Erythranthe guttata HOM05D003923 ORTHO05D004553 4.2e-51 206.1 239 50.6
BolC5t30833H Brassica oleracea HOM05D003923 ORTHO05D004553 7.1e-51 205.3 335 42.4
BraA07t30411Z Brassica rapa HOM05D003923 ORTHO05D004553 7.1e-51 205.3 356 46.3
MELO3C011359.2 Cucumis melo HOM05D003923 ORTHO05D004553 6.0e-50 202.2 350 48.0
CsaV3_2G024220 Cucumis sativus L. HOM05D003923 ORTHO05D004553 7.9e-50 201.8 353 47.0
A07p27700 Brassica napus HOM05D003923 ORTHO05D004553 3.0e-49 199.9 356 45.5
AUR62027732 Chenopodium quinoa HOM05D003923 ORTHO05D004553 1.9e-48 197.2 192 55.7
BcaC08g45438 Brassica carinata HOM05D003923 ORTHO05D004553 2.5e-48 196.8 356 45.2
C06p30680 Brassica napus HOM05D003923 ORTHO05D004553 2.5e-48 196.8 356 45.2
BolC6t38232H Brassica oleracea HOM05D003923 ORTHO05D004553 2.5e-48 196.8 356 45.2
ClCG08G011040 Citrullus lanatus HOM05D003923 ORTHO05D004553 4.3e-48 196.1 349 45.6
BcaB07g32245 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-46 190.7 339 42.5
Sed0003612 Sechium edule HOM05D003923 ORTHO05D004553 9.0e-46 188.3 253 45.5
PSO781G0128 Papaver somniferum HOM05D003923 ORTHO05D004553 1.0e-44 184.9 408 36.3
A07p14630 Brassica napus HOM05D003923 ORTHO05D004553 1.3e-44 184.5 318 41.8
ATR0564G364 Amborella trichopoda HOM05D003923 ORTHO05D004553 5.0e-44 182.6 340 37.9
BraA07t29207Z Brassica rapa HOM05D003923 ORTHO05D004553 2.5e-43 180.3 317 41.3
Thhalv10008264m.g Eutrema salsugineum HOM05D003923 ORTHO05D004553 1.2e-42 177.9 332 38.0
PSO541G2428 Papaver somniferum HOM05D003923 ORTHO05D004553 2.7e-42 176.8 420 35.2
Aa31LG7G6170 Aethionema arabicum HOM05D003923 ORTHO05D004553 1.4e-41 174.5 328 38.4
Zm00001eb255200 Zea mays HOM05D003923 ORTHO05D004553 1.4e-41 174.5 333 39.0
Zm00001eb098670 Zea mays HOM05D003923 ORTHO05D004553 2.5e-40 170.2 368 37.2
SalBow7G0529 Salvia bowleyana HOM05D003923 ORTHO05D004553 3.3e-40 169.9 302 44.4
BcaC06g34942 Brassica carinata HOM05D003923 ORTHO05D004553 8.2e-39 165.2 318 38.4
Zm00001eb194180 Zea mays HOM05D003923 ORTHO05D004553 5.3e-38 162.5 348 37.1
Zm00001eb311240 Zea mays HOM05D003923 ORTHO05D004553 4.5e-37 159.5 346 37.9
unitig_744.g24093 Utricularia gibba HOM05D003923 ORTHO05D004553 1.7e-36 157.5 337 36.8
C07p21520 Brassica napus HOM05D003923 ORTHO05D004553 2.2e-36 157.1 317 38.2
Sed0022190 Sechium edule HOM05D003923 ORTHO05D004553 7.2e-35 152.1 256 43.8
SEGI_41423 Sequoiadendron giganteum HOM05D003923 ORTHO05D004553 9.7e-32 141.7 319 34.8
ATR0122G028 Amborella trichopoda HOM05D003923 ORTHO05D004553 8.2e-31 138.7 319 33.9
CDE12G0356 Ceratophyllum demersum HOM05D003923 ORTHO05D004553 2.5e-27 127.1 323 36.8
GSVIVG01009013001 Vitis vinifera HOM05D003923 ORTHO05D004553 2.0e-24 117.5 187 49.2
Os02g0753400 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 4.4e-24 116.3 341 36.7
HPP92_002331 Vanilla planifolia HOM05D003923 ORTHO05D004553 7.4e-24 115.5 335 34.9
BolC7t42678H Brassica oleracea HOM05D003923 ORTHO05D004553 1.7e-23 114.4 190 43.2
Os09g0370000 Oryza sativa ssp. japonica HOM05D003923 ORTHO05D004553 1.6e-18 97.8 354 37.0
unitig_578.g16204 Utricularia gibba HOM05D003923 ORTHO05D004553 8.8e-17 92.0 195 37.4
ATR0153G027 Amborella trichopoda HOM05D003923 ORTHO05D004553 1.7e-15 87.8 157 38.2
A07p43420 Brassica napus HOM05D003923 ORTHO05D004553 4.1e-14 83.2 112 51.8
Actinidia27197 Actinidia chinensis HOM05D003923 ORTHO05D004553 8.5e-12 75.5 93 52.7
Aqoxy4G00578 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 7.2e-11 72.4 276 28.6
Nn1g04275 Nelumbo nucifera HOM05D004118 ORTHO05D004686 8.0e-10 68.9 289 27.3
ATR0602G295 Amborella trichopoda HOM05D004118 ORTHO05D004686 1.4e-09 68.2 301 27.6
CsaV3_3G019580 Cucumis sativus L. HOM05D004118 ORTHO05D004686 1.4e-09 68.2 318 25.2
SEGI_08873 Sequoiadendron giganteum HOM05D004118 ORTHO05D004686 2.3e-09 67.4 248 27.8
MELO3C019394.2 Cucumis melo HOM05D004118 ORTHO05D004686 5.2e-09 66.2 316 25.3
Lalb_Chr20g0109451 Lupinus albus HOM05D004118 ORTHO05D004686 1.3e-07 61.6 296 26.7
Peaxi162Scf00069g00197 Petunia axillaris HOM05D004118 ORTHO05D004686 1.7e-07 61.2 289 24.6
BcaB03g11901 Brassica carinata HOM05D003923 ORTHO05D004553 1.8e-06 57.8 48 52.1
Aqoxy1G02262 Aquilegia oxysepala HOM05D004118 ORTHO05D004686 3.1e-06 57.0 312 27.2
Cfa020624 Carpinus fangiana HOM05D004118 ORTHO05D004686 9.1e-06 55.5 314 25.8
Haze_09381 Corylus avellana HOM05D004118 ORTHO05D004686 9.1e-06 55.5 316 25.3
Prupe.4G173200 Prunus persica HOM05D004118 ORTHO05D004686 9.1e-06 55.5 340 25.0
PGR083G2344 Punica granatum HOM05D004118 ORTHO05D004686 9.1e-06 55.5 298 25.2
QL08p023555 Quercus lobata HOM05D004118 ORTHO05D004686 9.1e-06 55.5 317 24.0


User provided reference genes

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