Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001859 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-105 386.0 216 100.0
CSS0027604 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.0e-105 386.0 216 100.0
CSS0016540 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 7.7e-94 347.4 198 99.5
CSS0022133 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.2e-88 329.3 201 94.5
CSS0022243 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.1e-75 284.6 197 85.8
CSS0042721 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.8e-74 283.1 197 85.3
CSS0004114 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 2.3e-74 282.7 197 85.3
CSS0009085 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 5.2e-74 281.6 197 84.8
CSS0017523 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 6.8e-74 281.2 197 84.8
CSS0049827 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.5e-73 280.0 197 84.8
CSS0019011 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 3.6e-67 258.8 197 80.7
Dinv04407 Davidia involucrata HOM05D004683 ORTHO05D005388 1.8e-58 229.9 204 73.0
CSS0018655 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 8.3e-56 221.1 198 69.2
CSS0042800 Camellia sinensis var. sinensis HOM05D004683 ORTHO05D005388 1.4e-55 220.3 198 70.2
Actinidia11898 Actinidia chinensis HOM05D004683 ORTHO05D005388 5.2e-50 201.8 199 66.3
Actinidia39280 Actinidia chinensis HOM05D004683 ORTHO05D005388 2.6e-49 199.5 199 64.8
TAR626G1909 Trochodendron aralioides HOM05D004683 ORTHO05D005388 4.4e-49 198.7 203 64.5
TAR341G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.9e-47 193.4 203 61.6
TAR485G0001 Trochodendron aralioides HOM05D004683 ORTHO05D005388 1.9e-47 193.4 203 61.6
Nn1g07478 Nelumbo nucifera HOM05D004683 ORTHO05D005388 1.0e-45 187.6 203 63.1
Hma1.2p1_0657F.1_g196900 Hydrangea macrophylla HOM05D004683 ORTHO05D005388 4.3e-44 182.2 198 64.1
Lj2A259T33 Lonicera japonica HOM05D004683 ORTHO05D005388 1.2e-43 180.6 200 59.0
Sed0018998 Sechium edule HOM05D004683 ORTHO05D005388 2.0e-41 173.3 203 57.1
MELO3C025532.2 Cucumis melo HOM05D004683 ORTHO05D005388 7.6e-41 171.4 221 52.9
ClCG01G010700 Citrullus lanatus HOM05D004683 ORTHO05D005388 1.7e-40 170.2 203 56.7
Rhsim02G0091200 Rhododendron simsii HOM05D004683 ORTHO05D005388 8.4e-40 167.9 205 58.0
CsaV3_1G015800 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-39 166.8 203 55.7
CsaV3_UNG061480 Cucumis sativus L. HOM05D004683 ORTHO05D005388 1.9e-39 166.8 203 55.7
MBI19_g44082_MAGBIO Magnolia biondii HOM05D004683 ORTHO05D005388 2.4e-39 166.4 202 56.9
CANSAT56G4109 Cannabis sativa HOM05D004683 ORTHO05D005388 5.4e-39 165.2 206 55.3
RcHm_v2.0_Chr5g0000761 Rosa chinensis HOM05D004683 ORTHO05D005388 3.5e-38 162.5 209 54.1
Aqoxy4G02236 Aquilegia oxysepala HOM05D004683 ORTHO05D005388 2.3e-37 159.8 208 52.9
Prupe.4G006700 Prunus persica HOM05D004683 ORTHO05D005388 1.9e-36 156.8 213 53.1
CiPaw.09G105900 Carya illinoinensis HOM05D004683 ORTHO05D005388 8.1e-35 151.4 210 54.3
ATR0624G003 Amborella trichopoda HOM05D004683 ORTHO05D005388 1.4e-34 150.6 199 53.8
