Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001756 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 9.4e-77 290.0 139 100.0
CSS0020228 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 4.7e-44 181.4 147 66.0
CSS0043490 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.9e-37 159.5 174 54.6
CSS0008944 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 2.0e-34 149.4 165 52.7
CSS0037655 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 7.5e-34 147.5 158 53.8
Actinidia03928 Actinidia chinensis HOM05D002156 ORTHO05D002328 7.6e-26 120.9 157 47.1
vmacro07661 Vaccinium macrocarpon HOM05D002156 ORTHO05D002328 1.4e-24 116.7 121 53.7
Hma1.2p1_1039F.1_g250900 Hydrangea macrophylla HOM05D002156 ORTHO05D002328 2.1e-23 112.8 124 45.2
CSS0038488 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 1.3e-22 110.2 142 51.4
Rhsim03G0050200 Rhododendron simsii HOM05D002156 ORTHO05D002328 3.3e-21 105.5 116 48.3
Lj1A1067G36 Lonicera japonica HOM05D002156 ORTHO05D002328 2.1e-20 102.8 125 44.0
Thecc.05G243200 Theobroma cacao HOM05D002156 ORTHO05D002328 2.8e-20 102.4 124 42.7
MD12G1009700 Malus domestica HOM05D002156 ORTHO05D002328 4.7e-20 101.7 130 44.6
GSVIVG01025814001 Vitis vinifera HOM05D002156 ORTHO05D002328 4.7e-20 101.7 125 46.4
Atru.chr2.1496 Acer truncatum HOM05D002156 ORTHO05D002328 8.1e-20 100.9 126 44.4
CiPaw.09G168300 Carya illinoinensis HOM05D002156 ORTHO05D002328 8.1e-20 100.9 124 47.6
Duzib128G0733 Durio zibethinus HOM05D002156 ORTHO05D002328 1.1e-19 100.5 122 44.3
Duzib106G2010 Durio zibethinus HOM05D002156 ORTHO05D002328 1.8e-19 99.8 125 44.0
TWI32G0999 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 3.1e-19 99.0 129 46.5
Prupe.7G011900 Prunus persica HOM05D002156 ORTHO05D002328 4.0e-19 98.6 125 44.8
Cfa017704 Carpinus fangiana HOM05D002156 ORTHO05D002328 5.2e-19 98.2 127 44.9
COL.COLO4_28629 Corchorus olitorius HOM05D002156 ORTHO05D002328 5.2e-19 98.2 121 43.8
MD14G1007100 Malus domestica HOM05D002156 ORTHO05D002328 8.9e-19 97.4 121 45.5
Haze_20432 Corylus avellana HOM05D002156 ORTHO05D002328 1.2e-18 97.1 127 44.9
TAR623G0551 Trochodendron aralioides HOM05D002156 ORTHO05D002328 1.5e-18 96.7 125 43.2
Cpa.g.sc161.28 Carica papaya HOM05D002156 ORTHO05D002328 2.6e-18 95.9 119 42.0
CSS0046058 Camellia sinensis var. sinensis HOM05D002156 ORTHO05D002328 3.4e-18 95.5 124 50.0
Gohir.D11G241900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.4e-18 95.5 122 42.6
Gorai.007G256200 Gossypium raimondii HOM05D002156 ORTHO05D002328 3.4e-18 95.5 122 42.6
Ciclev10019878m.g Citrus clementina HOM05D002156 ORTHO05D002328 7.6e-18 94.4 120 46.7
