Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001844 Camellia sinensis var. sinensis HOM05D007454 ORTHO05D009382 6.2e-79 297.4 147 100.0
Rhsim02G0189300 Rhododendron simsii HOM05D007454 ORTHO05D009382 5.1e-49 198.0 147 66.0
Actinidia13275 Actinidia chinensis HOM05D007454 ORTHO05D009382 2.4e-38 162.5 148 60.8
QL12p031592 Quercus lobata HOM05D007454 ORTHO05D009382 2.0e-37 159.5 149 55.0
Thecc.09G146500 Theobroma cacao HOM05D007454 ORTHO05D009382 4.5e-37 158.3 149 54.4
Actinidia29311 Actinidia chinensis HOM05D007454 ORTHO05D009382 1.7e-36 156.4 149 59.1
Nitab4.5_0003201g0010 Nicotiana tabacum HOM05D007454 ORTHO05D009382 2.5e-35 152.5 148 52.0
Potri.006G248300 Populus trichocarpa HOM05D007454 ORTHO05D009382 5.5e-35 151.4 148 54.7
Sabra06G0194300 Salix brachista HOM05D007454 ORTHO05D009382 1.2e-34 150.2 149 53.7
Gorai.007G350400 Gossypium raimondii HOM05D007454 ORTHO05D009382 1.6e-34 149.8 151 49.0
Manes.03G018900 Manihot esculenta HOM05D007454 ORTHO05D009382 1.6e-34 149.8 150 55.3
Manes.16G117700 Manihot esculenta HOM05D007454 ORTHO05D009382 2.7e-34 149.1 153 52.9
Cfa013203 Carpinus fangiana HOM05D007454 ORTHO05D009382 3.6e-34 148.7 146 54.8
Nitab4.5_0000125g0360 Nicotiana tabacum HOM05D007454 ORTHO05D009382 6.1e-34 147.9 148 50.7
Gohir.A11G304800 Gossypium hirsutum HOM05D007454 ORTHO05D009382 8.0e-34 147.5 151 49.0
TWI34G0809 Tripterygium wilfordii HOM05D007454 ORTHO05D009382 1.8e-33 146.4 149 51.7
COL.COLO4_24027 Corchorus olitorius HOM05D007454 ORTHO05D009382 2.3e-33 146.0 147 49.0
RcHm_v2.0_Chr6g0298931 Rosa chinensis HOM05D007454 ORTHO05D009382 6.7e-33 144.4 152 56.6
FAN20G1122 Fragaria x ananassa HOM05D007454 ORTHO05D009382 1.5e-32 143.3 148 54.7
FvH4_2g29860 Fragaria vesca HOM05D007454 ORTHO05D009382 2.0e-32 142.9 152 54.6
FAN15G1931 Fragaria x ananassa HOM05D007454 ORTHO05D009382 2.6e-32 142.5 152 54.6
FAN27G1093 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.4e-32 141.7 152 53.3
Gohir.D11G320200 Gossypium hirsutum HOM05D007454 ORTHO05D009382 5.7e-32 141.4 151 48.3
Oeu032495.1 Olea europaea HOM05D007454 ORTHO05D009382 5.7e-32 141.4 147 49.7
Haze_21608 Corylus avellana HOM05D007454 ORTHO05D009382 4.8e-31 138.3 149 53.0
FAN24G1693 Fragaria x ananassa HOM05D007454 ORTHO05D009382 4.1e-30 135.2 152 52.0
Dinv11595 Davidia involucrata HOM05D007454 ORTHO05D009382 1.0e-28 130.6 115 54.8
CAN.G506.13 Capsicum annuum HOM05D007454 ORTHO05D009382 1.7e-28 129.8 150 46.7
Prupe.1G471000 Prunus persica HOM05D007454 ORTHO05D009382 2.2e-28 129.4 151 51.0
CiPaw.08G014500 Carya illinoinensis HOM05D007454 ORTHO05D009382 5.0e-28 128.3 159 52.8
Migut.A00288 Erythranthe guttata HOM05D007454 ORTHO05D009382 5.0e-28 128.3 150 46.7
Solyc08g067630.3 Solanum lycopersicum HOM05D007454 ORTHO05D009382 6.5e-28 127.9 156 47.4
TAR383G0100 Trochodendron aralioides HOM05D007454 ORTHO05D009382 1.1e-27 127.1 149 47.7