Gorai.011G008800 Gossypium raimondii HOM05D004683 ORTHO05D005388 1.4e-34 150.6 195 52.8
Potri.006G017200 Populus trichocarpa HOM05D004683 ORTHO05D005388 2.4e-34 149.8 203 51.7
PSO675G6369 Papaver somniferum HOM05D004683 ORTHO05D005388 3.1e-34 149.4 208 53.4
Gohir.A10G008300 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.3e-34 148.7 195 52.3
Gohir.D10G008100 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.3e-34 148.7 195 52.8
Duzib160G0680 Durio zibethinus HOM05D004683 ORTHO05D005388 6.9e-34 148.3 197 54.3
MD10G1336700 Malus domestica HOM05D004683 ORTHO05D005388 1.2e-33 147.5 213 51.2
PSO541G4951 Papaver somniferum HOM05D004683 ORTHO05D005388 1.5e-33 147.1 208 52.9
Manes.09G081701 Manihot esculenta HOM05D004683 ORTHO05D005388 4.5e-33 145.6 202 52.5
GSVIVG01007216001 Vitis vinifera HOM05D004683 ORTHO05D005388 4.5e-33 145.6 125 68.8
Potri.016G008400 Populus trichocarpa HOM05D004683 ORTHO05D005388 7.6e-33 144.8 203 50.7
Sabra16G0012500 Salix brachista HOM05D004683 ORTHO05D005388 7.6e-33 144.8 203 51.7
Sabra06G0012200 Salix brachista HOM05D004683 ORTHO05D005388 9.9e-33 144.4 202 52.0
Duzib235G0361 Durio zibethinus HOM05D004683 ORTHO05D005388 2.2e-32 143.3 196 51.0
vmacro15736 Vaccinium macrocarpon HOM05D004683 ORTHO05D005388 2.9e-32 142.9 208 53.8
TWI38G0781 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.1e-31 141.0 200 52.0
Lsat_1_v5_gn_7_14120 Lactuca sativa HOM05D004683 ORTHO05D005388 1.4e-31 140.6 227 51.5
Sc05g0009730 Simmondsia chinensis HOM05D004683 ORTHO05D005388 1.9e-31 140.2 205 51.2
TWI63G0041 Tripterygium wilfordii HOM05D004683 ORTHO05D005388 1.9e-31 140.2 196 51.5
Cpa.g.sc27.252 Carica papaya HOM05D004683 ORTHO05D005388 2.4e-31 139.8 200 52.0
Sabra16G0012800 Salix brachista HOM05D004683 ORTHO05D005388 2.4e-31 139.8 215 48.8
Phvul.006G141000 Phaseolus vulgaris HOM05D004683 ORTHO05D005388 5.4e-31 138.7 194 51.5
Cfa000066 Carpinus fangiana HOM05D004683 ORTHO05D005388 7.1e-31 138.3 206 50.0
COL.COLO4_15259 Corchorus olitorius HOM05D004683 ORTHO05D005388 4.6e-30 135.6 197 49.7
Lj6g0001835 Lotus japonicus HOM05D004683 ORTHO05D005388 6.0e-30 135.2 201 50.7
CDE06G0298 Ceratophyllum demersum HOM05D000165 ORTHO05D005388 1.3e-29 134.0 188 51.6
TPR.G10575 Trifolium pratense HOM05D004683 ORTHO05D005388 1.3e-29 134.0 198 52.0
Medtr2g026550 Medicago truncatula HOM05D004683 ORTHO05D005388 1.8e-29 133.7 201 51.7
FvH4_3g00551 Fragaria vesca HOM05D004683 ORTHO05D005388 2.3e-29 133.3 196 52.0
Nitab4.5_0001668g0040 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.3e-29 133.3 210 51.0
arahy.Tifrunner.gnm1.ann1.L4TARN Arachis hypogaea HOM05D004683 ORTHO05D005388 3.9e-29 132.5 200 48.0
Lsat_1_v5_gn_0_24381 Lactuca sativa HOM05D004683 ORTHO05D005388 3.9e-29 132.5 227 46.3
QL05p068796 Quercus lobata HOM05D004683 ORTHO05D005388 3.9e-29 132.5 201 49.3
Ah.14g087460 Amaranthus hybridus HOM05D004683 ORTHO05D005388 5.1e-29 132.1 213 46.5
Thecc.06G237400 Theobroma cacao HOM05D004683 ORTHO05D005388 5.1e-29 132.1 191 49.2
Hund21139 Selenicereus undatus HOM05D004683 ORTHO05D005388 1.1e-28 131.0 207 49.3