Sc07g0007830 Simmondsia chinensis HOM05D002156 ORTHO05D002328 7.6e-18 94.4 128 39.8
MD12G1009900 Malus domestica HOM05D002156 ORTHO05D002328 1.3e-17 93.6 121 43.8
TWI34G0345 Tripterygium wilfordii HOM05D002156 ORTHO05D002328 1.3e-17 93.6 119 46.2
arahy.Tifrunner.gnm1.ann1.7VP81J Arachis hypogaea HOM05D002156 ORTHO05D002328 1.7e-17 93.2 119 41.2
arahy.Tifrunner.gnm1.ann1.M0VUV2 Arachis hypogaea HOM05D002156 ORTHO05D002328 1.7e-17 93.2 119 41.2
Gohir.A11G230100 Gossypium hirsutum HOM05D002156 ORTHO05D002328 2.9e-17 92.4 122 41.0
QL07p017931 Quercus lobata HOM05D002156 ORTHO05D002328 2.9e-17 92.4 123 43.9
MD09G1231100 Malus domestica HOM05D002156 ORTHO05D002328 3.8e-17 92.0 119 44.5
RcHm_v2.0_Chr3g0496221 Rosa chinensis HOM05D002156 ORTHO05D002328 4.9e-17 91.7 123 41.5
Aqoxy1G00521 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 6.4e-17 91.3 125 44.0
Lj1g0011130 Lotus japonicus HOM05D002156 ORTHO05D002328 8.4e-17 90.9 123 41.5
EL10Ac5g11718 Beta vulgaris HOM05D002156 ORTHO05D002328 1.4e-16 90.1 128 37.5
Gohir.A13G163900 Gossypium hirsutum HOM05D002156 ORTHO05D002328 1.9e-16 89.7 122 41.0
HanXRQChr11g0348131 Helianthus annuus HOM05D002156 ORTHO05D002328 1.9e-16 89.7 119 43.7
Sabra13G0056700 Salix brachista HOM05D002156 ORTHO05D002328 2.4e-16 89.4 125 40.0
Gohir.D13G166800 Gossypium hirsutum HOM05D002156 ORTHO05D002328 3.2e-16 89.0 124 41.1
PGR042G0405 Punica granatum HOM05D002156 ORTHO05D002328 4.2e-16 88.6 114 43.0
Gorai.013G195700 Gossypium raimondii HOM05D002156 ORTHO05D002328 7.1e-16 87.8 124 40.3
Potri.019G039300 Populus trichocarpa HOM05D002156 ORTHO05D002328 7.1e-16 87.8 119 41.2
Ca_08306_v3 Cicer arietinum L. HOM05D002156 ORTHO05D002328 2.7e-15 85.9 119 40.3
Potri.013G064800 Populus trichocarpa HOM05D002156 ORTHO05D002328 2.7e-15 85.9 125 38.4
FvH4_1g28540 Fragaria vesca HOM05D002156 ORTHO05D002328 3.5e-15 85.5 119 40.3
Lalb_Chr14g0364791 Lupinus albus HOM05D002156 ORTHO05D002328 4.6e-15 85.1 120 37.5
FAN19G2483 Fragaria x ananassa HOM05D002156 ORTHO05D002328 6.0e-15 84.7 119 40.3
FAN23G2882 Fragaria x ananassa HOM05D002156 ORTHO05D002328 1.0e-14 84.0 142 40.1
Manes.08G153900 Manihot esculenta HOM05D002156 ORTHO05D002328 1.0e-14 84.0 119 40.3
Nn2g14545 Nelumbo nucifera HOM05D002156 ORTHO05D002328 1.3e-14 83.6 120 43.3
Lsat_1_v5_gn_2_103620 Lactuca sativa HOM05D002156 ORTHO05D002328 1.7e-14 83.2 124 39.5
THA.LOC104800404 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.7e-14 83.2 115 41.7
Eucgr.A02134 Eucalyptus grandis HOM05D002156 ORTHO05D002328 2.3e-14 82.8 117 39.3
THA.LOC104800077 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 2.3e-14 82.8 115 40.9
