Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001750 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 1.8e-59 232.3 110 100.0
CSS0046577 Camellia sinensis var. sinensis HOM05D007943 ORTHO05D010047 4.6e-34 147.9 110 65.5
Ciclev10022962m.g Citrus clementina HOM05D007943 ORTHO05D010047 4.7e-23 111.3 110 51.8
Duzib133G1419 Durio zibethinus HOM05D007943 ORTHO05D010047 5.2e-22 107.8 108 51.9
TAR629G3284 Trochodendron aralioides HOM05D007943 ORTHO05D010047 1.3e-20 103.2 109 51.4
Oeu042966.1 Olea europaea HOM05D007943 ORTHO05D010047 3.2e-19 98.6 108 46.3
Thecc.01G335100 Theobroma cacao HOM05D007943 ORTHO05D010047 7.1e-19 97.4 92 50.0
GSVIVG01027420001 Vitis vinifera HOM05D007943 ORTHO05D010047 7.1e-19 97.4 106 48.1
Gohir.D07G139100 Gossypium hirsutum HOM05D007943 ORTHO05D010047 1.2e-18 96.7 108 49.1
Gorai.001G151200 Gossypium raimondii HOM05D007943 ORTHO05D010047 1.2e-18 96.7 108 49.1
FAN03G2903 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.6e-18 96.3 104 47.1
FAN10G0207 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.6e-18 96.3 104 46.2
FvH4_7g17420 Fragaria vesca HOM05D007943 ORTHO05D010047 2.7e-18 95.5 104 46.2
FAN06G1823 Fragaria x ananassa HOM05D007943 ORTHO05D010047 2.7e-18 95.5 104 46.2
RcHm_v2.0_Chr1g0360861 Rosa chinensis HOM05D007943 ORTHO05D010047 2.7e-18 95.5 103 46.6
FAN01G2944 Fragaria x ananassa HOM05D007943 ORTHO05D010047 4.6e-18 94.7 104 46.2
Manes.05G017800 Manihot esculenta HOM05D007943 ORTHO05D010047 4.6e-18 94.7 104 49.0
Nn3g18838 Nelumbo nucifera HOM05D007943 ORTHO05D010047 4.6e-18 94.7 100 43.0
Gohir.A07G134500 Gossypium hirsutum HOM05D007943 ORTHO05D010047 7.8e-18 94.0 108 47.2
MD01G1087200 Malus domestica HOM05D007943 ORTHO05D010047 7.8e-18 94.0 86 47.7
QL08p046777 Quercus lobata HOM05D007943 ORTHO05D010047 7.8e-18 94.0 96 46.9
FAN10G1708 Fragaria x ananassa HOM05D007943 ORTHO05D010047 1.3e-17 93.2 104 45.2
Potri.002G177700 Populus trichocarpa HOM05D007943 ORTHO05D010047 1.7e-17 92.8 82 51.2
CiPaw.01G081100 Carya illinoinensis HOM05D007943 ORTHO05D010047 3.0e-17 92.0 97 50.5
Atru.chr5.749 Acer truncatum HOM05D007943 ORTHO05D010047 8.7e-17 90.5 93 48.4
Cfa003750 Carpinus fangiana HOM05D007943 ORTHO05D010047 2.5e-16 89.0 91 49.5
MD07G1157400 Malus domestica HOM05D007943 ORTHO05D010047 3.3e-16 88.6 101 43.6
Gohir.A11G100000 Gossypium hirsutum HOM05D007943 ORTHO05D010047 4.3e-16 88.2 99 45.5
Prupe.2G195800 Prunus persica HOM05D007943 ORTHO05D010047 4.3e-16 88.2 81 50.6
Hund16743 Selenicereus undatus HOM05D007943 ORTHO05D010047 4.3e-16 88.2 96 42.7
Gohir.D11G104700 Gossypium hirsutum HOM05D007943 ORTHO05D010047 7.3e-16 87.4 92 46.7
Potri.014G104100 Populus trichocarpa HOM05D007943 ORTHO05D010047 9.6e-16 87.0 65 60.0
Gorai.007G112000 Gossypium raimondii HOM05D007943 ORTHO05D010047 2.1e-15 85.9 90 46.7
COL.COLO4_06217 Corchorus olitorius HOM05D007943 ORTHO05D010047 2.8e-15 85.5 89 49.4
Haze_15717 Corylus avellana HOM05D007943 ORTHO05D010047 6.2e-15 84.3 83 53.0
Lj3g0013373 Lotus japonicus HOM05D007943 ORTHO05D010047 1.8e-14 82.8 105 41.0
Rhsim01G0178600 Rhododendron simsii HOM05D007943 ORTHO05D010047 2.4e-14 82.4 82 50.0