Ciclev10017876m.g Citrus clementina HOM05D004683 ORTHO05D005388 1.5e-28 130.6 202 47.0
EL10Ac8g20240 Beta vulgaris HOM05D004683 ORTHO05D005388 1.9e-28 130.2 196 48.5
arahy.Tifrunner.gnm1.ann1.5M71YA Arachis hypogaea HOM05D004683 ORTHO05D005388 3.3e-28 129.4 200 47.5
AUR62012829 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.3e-28 129.0 198 48.0
AUR62021828 Chenopodium quinoa HOM05D004683 ORTHO05D005388 4.3e-28 129.0 201 47.3
Psat1g173720 Pisum sativum HOM05D004683 ORTHO05D005388 5.6e-28 128.6 197 50.3
Solyc11g012610.2 Solanum lycopersicum HOM05D004683 ORTHO05D005388 9.6e-28 127.9 212 46.2
PGSC0003DMG400013358 Solanum tuberosum HOM05D004683 ORTHO05D005388 9.6e-28 127.9 213 46.0
Ah.09g234040 Amaranthus hybridus HOM05D004683 ORTHO05D005388 2.1e-27 126.7 196 49.5
CDE04G2289 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 2.8e-27 126.3 188 49.5
PGR004G0928 Punica granatum HOM05D004683 ORTHO05D005388 2.8e-27 126.3 208 47.6
Sopen00g010710 Solanum pennellii HOM05D004683 ORTHO05D005388 2.8e-27 126.3 211 46.0
Gorai.010G188900 Gossypium raimondii HOM05D004683 ORTHO05D005388 4.8e-27 125.6 199 48.7
Gohir.D06G161900 Gossypium hirsutum HOM05D004683 ORTHO05D005388 1.8e-26 123.6 199 47.7
MD00G1058000 Malus domestica HOM05D004683 ORTHO05D005388 2.4e-26 123.2 210 47.1
Gohir.A06G155500 Gossypium hirsutum HOM05D004683 ORTHO05D005388 5.3e-26 122.1 203 46.8
THA.LOC104806735 Tarenaya hassleriana HOM05D004683 ORTHO05D005388 6.9e-26 121.7 200 49.0
FAN25G2373 Fragaria x ananassa HOM05D004683 ORTHO05D005388 9.0e-26 121.3 194 50.0
CAN.G696.10 Capsicum annuum HOM05D004683 ORTHO05D005388 2.6e-25 119.8 214 44.4
MSTRG.7144 Avicennia marina HOM05D004683 ORTHO05D005388 4.5e-25 119.0 150 52.7
Peaxi162Scf00352g01036 Petunia axillaris HOM05D004683 ORTHO05D005388 4.5e-25 119.0 205 47.3
Migut.M01430 Erythranthe guttata HOM05D004683 ORTHO05D005388 7.6e-25 118.2 203 46.8
Eucgr.D01443 Eucalyptus grandis HOM05D004683 ORTHO05D005388 1.3e-24 117.5 210 49.0
SGA_v2.0_scaffold7G03714 Striga asiatica HOM05D004683 ORTHO05D005388 1.7e-24 117.1 152 52.6
QL05p068304 Quercus lobata HOM05D004683 ORTHO05D005388 1.9e-23 113.6 202 46.0
HanXRQChr15g0470281 Helianthus annuus HOM05D004683 ORTHO05D005388 5.5e-23 112.1 196 45.4
Lalb_Chr15g0088101 Lupinus albus HOM05D004683 ORTHO05D005388 9.3e-23 111.3 198 46.0
Oeu052851.1 Olea europaea HOM05D004683 ORTHO05D005388 9.3e-23 111.3 116 61.2
Oeu030103.1 Olea europaea HOM05D004683 ORTHO05D005388 1.2e-22 110.9 140 52.1
SalBow8G0627 Salvia bowleyana HOM05D004683 ORTHO05D005388 4.6e-22 109.0 204 45.6
PGSC0003DMG400023555 Solanum tuberosum HOM05D004683 ORTHO05D005388 4.6e-22 109.0 210 44.8
Nitab4.5_0001109g0120 Nicotiana tabacum HOM05D004683 ORTHO05D005388 1.3e-21 107.5 201 43.8
HPP92_028363 Vanilla planifolia HOM05D004683 ORTHO05D005388 1.3e-21 107.5 197 43.1
Nitab4.5_0004646g0030 Nicotiana tabacum HOM05D004683 ORTHO05D005388 2.3e-21 106.7 201 43.8
HPP92_014031 Vanilla planifolia HOM05D004683 ORTHO05D005388 2.3e-21 106.7 197 43.1
DCAR_030854 Daucus carota HOM05D004683 ORTHO05D005388 5.1e-21 105.5 197 46.2