DCAR_020655 Daucus carota HOM05D002156 ORTHO05D002328 6.6e-14 81.3 121 35.5
ECA232G4690 Erigeron canadensis HOM05D000927 ORTHO05D029280 1.1e-13 80.5 131 38.2
Medtr7g086460 Medicago truncatula HOM05D002156 ORTHO05D002328 1.1e-13 80.5 112 39.3
ECA248G3031 Erigeron canadensis HOM05D002156 ORTHO05D002328 1.5e-13 80.1 115 42.6
Glyma.19G116100 Glycine max HOM05D002156 ORTHO05D002328 1.9e-13 79.7 119 37.8
Cc06_g17240 Coffea canephora HOM05D002156 ORTHO05D002328 4.3e-13 78.6 120 37.5
Glyma.16G037000 Glycine max HOM05D002156 ORTHO05D002328 5.6e-13 78.2 122 35.2
Psat3g087320 Pisum sativum HOM05D002156 ORTHO05D002328 5.6e-13 78.2 125 36.8
Aqoxy2G00573 Aquilegia oxysepala HOM05D002156 ORTHO05D002328 9.6e-13 77.4 144 34.7
PSO384G2429 Papaver somniferum HOM05D002156 ORTHO05D002328 1.3e-12 77.0 122 36.1
CDE05G3656 Ceratophyllum demersum HOM05D002156 ORTHO05D002328 1.6e-12 76.6 120 36.7
THA.LOC104821409 Tarenaya hassleriana HOM05D002156 ORTHO05D002328 1.6e-12 76.6 115 36.5
Lsat_1_v5_gn_1_55260 Lactuca sativa HOM05D002156 ORTHO05D002328 2.1e-12 76.3 119 38.7
CsaV3_4G011990 Cucumis sativus L. HOM05D002156 ORTHO05D002328 4.8e-12 75.1 125 38.4
Oeu056497.3 Olea europaea HOM05D002156 ORTHO05D002328 4.8e-12 75.1 116 37.9
AUR62036257 Chenopodium quinoa HOM05D002156 ORTHO05D002328 6.2e-12 74.7 129 34.9
SalBow1G7226 Salvia bowleyana HOM05D002156 ORTHO05D002328 6.2e-12 74.7 120 36.7
Solyc01g057090.4 Solanum lycopersicum HOM05D002156 ORTHO05D002328 6.2e-12 74.7 119 36.1
VMungo1383G3546 Vigna mungo HOM05D002156 ORTHO05D002328 8.1e-12 74.3 117 35.9
Oeu032944.1 Olea europaea HOM05D002156 ORTHO05D002328 1.4e-11 73.6 117 38.5
Sopen01g021430 Solanum pennellii HOM05D002156 ORTHO05D002328 1.4e-11 73.6 119 36.1
HanXRQChr07g0197191 Helianthus annuus HOM05D002156 ORTHO05D002328 2.4e-11 72.8 121 35.5
Nitab4.5_0001720g0020 Nicotiana tabacum HOM05D002156 ORTHO05D002328 2.4e-11 72.8 124 38.7
MELO3C008849.2 Cucumis melo HOM05D002156 ORTHO05D002328 3.1e-11 72.4 125 37.6
ECA232G3899 Erigeron canadensis HOM05D002156 ORTHO05D029280 4.0e-11 72.0 131 34.4
AUR62038448 Chenopodium quinoa HOM05D002156 ORTHO05D002328 5.3e-11 71.6 129 34.1
HanXRQChr01g0026721 Helianthus annuus HOM05D002156 ORTHO05D029280 5.3e-11 71.6 124 35.5
PGSC0003DMG400013066 Solanum tuberosum HOM05D002156 ORTHO05D002328 5.3e-11 71.6 119 36.1
Dinv25407 Davidia involucrata HOM05D002156 ORTHO05D002328 6.9e-11 71.2 56 55.4
Hund22589 Selenicereus undatus HOM05D002156 ORTHO05D002328 6.9e-11 71.2 117 35.9
SGA_v2.0_scaffold17G07976 Striga asiatica HOM05D002156 ORTHO05D002328 9.0e-11 70.9 113 36.3