Manes.01G241300 Manihot esculenta HOM05D007943 ORTHO05D010047 1.5e-13 79.7 85 47.1
Aqoxy7G00012 Aquilegia oxysepala HOM05D007943 ORTHO05D010047 7.6e-13 77.4 61 52.5
Sc23g0001870 Simmondsia chinensis HOM05D007943 ORTHO05D010047 7.6e-13 77.4 109 37.6
TAR375G0647 Trochodendron aralioides HOM05D007943 ORTHO05D010047 9.9e-13 77.0 77 49.4
Glyma.07G051200 Glycine max HOM05D007943 ORTHO05D010047 1.3e-12 76.6 107 39.3
AUR62004549 Chenopodium quinoa HOM05D007943 ORTHO05D010047 2.2e-12 75.9 96 42.7
Glyma.16G020300 Glycine max HOM05D007943 ORTHO05D010047 2.2e-12 75.9 105 39.0
Sabra02G0135900 Salix brachista HOM05D007943 ORTHO05D010047 4.9e-12 74.7 57 56.1
Lalb_Chr10g0100821 Lupinus albus HOM05D007943 ORTHO05D010047 9.3e-11 70.5 50 54.0
Phvul.006G116500 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 1.6e-10 69.7 110 37.3
Medtr8g024630 Medicago truncatula HOM05D007943 ORTHO05D010047 2.7e-10 68.9 102 35.3
Psat4g217240 Pisum sativum HOM05D007943 ORTHO05D010047 2.7e-10 68.9 50 54.0
TPR.G4732 Trifolium pratense HOM05D007943 ORTHO05D010047 2.7e-10 68.9 80 40.0
HPP92_015077 Vanilla planifolia HOM05D000968 ORTHO05D001687 6.0e-10 67.8 73 43.8
Sed0008180 Sechium edule HOM05D007943 ORTHO05D010047 1.3e-09 66.6 62 43.5
TPR.G25267 Trifolium pratense HOM05D007943 ORTHO05D010047 1.3e-09 66.6 70 45.7
CsaV3_3G007710 Cucumis sativus L. HOM05D007943 ORTHO05D010047 3.9e-09 65.1 105 37.1
DCAR_006654 Daucus carota HOM05D007943 ORTHO05D010047 5.1e-09 64.7 48 56.2
Lalb_Chr02g0157681 Lupinus albus HOM05D007943 ORTHO05D010047 8.7e-09 63.9 103 35.0
Os03g0126900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 1.5e-08 63.2 47 46.8
Solyc10g009260.1 Solanum lycopersicum HOM05D007943 ORTHO05D010047 2.5e-08 62.4 60 48.3
arahy.Tifrunner.gnm1.ann1.FJCJ23 Arachis hypogaea HOM05D007943 ORTHO05D010047 3.3e-08 62.0 71 38.0
Phvul.010G118200 Phaseolus vulgaris HOM05D007943 ORTHO05D010047 4.3e-08 61.6 64 43.8
A09p68930 Brassica napus HOM05D007943 ORTHO05D010047 7.3e-08 60.8 79 41.8
ClCG05G000500 Citrullus lanatus HOM05D007943 ORTHO05D010047 7.3e-08 60.8 78 41.0
BolC8t52866H Brassica oleracea HOM05D007943 ORTHO05D010047 9.6e-08 60.5 91 34.1
Os08g0113900 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 2.8e-07 58.9 41 56.1
Glyma.19G259000 Glycine max HOM05D007943 ORTHO05D010047 4.8e-07 58.2 71 39.4
MELO3C005988.2 Cucumis melo HOM05D007943 ORTHO05D010047 6.2e-07 57.8 63 41.3
CsaV3_3G007690 Cucumis sativus L. HOM05D007943 ORTHO05D010047 6.2e-07 57.8 63 41.3
Zm00001eb073340 Zea mays HOM05D007943 ORTHO05D010047 6.2e-07 57.8 45 46.7
Sed0006019 Sechium edule HOM05D007943 ORTHO05D010047 8.1e-07 57.4 53 45.3
AL1G11360 Arabidopsis lyrata HOM05D007943 ORTHO05D010047 1.1e-06 57.0 55 45.5
Carub.0001s0107 Capsella rubella HOM05D007943 ORTHO05D010047 1.1e-06 57.0 50 42.0
Glyma.03G260100 Glycine max HOM05D007943 ORTHO05D010047 1.1e-06 57.0 57 40.4
Os04g0577375 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 3.1e-06 55.5 42 45.2
Os03g0315200 Oryza sativa ssp. japonica HOM05D007943 ORTHO05D010047 5.3e-06 54.7 38 47.4
ATR0579G097 Amborella trichopoda HOM05D007943 ORTHO05D010047 6.9e-06 54.3 96 31.2


User provided reference genes

Program Settings