Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001755 Camellia sinensis var. sinensis HOM05D005965 ORTHO05D007283 4.5e-258 894.0 444 100.0
Actinidia21493 Actinidia chinensis HOM05D005965 ORTHO05D007283 1.2e-213 746.5 450 83.3
Rhsim05G0139400 Rhododendron simsii HOM05D005965 ORTHO05D007283 4.2e-211 738.0 489 78.1
MD04G1201200 Malus domestica HOM05D005965 ORTHO05D007283 3.2e-195 685.3 449 74.2
GSVIVG01031150001 Vitis vinifera HOM05D005965 ORTHO05D007283 4.2e-195 684.9 448 76.8
Cfa006624 Carpinus fangiana HOM05D005965 ORTHO05D007283 3.1e-190 668.7 454 74.9
Prupe.6G321300 Prunus persica HOM05D005965 ORTHO05D007283 1.4e-187 659.8 450 73.6
CiPaw.07G021000 Carya illinoinensis HOM05D005965 ORTHO05D007283 1.6e-186 656.4 450 72.9
QL03p021207 Quercus lobata HOM05D005965 ORTHO05D007283 5.1e-185 651.4 453 73.7
TAR362G0609 Trochodendron aralioides HOM05D005965 ORTHO05D007283 5.1e-185 651.4 448 73.9
Gohir.D11G277600 Gossypium hirsutum HOM05D005965 ORTHO05D007283 2.5e-184 649.0 450 73.1
Sabra13G0016500 Salix brachista HOM05D005965 ORTHO05D007283 5.7e-184 647.9 454 72.9
Oeu043357.2 Olea europaea HOM05D005965 ORTHO05D007283 9.7e-184 647.1 449 72.6
Gorai.007G299800 Gossypium raimondii HOM05D005965 ORTHO05D007283 1.8e-182 642.9 456 72.1
vmacro19747 Vaccinium macrocarpon HOM05D005965 ORTHO05D007283 6.9e-182 641.0 416 79.6
Ciclev10001128m.g Citrus clementina HOM05D005965 ORTHO05D007283 5.9e-181 637.9 447 73.4
Potri.013G017500 Populus trichocarpa HOM05D005965 ORTHO05D007283 2.2e-180 636.0 453 72.2
Atru.chr2.26 Acer truncatum HOM05D005965 ORTHO05D007283 5.0e-180 634.8 450 72.7
Sabra13G0020500 Salix brachista HOM05D005965 ORTHO05D007283 7.2e-179 630.9 427 74.5
DCAR_003352 Daucus carota HOM05D005965 ORTHO05D007283 1.2e-178 630.2 470 69.8
FAN14G0885 Fragaria x ananassa HOM05D005965 ORTHO05D007283 1.2e-178 630.2 449 70.6
MSTRG.20421 Avicennia marina HOM05D005965 ORTHO05D007283 6.1e-178 627.9 445 70.8
Sopen10g013470 Solanum pennellii HOM05D005965 ORTHO05D007283 3.9e-177 625.2 443 71.1
Solyc10g044780.2 Solanum lycopersicum HOM05D005965 ORTHO05D007283 5.1e-177 624.8 443 70.7
Dinv40342 Davidia involucrata HOM05D005965 ORTHO05D007283 2.6e-176 622.5 339 90.0
PGSC0003DMG400007478 Solanum tuberosum HOM05D005965 ORTHO05D007283 3.3e-176 622.1 443 70.9
Sc16g0008610 Simmondsia chinensis HOM05D005965 ORTHO05D007283 4.4e-176 621.7 451 69.8
RcHm_v2.0_Chr3g0455661 Rosa chinensis HOM05D005965 ORTHO05D007283 3.7e-175 618.6 450 70.4
Manes.08G118100 Manihot esculenta HOM05D005965 ORTHO05D007283 4.8e-175 618.2 448 71.0
TWI12G0462 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 3.1e-174 615.5 450 72.0
Peaxi162Scf00949g00112 Petunia axillaris HOM05D005965 ORTHO05D007283 4.1e-174 615.1 443 71.1
Gohir.A11G267700 Gossypium hirsutum HOM05D005965 ORTHO05D007283 1.5e-173 613.2 450 70.7
CAN.G1.32 Capsicum annuum HOM05D005965 ORTHO05D007283 3.5e-173 612.1 443 69.5
