Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 1.5e-221 772.7 422 100.0
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 4.3e-189 664.8 421 86.0
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 3.7e-185 651.7 424 83.7
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 1.3e-169 600.1 443 78.3
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.2e-169 599.4 425 79.1
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.1e-166 588.2 426 76.5
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 2.5e-165 585.9 421 75.8
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.1e-164 582.8 437 75.3
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 3.2e-160 568.9 427 75.2
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.2e-159 567.0 430 74.2
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 2.7e-159 565.8 497 67.4
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 1.0e-158 563.9 425 74.6
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 5.1e-158 561.6 428 73.1
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 2.5e-157 559.3 415 75.2
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 1.3e-156 557.0 425 73.6
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 1.8e-155 553.1 424 74.5
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 3.1e-155 552.4 411 74.7
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 5.3e-155 551.6 425 73.6
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 2.0e-154 549.7 422 74.2
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.6e-154 549.3 430 71.9
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 7.6e-154 547.7 428 72.7
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 7.6e-154 547.7 430 72.1
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.9e-153 545.8 429 72.7
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 3.2e-152 542.3 430 71.9
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 5.4e-152 541.6 414 72.5
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 9.3e-152 540.8 415 73.7
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 9.3e-152 540.8 430 72.1
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 1.2e-151 540.4 431 72.4
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 2.1e-151 539.7 430 71.4
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 1.3e-150 537.0 429 70.9
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 2.3e-150 536.2 431 71.2
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 8.7e-150 534.3 430 71.4
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 4.3e-149 531.9 453 67.3
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 5.6e-149 531.6 430 70.9
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 5.6e-149 531.6 424 71.2
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 2.1e-148 529.6 415 70.8
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 6.2e-148 528.1 416 72.1
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 1.1e-147 527.3 429 71.1
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 2.4e-147 526.2 451 66.7
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 7.6e-146 521.2 416 71.2
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 4.9e-145 518.5 476 64.1
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.9e-144 516.5 425 69.4
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 7.1e-144 514.6 426 69.7
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 3.5e-143 512.3 423 68.1
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 6.7e-142 508.1 431 68.9
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 8.7e-142 507.7 419 69.5
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 8.2e-140 501.1 422 67.8
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 5.3e-139 498.4 416 69.2
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 5.3e-139 498.4 416 70.0
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.2e-138 497.3 430 67.0
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.5e-138 496.9 422 67.5
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 2.6e-138 496.1 419 68.5
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 3.4e-138 495.7 418 68.4
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.3e-137 493.8 422 66.8
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.2e-137 493.0 422 67.3
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.9e-137 492.7 422 66.6
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.9e-136 490.0 423 66.7
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 4.2e-136 488.8 433 67.4
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 4.2e-136 488.8 418 69.1
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 5.5e-136 488.4 408 70.1
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 2.1e-135 486.5 370 74.6
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 1.8e-134 483.4 420 67.1
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.7e-134 481.5 371 73.0
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 6.7e-134 481.5 429 66.2
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 2.8e-132 476.1 422 67.8
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 2.8e-132 476.1 418 68.7
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 8.2e-132 474.6 418 66.3
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 1.1e-131 474.2 412 68.9
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.2e-130 470.7 415 66.5
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.2e-130 470.7 428 63.8
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 1.7e-129 466.8 399 68.2
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 2.9e-129 466.1 411 66.4
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 5.0e-129 465.3 293 86.7
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.4e-128 463.8 422 64.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 1.9e-128 463.4 435 63.0
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 3.9e-126 455.7 408 65.4
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 8.8e-126 454.5 420 63.3
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 5.7e-125 451.8 422 64.0
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 1.3e-124 450.7 429 64.6
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 4.1e-123 445.7 420 64.3
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 5.3e-123 445.3 409 65.0
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 1.2e-122 444.1 408 64.7
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 7.7e-122 441.4 426 63.1
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.0e-121 441.0 416 62.7
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 1.1e-120 437.6 417 62.6
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 4.2e-120 435.6 413 63.0
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 5.5e-120 435.3 427 63.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 4.7e-119 432.2 279 81.7
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 1.4e-118 430.6 418 62.4
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 1.8e-115 420.2 373 65.7
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 3.1e-115 419.5 421 60.8
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 5.3e-115 418.7 453 58.5
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.0e-114 416.8 422 63.0
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 3.8e-113 412.5 413 60.5
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 5.0e-113 412.1 414 59.7
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 6.5e-113 411.8 312 74.7
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 3.2e-112 409.5 397 61.2
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.6e-111 407.1 426 59.9
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 6.7e-110 401.7 407 58.7
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 7.4e-109 398.3 385 62.1
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 7.4e-109 398.3 385 62.1
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 4.8e-108 395.6 416 57.9
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 6.5e-105 385.2 353 63.7
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 4.7e-103 379.0 461 52.7
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 4.8e-100 369.0 396 57.3
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 7.0e-99 365.2 375 58.7
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 3.6e-95 352.8 264 75.0
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 6.1e-95 352.1 414 55.3
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 1.4e-94 350.9 431 55.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 9.1e-91 338.2 416 51.9
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 1.2e-87 327.8 305 64.6
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 2.1e-87 327.0 409 54.0
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 3.6e-87 326.2 262 70.6
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 3.8e-81 306.2 329 57.8
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 1.2e-77 294.7 264 68.9
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 2.7e-74 283.5 268 63.1
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 6.6e-73 278.9 268 62.3
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 4.3e-72 276.2 341 53.4
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 4.4e-69 266.2 266 62.8
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 5.8e-69 265.8 266 62.8
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 4.9e-68 262.7 276 61.6
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 1.7e-65 254.2 276 60.1
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 8.6e-65 251.9 422 43.8
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.9e-64 250.8 194 70.6
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 9.5e-64 248.4 263 61.6
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 2.0e-61 240.7 435 41.6
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.3e-60 238.0 342 49.7
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 4.9e-60 236.1 247 56.7
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 2.4e-59 233.8 178 72.5
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 8.1e-55 218.8 264 54.9
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 5.4e-51 206.1 443 39.1
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 7.1e-51 205.7 265 52.8
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 3.0e-49 200.3 385 39.0
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 3.9e-49 199.9 136 75.0
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 3.3e-48 196.8 135 74.8
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 9.6e-48 195.3 192 62.0
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 3.1e-46 190.3 182 62.1
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 1.7e-44 184.5 131 76.3
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 2.3e-41 174.1 414 37.4
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.9e-38 162.5 132 67.4
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 3.4e-37 160.2 155 57.4
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 5.1e-33 146.4 141 57.4
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 2.1e-31 141.0 542 31.4
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 4.2e-19 100.1 182 45.1
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 9.3e-19 99.0 125 52.8
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 3.9e-17 93.6 229 39.7
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 2.4e-06 57.8 108 39.8
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 3.1e-06 57.4 37 70.3


User provided reference genes

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