Aa31LG2G1840 Aethionema arabicum HOM05D002156 ORTHO05D002328 1.2e-10 70.5 114 36.0
Nitab4.5_0000098g0160 Nicotiana tabacum HOM05D002156 ORTHO05D002328 1.2e-10 70.5 114 39.5
Sed0005796 Sechium edule HOM05D002156 ORTHO05D002328 1.2e-10 70.5 126 36.5
Sed0023631 Sechium edule HOM05D002156 ORTHO05D002328 1.2e-10 70.5 126 34.9
Peaxi162Scf01344g00018 Petunia axillaris HOM05D002156 ORTHO05D002328 1.5e-10 70.1 119 36.1
arahy.Tifrunner.gnm1.ann1.A9N3QV Arachis hypogaea HOM05D002156 ORTHO05D002328 3.4e-10 68.9 118 33.9
HPP92_012146 Vanilla planifolia HOM05D002156 ORTHO05D002328 4.4e-10 68.6 124 33.9
HanXRQChr01g0026731 Helianthus annuus HOM05D002156 ORTHO05D029280 5.8e-10 68.2 119 37.0
Atru.chr8.2310 Acer truncatum HOM05D002156 ORTHO05D002328 7.6e-10 67.8 84 47.6
arahy.Tifrunner.gnm1.ann1.0R4MPN Arachis hypogaea HOM05D002156 ORTHO05D002328 7.6e-10 67.8 119 32.8
ClCG04G004550 Citrullus lanatus HOM05D002156 ORTHO05D002328 7.6e-10 67.8 114 37.7
arahy.Tifrunner.gnm1.ann1.ZF4CS3 Arachis hypogaea HOM05D002156 ORTHO05D002328 9.9e-10 67.4 119 32.8
CAN.G752.1 Capsicum annuum HOM05D002156 ORTHO05D002328 9.9e-10 67.4 119 36.1
ATR0618G027 Amborella trichopoda HOM05D002156 ORTHO05D002328 1.7e-09 66.6 123 35.0
Os03g0654500 Oryza sativa ssp. japonica HOM05D002156 ORTHO05D002328 1.7e-09 66.6 117 34.2
Phvul.001G115500 Phaseolus vulgaris HOM05D002156 ORTHO05D002328 2.2e-09 66.2 117 35.9
MSTRG.10750 Avicennia marina HOM05D002156 ORTHO05D002328 4.9e-09 65.1 110 33.6
Zm00001eb052850 Zea mays HOM05D002156 ORTHO05D002328 8.4e-09 64.3 116 33.6
BcaB03g15489 Brassica carinata HOM05D002156 ORTHO05D002328 1.1e-08 63.9 99 39.4
Migut.K00223 Erythranthe guttata HOM05D002156 ORTHO05D002328 1.9e-08 63.2 113 32.7
unitig_0.g2673 Utricularia gibba HOM05D002156 ORTHO05D002328 2.4e-08 62.8 112 33.0
arahy.Tifrunner.gnm1.ann1.4I7PBY Arachis hypogaea HOM05D002156 ORTHO05D002328 1.2e-07 60.5 113 31.0
BcaC08g45876 Brassica carinata HOM05D002156 ORTHO05D002328 1.6e-07 60.1 83 39.8
C06p36730 Brassica napus HOM05D002156 ORTHO05D002328 2.1e-07 59.7 83 39.8
BolC6t38783H Brassica oleracea HOM05D002156 ORTHO05D002328 2.1e-07 59.7 83 39.8
Thhalv10018456m.g Eutrema salsugineum HOM05D002156 ORTHO05D002328 2.1e-07 59.7 89 39.3
Sp5g24790 Schrenkiella parvula HOM05D002156 ORTHO05D002328 2.7e-07 59.3 89 38.2
TPR.G17860 Trifolium pratense HOM05D002156 ORTHO05D002328 6.0e-07 58.2 97 36.1
A07p31440 Brassica napus HOM05D002156 ORTHO05D002328 1.3e-06 57.0 89 37.1
BraA07t30779Z Brassica rapa HOM05D002156 ORTHO05D002328 1.3e-06 57.0 89 37.1


User provided reference genes

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