Cc11_g01380 Coffea canephora HOM05D007454 ORTHO05D009382 2.5e-27 125.9 155 44.5
PGSC0003DMG400002261 Solanum tuberosum HOM05D007454 ORTHO05D009382 2.5e-27 125.9 153 46.4
Duzib150G0674 Durio zibethinus HOM05D007454 ORTHO05D009382 3.2e-27 125.6 117 51.3
TAR626G1515 Trochodendron aralioides HOM05D007454 ORTHO05D009382 3.2e-27 125.6 147 47.6
CiPaw.07G219000 Carya illinoinensis HOM05D007454 ORTHO05D009382 1.2e-26 123.6 161 48.4
Nn2g11862 Nelumbo nucifera HOM05D007454 ORTHO05D009382 1.2e-26 123.6 160 43.8
DCAR_001472 Daucus carota HOM05D007454 ORTHO05D009382 2.7e-26 122.5 154 44.2
ECA248G0251 Erigeron canadensis HOM05D007454 ORTHO05D009382 2.7e-26 122.5 150 43.3
HanXRQChr01g0030031 Helianthus annuus HOM05D007454 ORTHO05D009382 4.7e-26 121.7 151 43.7
Lsat_1_v5_gn_1_45380 Lactuca sativa HOM05D007454 ORTHO05D009382 1.4e-25 120.2 149 43.0
Atru.chr7.2345 Acer truncatum HOM05D007454 ORTHO05D009382 3.0e-25 119.0 149 44.3
MD15G1117600 Malus domestica HOM05D007454 ORTHO05D009382 3.0e-25 119.0 146 45.2
Aqoxy7G01923 Aquilegia oxysepala HOM05D007454 ORTHO05D009382 3.1e-22 109.0 144 43.8
Ciclev10009811m.g Citrus clementina HOM05D007454 ORTHO05D009382 1.6e-21 106.7 152 44.7
Glyma.06G072000 Glycine max HOM05D007454 ORTHO05D009382 2.0e-21 106.3 147 42.9
MD08G1140700 Malus domestica HOM05D007454 ORTHO05D009382 2.0e-21 106.3 147 44.2
Glyma.04G070000 Glycine max HOM05D007454 ORTHO05D009382 2.9e-20 102.4 150 41.3
ClCG05G017140 Citrullus lanatus HOM05D007454 ORTHO05D009382 3.8e-20 102.1 142 40.8
AT2G25625 Arabidopsis thaliana HOM05D007454 ORTHO05D009382 2.5e-19 99.4 157 42.0
unitig_748.g8205 Utricularia gibba HOM05D007454 ORTHO05D009382 4.2e-19 98.6 150 41.3
EL10Ac2g02557 Beta vulgaris HOM05D007454 ORTHO05D009382 1.2e-18 97.1 162 42.6
arahy.Tifrunner.gnm1.ann1.AC8RV3 Arachis hypogaea HOM05D007454 ORTHO05D009382 1.6e-18 96.7 156 40.4
Hund25693 Selenicereus undatus HOM05D007454 ORTHO05D009382 2.8e-18 95.9 162 38.9
CARHR115660 Cardamine hirsuta HOM05D007454 ORTHO05D009382 3.6e-18 95.5 161 41.6
Lj1g0018180 Lotus japonicus HOM05D007454 ORTHO05D009382 3.6e-18 95.5 162 38.9
Sed0012550 Sechium edule HOM05D007454 ORTHO05D009382 3.6e-18 95.5 154 36.4
Cpa.g.sc603.1 Carica papaya HOM05D007454 ORTHO05D009382 4.7e-18 95.1 126 42.1
arahy.Tifrunner.gnm1.ann1.X4UCF1 Arachis hypogaea HOM05D007454 ORTHO05D009382 8.0e-18 94.4 153 39.2
Phvul.009G096400 Phaseolus vulgaris HOM05D007454 ORTHO05D009382 8.0e-18 94.4 147 40.1
Lalb_Chr23g0268861 Lupinus albus HOM05D007454 ORTHO05D009382 1.4e-17 93.6 133 44.4
AL4G17110 Arabidopsis lyrata HOM05D007454 ORTHO05D009382 1.8e-17 93.2 157 40.1
Eucgr.C01807 Eucalyptus grandis HOM05D007454 ORTHO05D009382 2.3e-17 92.8 161 38.5
ClCG08G012990 Citrullus lanatus HOM05D007454 ORTHO05D009382 4.0e-17 92.0 150 35.3
MELO3C003676.2 Cucumis melo HOM05D007454 ORTHO05D009382 4.0e-17 92.0 158 41.8