Nn3g21434 Nelumbo nucifera HOM05D005965 ORTHO05D007283 4.5e-173 611.7 446 69.5
Lj1g0019406 Lotus japonicus HOM05D005965 ORTHO05D007283 2.2e-172 609.4 452 67.0
Cpa.g.sc48.91 Carica papaya HOM05D005965 ORTHO05D007283 2.9e-172 609.0 450 70.4
Nitab4.5_0001129g0130 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.9e-172 609.0 454 70.0
FAN02G0246 Fragaria x ananassa HOM05D005965 ORTHO05D007283 2.5e-171 605.9 450 68.7
CsaV3_2G006620 Cucumis sativus L. HOM05D005965 ORTHO05D007283 4.2e-171 605.1 452 67.9
ECA246G4331 Erigeron canadensis HOM05D005965 ORTHO05D007283 1.2e-170 603.6 450 70.0
ClCG02G015450 Citrullus lanatus HOM05D005965 ORTHO05D007283 2.1e-170 602.8 450 69.3
Sed0024378 Sechium edule HOM05D005965 ORTHO05D007283 2.1e-170 602.8 451 68.5
Cc02_g33090 Coffea canephora HOM05D005965 ORTHO05D007283 3.6e-170 602.1 452 70.1
Medtr7g113100 Medicago truncatula HOM05D005965 ORTHO05D007283 3.6e-170 602.1 449 67.0
Lalb_Chr18g0045721 Lupinus albus HOM05D005965 ORTHO05D007283 1.0e-169 600.5 449 66.8
Aqoxy2G02987 Aquilegia oxysepala HOM05D005965 ORTHO05D007283 6.7e-169 597.8 448 68.3
PSO151G0070 Papaver somniferum HOM05D005965 ORTHO05D007283 4.4e-168 595.1 449 68.6
PGR031G2641 Punica granatum HOM05D005965 ORTHO05D007283 2.8e-167 592.4 450 67.6
VMungo0540G0496 Vigna mungo HOM05D005965 ORTHO05D007283 6.3e-167 591.3 450 67.8
Hma1.2p1_1292F.1_g273670 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.8e-166 589.7 339 86.4
AL3G16080 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.4e-166 589.3 444 67.1
Psat0s4314g0040 Pisum sativum HOM05D005965 ORTHO05D007283 4.1e-166 588.6 473 62.8
Migut.G01001 Erythranthe guttata HOM05D005965 ORTHO05D007283 5.3e-166 588.2 447 68.9
Glyma.19G233800 Glycine max HOM05D005965 ORTHO05D007283 5.3e-166 588.2 450 67.6
TPR.G33209 Trifolium pratense HOM05D005965 ORTHO05D007283 1.6e-165 586.6 450 66.0
arahy.Tifrunner.gnm1.ann1.DHC6FB Arachis hypogaea HOM05D005965 ORTHO05D007283 5.9e-165 584.7 430 68.4
Thhalv10020753m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 5.9e-165 584.7 443 66.6
Glyma.03G236100 Glycine max HOM05D005965 ORTHO05D007283 1.0e-164 583.9 450 67.1
COL.COLO4_10514 Corchorus olitorius HOM05D005965 ORTHO05D007283 1.7e-164 583.2 377 77.7
AT3G05480 Arabidopsis thaliana HOM05D005965 ORTHO05D007283 2.2e-164 582.8 445 66.1
Lj9A144T46 Lonicera japonica HOM05D005965 ORTHO05D007283 5.0e-164 581.6 339 84.1
arahy.Tifrunner.gnm1.ann1.79NSX3 Arachis hypogaea HOM05D005965 ORTHO05D007283 1.1e-163 580.5 430 68.1
Carub.0003s0477 Capsella rubella HOM05D005965 ORTHO05D007283 1.1e-163 580.5 443 65.9
Eucgr.H04531 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.1e-163 580.5 453 66.0
Hund07094 Selenicereus undatus HOM05D005965 ORTHO05D007283 7.2e-163 577.8 457 65.0
THA.LOC104818713 Tarenaya hassleriana HOM05D005965 ORTHO05D007283 7.2e-163 577.8 447 65.5
EL10Ac4g09921 Beta vulgaris HOM05D005965 ORTHO05D007283 2.1e-162 576.2 453 65.8