Solyc04g014850.3 Solanum lycopersicum HOM05D004683 ORTHO05D005388 1.5e-20 104.0 197 44.2
Sopen04g006980 Solanum pennellii HOM05D004683 ORTHO05D005388 1.5e-20 104.0 197 44.2
Oeu052866.1 Olea europaea HOM05D004683 ORTHO05D005388 1.9e-20 103.6 119 57.1
BcaC09g50454 Brassica carinata HOM05D004683 ORTHO05D005388 2.5e-20 103.2 195 44.6
C01p25270 Brassica napus HOM05D004683 ORTHO05D005388 2.5e-20 103.2 195 44.6
BolC1t02477H Brassica oleracea HOM05D004683 ORTHO05D005388 4.3e-20 102.4 195 44.1
A01p20140 Brassica napus HOM05D004683 ORTHO05D005388 7.4e-20 101.7 199 45.7
BraA01t01938Z Brassica rapa HOM05D004683 ORTHO05D005388 7.4e-20 101.7 199 45.7
CARHR223850 Cardamine hirsuta HOM05D004683 ORTHO05D005388 7.4e-20 101.7 203 46.8
Thhalv10025641m.g Eutrema salsugineum HOM05D004683 ORTHO05D005388 1.3e-19 100.9 199 45.7
AT4G17240 Arabidopsis thaliana HOM05D004683 ORTHO05D005388 2.1e-19 100.1 202 46.5
Cc09_g00590 Coffea canephora HOM05D004683 ORTHO05D005388 3.7e-19 99.4 132 50.0
Peaxi162Scf01544g00025 Petunia axillaris HOM05D004683 ORTHO05D005388 3.7e-19 99.4 119 53.8
Atru.chr1.2335 Acer truncatum HOM05D004683 ORTHO05D005388 4.8e-19 99.0 201 41.8
AL7G37470 Arabidopsis lyrata HOM05D004683 ORTHO05D005388 4.8e-19 99.0 201 45.8
Haze_06980 Corylus avellana HOM05D004683 ORTHO05D005388 4.8e-19 99.0 188 42.6
Sp7g16950 Schrenkiella parvula HOM05D004683 ORTHO05D005388 8.1e-19 98.2 206 45.6
CDE04G1899 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.4e-18 97.4 203 43.3
Carub.0007s2417 Capsella rubella HOM05D004683 ORTHO05D005388 3.1e-18 96.3 202 45.0
BcaNung00108 Brassica carinata HOM05D004683 ORTHO05D005388 9.0e-18 94.7 203 42.9
SEGI_35929 Sequoiadendron giganteum HOM05D004683 ORTHO05D005388 5.8e-17 92.0 219 39.3
COL.COLO4_30227 Corchorus olitorius HOM05D001156 ORTHO05D001006 1.7e-16 90.5 117 51.3
CDE07G1645 Ceratophyllum demersum HOM05D004683 ORTHO05D005388 1.9e-15 87.0 200 37.5
Aa31LG6G60 Aethionema arabicum HOM05D004683 ORTHO05D005388 5.5e-15 85.5 219 37.9
Os03g0750900 Oryza sativa ssp. japonica HOM05D004683 ORTHO05D005388 1.0e-13 81.3 144 45.1
VMungo0540G0168 Vigna mungo HOM05D004683 ORTHO05D005388 6.7e-13 78.6 132 44.7
FAN11G0338 Fragaria x ananassa HOM05D004683 ORTHO05D035386 1.5e-12 77.4 91 56.0
Glyma.09G012400 Glycine max HOM05D004683 ORTHO05D005388 5.7e-12 75.5 198 36.4
Glyma.15G117000 Glycine max HOM05D004683 ORTHO05D005388 7.4e-12 75.1 193 35.8
Ca_00746_v3 Cicer arietinum L. HOM05D004683 ORTHO05D005388 1.4e-10 70.9 90 50.0
A09p40660 Brassica napus HOM05D004683 ORTHO05D005388 1.3e-08 64.3 50 70.0
Zm00001eb057420 Zea mays HOM05D004683 ORTHO05D005388 1.7e-08 63.9 207 36.7
Zm00001eb214850 Zea mays HOM05D004683 ORTHO05D005388 1.7e-08 63.9 163 38.7
FvH4_3g38640 Fragaria vesca HOM05D037407 ORTHO05D035386 1.4e-07 60.8 71 56.3
ECA246G4668 Erigeron canadensis HOM05D004683 ORTHO05D005388 3.2e-07 59.7 134 38.1
FvH4_3g16370 Fragaria vesca HOM05D037407 ORTHO05D035386 7.2e-07 58.5 76 48.7
CAN.G1263.24 Capsicum annuum HOM05D004683 ORTHO05D005388 1.2e-06 57.8 146 33.6


User provided reference genes

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