THA.LOC104803822 Tarenaya hassleriana HOM05D007454 ORTHO05D009382 6.8e-17 91.3 151 37.7
Thhalv10000347m.g Eutrema salsugineum HOM05D007454 ORTHO05D009382 8.9e-17 90.9 156 39.1
Sed0003243 Sechium edule HOM05D007454 ORTHO05D009382 8.9e-17 90.9 164 37.2
Carub.0004s0541 Capsella rubella HOM05D007454 ORTHO05D009382 2.6e-16 89.4 155 39.4
CsaV3_3G046620 Cucumis sativus L. HOM05D007454 ORTHO05D009382 2.6e-16 89.4 166 35.5
A04p19830 Brassica napus HOM05D007454 ORTHO05D009382 4.4e-16 88.6 157 36.3
BraA04t17571Z Brassica rapa HOM05D007454 ORTHO05D009382 4.4e-16 88.6 157 36.3
Sp4g05200 Schrenkiella parvula HOM05D007454 ORTHO05D009382 5.7e-16 88.2 159 39.0
Ca_15708_v3 Cicer arietinum L. HOM05D007454 ORTHO05D009382 1.3e-15 87.0 167 37.7
CsaV3_2G031720 Cucumis sativus L. HOM05D007454 ORTHO05D009382 1.3e-15 87.0 145 35.9
Sopen08g021580 Solanum pennellii HOM05D007454 ORTHO05D009382 1.3e-15 87.0 102 47.1
SalBow4G3079 Salvia bowleyana HOM05D007454 ORTHO05D009382 1.7e-15 86.7 82 54.9
BcaB06g28081 Brassica carinata HOM05D007454 ORTHO05D009382 2.8e-15 85.9 157 35.7
VMungo1309G0733 Vigna mungo HOM05D007454 ORTHO05D009382 3.7e-15 85.5 116 42.2
PSO017G6963 Papaver somniferum HOM05D007454 ORTHO05D009382 4.9e-15 85.1 130 40.8
MELO3C011223.2 Cucumis melo HOM05D007454 ORTHO05D009382 1.1e-14 84.0 115 38.3
PSO170G5517 Papaver somniferum HOM05D007454 ORTHO05D009382 1.1e-14 84.0 160 37.5
BcaC02g08336 Brassica carinata HOM05D007454 ORTHO05D009382 1.4e-14 83.6 157 36.3
C04p55570 Brassica napus HOM05D007454 ORTHO05D009382 1.4e-14 83.6 157 36.3
BolC4t27081H Brassica oleracea HOM05D007454 ORTHO05D009382 1.4e-14 83.6 157 36.3
Medtr3g107890 Medicago truncatula HOM05D007454 ORTHO05D009382 7.0e-14 81.3 164 38.4
Sc09g0008740 Simmondsia chinensis HOM05D007454 ORTHO05D009382 5.9e-13 78.2 157 36.9
CANSAT11G0218 Cannabis sativa HOM05D007454 ORTHO05D009382 1.7e-12 76.6 157 36.9
CDE06G2386 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 1.7e-12 76.6 140 40.7
Aa31LG1G8530 Aethionema arabicum HOM05D007454 ORTHO05D009382 5.0e-12 75.1 155 37.4
Sed0011711 Sechium edule HOM05D007454 ORTHO05D009382 1.5e-11 73.6 137 34.3
TPR.G27330 Trifolium pratense HOM05D007454 ORTHO05D009382 1.9e-11 73.2 176 34.1
CDE07G1568 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 2.5e-11 72.8 127 34.6
Zm00001eb296620 Zea mays HOM05D007454 ORTHO05D009382 2.1e-10 69.7 66 50.0
MBI01_g03566_MAGBIO Magnolia biondii HOM05D007454 ORTHO05D009382 8.0e-10 67.8 118 39.8
Os05g0575000 Oryza sativa ssp. japonica HOM05D007454 ORTHO05D009382 3.1e-09 65.9 36 69.4
TPR.G34694 Trifolium pratense HOM05D007454 ORTHO05D009382 2.6e-08 62.8 152 33.6
Psat5g027000 Pisum sativum HOM05D007454 ORTHO05D009382 9.8e-08 60.8 65 49.2
CDE06G2168 Ceratophyllum demersum HOM05D007454 ORTHO05D009382 3.7e-07 58.9 41 58.5


User provided reference genes

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