BcaC05g30118 Brassica carinata HOM05D005965 ORTHO05D007283 6.1e-162 574.7 445 65.4
C05p61750 Brassica napus HOM05D005965 ORTHO05D007283 8.0e-162 574.3 445 65.4
Sp3g04310 Schrenkiella parvula HOM05D005965 ORTHO05D007283 2.3e-161 572.8 443 65.0
HanXRQChr03g0072671 Helianthus annuus HOM05D005965 ORTHO05D007283 8.8e-161 570.9 452 67.7
MBI19_g29225_MAGBIO Magnolia biondii HOM05D005965 ORTHO05D007283 2.6e-160 569.3 458 65.5
BcaC05g30164 Brassica carinata HOM05D005965 ORTHO05D007283 2.8e-159 565.8 471 63.1
FvH4_6g06510 Fragaria vesca HOM05D005965 ORTHO05D007283 1.1e-158 563.9 383 74.4
FAN05G3147 Fragaria x ananassa HOM05D005965 ORTHO05D007283 7.0e-158 561.2 383 74.2
HanXRQChr03g0072661 Helianthus annuus HOM05D005965 ORTHO05D007283 7.0e-158 561.2 473 64.7
BolC5t34833H Brassica oleracea HOM05D005965 ORTHO05D007283 3.5e-157 558.9 462 63.2
Phvul.006G090000 Phaseolus vulgaris HOM05D005965 ORTHO05D007283 7.7e-157 557.8 452 65.0
Ah.04g161100 Amaranthus hybridus HOM05D005965 ORTHO05D007283 9.4e-155 550.8 450 64.9
Hma1.2p1_1292F.1_g273680 Hydrangea macrophylla HOM05D005965 ORTHO05D007283 1.6e-154 550.1 334 82.3
unitig_699.g19668 Utricularia gibba HOM05D005965 ORTHO05D007283 1.0e-153 547.4 451 63.0
Lsat_1_v5_gn_9_124801 Lactuca sativa HOM05D005965 ORTHO05D007283 3.0e-153 545.8 465 63.9
Aa31LG5G15920 Aethionema arabicum HOM05D005965 ORTHO05D007283 4.1e-150 535.4 496 58.1
SGA_v2.0_scaffold172G38992 Striga asiatica HOM05D005965 ORTHO05D007283 4.1e-150 535.4 466 62.4
Migut.G01092 Erythranthe guttata HOM05D005965 ORTHO05D007283 7.7e-149 531.2 345 75.9
Ca_05803_v3 Cicer arietinum L. HOM05D005965 ORTHO05D007283 2.9e-148 529.3 404 66.8
Eucgr.H04558 Eucalyptus grandis HOM05D005965 ORTHO05D007283 5.7e-144 515.0 447 61.3
AUR62000770 Chenopodium quinoa HOM05D005965 ORTHO05D007283 4.1e-142 508.8 398 66.8
Thecc.05G312500 Theobroma cacao HOM05D005965 ORTHO05D007283 1.9e-139 500.0 370 70.0
HPP92_000400 Vanilla planifolia HOM05D005965 ORTHO05D007283 3.2e-134 482.6 455 57.8
ATR0796G244 Amborella trichopoda HOM05D005965 ORTHO05D007283 5.4e-134 481.9 460 57.2
HPP92_000403 Vanilla planifolia HOM05D005965 ORTHO05D007283 2.7e-133 479.6 474 55.3
Migut.G01320 Erythranthe guttata HOM05D005965 ORTHO05D007283 1.6e-130 470.3 340 70.6
SHI18108 Sapria himalayana HOM05D005965 ORTHO05D007283 2.9e-127 459.5 302 75.5
BraA05t23035Z Brassica rapa HOM05D005965 ORTHO05D007283 3.5e-125 452.6 355 64.5
Haze_04145 Corylus avellana HOM05D005965 ORTHO05D007283 2.5e-123 446.4 255 84.3
AUR62005199 Chenopodium quinoa HOM05D005965 ORTHO05D007283 3.3e-123 446.0 392 60.7
SEGI_33282 Sequoiadendron giganteum HOM05D005965 ORTHO05D007283 2.8e-122 443.0 478 51.9
MELO3C031536.2 Cucumis melo HOM05D005965 ORTHO05D007283 1.2e-120 437.6 368 62.8
Nitab4.5_0001057g0090 Nicotiana tabacum HOM05D005965 ORTHO05D007283 2.3e-116 423.3 348 64.1
Eucgr.H04576 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.8e-113 413.7 253 77.9
Os03g0345100 Oryza sativa ssp. japonica HOM05D005965 ORTHO05D007283 1.8e-113 413.7 463 49.7
CARHR079860 Cardamine hirsuta HOM05D005965 ORTHO05D007283 3.1e-113 412.9 255 76.1
CDE02G1352 Ceratophyllum demersum HOM05D005965 ORTHO05D007283 1.0e-108 397.9 372 55.9
Eucgr.H04573 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.8e-106 389.8 298 65.1
Eucgr.H04556 Eucalyptus grandis HOM05D005965 ORTHO05D007283 9.9e-104 381.3 429 52.7
Mapoly0078s0014 Marchantia polymorpha HOM05D005965 ORTHO05D007283 3.5e-101 372.9 350 55.4
Pp3c7_570 Physcomitrium patens HOM05D005965 ORTHO05D007283 1.1e-97 361.3 371 50.7
SMO134G0282 Selaginella moellendorffii HOM05D005965 ORTHO05D007283 4.0e-97 359.4 343 53.6
Pp3c15_2650 Physcomitrium patens HOM05D005965 ORTHO05D007283 4.5e-96 355.9 350 51.1
SHI32441 Sapria himalayana HOM05D005965 ORTHO05D007283 7.1e-94 348.6 319 60.5
BraA05t19070Z Brassica rapa HOM05D005965 ORTHO05D007283 1.2e-93 347.8 242 69.8
CBR_g180 Chara braunii HOM05D005965 ORTHO05D007283 1.2e-85 321.2 425 43.3
Zm00001eb016590 Zea mays HOM05D005965 ORTHO05D007283 1.6e-85 320.9 341 50.7
Eucgr.H04569 Eucalyptus grandis HOM05D005965 ORTHO05D007283 4.8e-82 309.3 450 44.2
Eucgr.H04571 Eucalyptus grandis HOM05D005965 ORTHO05D007283 1.3e-74 284.6 450 42.4
AL3G16050 Arabidopsis lyrata HOM05D005965 ORTHO05D007283 2.0e-56 224.2 293 44.0
Psat6g098120 Pisum sativum HOM05D005965 ORTHO05D007283 2.2e-55 220.7 161 65.8
Thecc.07G184800 Theobroma cacao HOM05D005965 ORTHO05D007283 2.7e-53 213.8 234 53.4
Thecc.07G184700 Theobroma cacao HOM05D005965 ORTHO05D007283 2.3e-52 210.7 192 62.5
Thhalv10022144m.g Eutrema salsugineum HOM05D005965 ORTHO05D007283 3.6e-45 186.8 292 42.5
CARHR079870 Cardamine hirsuta HOM05D005965 ORTHO05D007283 1.3e-39 168.3 190 52.6
Haze_04144 Corylus avellana HOM05D005965 ORTHO05D007283 1.1e-38 165.2 138 67.4
QL03p021253 Quercus lobata HOM05D005965 ORTHO05D007283 9.8e-35 152.1 93 76.3
PSO017G4250 Papaver somniferum HOM05D005965 ORTHO05D007283 1.4e-33 148.3 122 61.5
MCO01G074 Micromonas commoda HOM05D005965 ORTHO05D007283 2.5e-30 137.5 356 30.1
TAR633G2454 Trochodendron aralioides HOM05D005965 ORTHO05D007283 2.8e-29 134.0 134 56.7
Nitab4.5_0000524g0030 Nicotiana tabacum HOM05D005965 ORTHO05D007283 3.0e-28 130.6 208 44.2
DCAR_023086 Daucus carota HOM05D007620 ORTHO05D009568 8.3e-26 122.5 60 88.3
Cre16.g682950 Chlamydomonas reinhardtii HOM05D005965 ORTHO05D007283 1.6e-24 118.2 201 36.3
Eucgr.H04575 Eucalyptus grandis HOM05D005965 ORTHO05D007283 2.9e-23 114.0 125 48.0
TWI56G1489 Tripterygium wilfordii HOM05D005965 ORTHO05D007283 7.5e-19 99.4 73 71.2
PGSC0003DMG401006600 Solanum tuberosum HOM05D032728 ORTHO05D007283 3.5e-08 63.9 47 63.8
SMO274G0013 Selaginella moellendorffii HOM05D005965 ORTHO05D376736 7.3e-06 56.2 98 38.8


User provided reference genes

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