Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001742 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 0.0e+00 1150.2 565 100.0
Rhsim10G0001400 Rhododendron simsii HOM05D006071 ORTHO05D007462 5.8e-258 894.0 610 75.1
Dinv33279 Davidia involucrata HOM05D006071 ORTHO05D007462 5.6e-253 877.5 616 73.1
vmacro22244 Vaccinium macrocarpon HOM05D006071 ORTHO05D007462 1.6e-252 875.9 640 71.2
Hma1.2p1_0421F.1_g149970 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 4.6e-239 831.2 615 68.6
Lju41A60G26 Lonicera japonica HOM05D006071 ORTHO05D007462 2.1e-223 779.2 614 66.4
Actinidia36244 Actinidia chinensis HOM05D000877 ORTHO05D001509 1.5e-218 763.1 538 72.9
QL02p069613 Quercus lobata HOM05D006071 ORTHO05D007462 5.0e-217 758.1 596 66.9
Manes.11G077000 Manihot esculenta HOM05D006071 ORTHO05D007462 1.6e-215 753.1 605 66.3
Thecc.04G047500 Theobroma cacao HOM05D006071 ORTHO05D007462 9.7e-213 743.8 618 63.3
Potri.014G145300 Populus trichocarpa HOM05D006071 ORTHO05D007462 1.3e-212 743.4 604 64.1
Prupe.3G313200 Prunus persica HOM05D006071 ORTHO05D007462 4.8e-212 741.5 611 62.4
Haze_14947 Corylus avellana HOM05D006071 ORTHO05D007462 5.3e-211 738.0 653 60.8
Gorai.011G088400 Gossypium raimondii HOM05D006071 ORTHO05D007462 4.5e-210 734.9 619 62.5
Gohir.D10G081100 Gossypium hirsutum HOM05D006071 ORTHO05D007462 1.0e-209 733.8 619 62.4
Lsat_1_v5_gn_0_22580 Lactuca sativa HOM05D006071 ORTHO05D007462 7.2e-208 727.6 596 64.4
RcHm_v2.0_Chr2g0176461 Rosa chinensis HOM05D006071 ORTHO05D007462 1.6e-207 726.5 614 62.1
CANSAT64G2805 Cannabis sativa HOM05D006071 ORTHO05D007462 7.9e-207 724.2 614 62.2
Gohir.A10G070000 Gossypium hirsutum HOM05D006071 ORTHO05D007462 8.8e-206 720.7 626 62.0
Glyma.19G103000 Glycine max HOM05D006071 ORTHO05D007462 5.7e-205 718.0 617 61.8
Ciclev10014332m.g Citrus clementina HOM05D006071 ORTHO05D007462 4.8e-204 714.9 663 58.1
MD17G1007100 Malus domestica HOM05D006071 ORTHO05D007462 4.8e-204 714.9 618 60.0
DCAR_014471 Daucus carota HOM05D006071 ORTHO05D007462 1.1e-203 713.8 605 64.1
CiPaw.03G002300 Carya illinoinensis HOM05D006071 ORTHO05D007462 1.4e-203 713.4 609 62.9
FAN09G3006 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-203 713.4 617 61.1
MSTRG.15572 Avicennia marina HOM05D006071 ORTHO05D007462 5.3e-203 711.4 609 62.2
Cc07_g01250 Coffea canephora HOM05D006071 ORTHO05D007462 5.3e-203 711.4 617 60.8
Peaxi162Scf00420g00836 Petunia axillaris HOM05D006071 ORTHO05D007462 5.9e-202 708.0 614 61.4
Nn4g22141 Nelumbo nucifera HOM05D006071 ORTHO05D007462 7.7e-202 707.6 599 61.8
arahy.Tifrunner.gnm1.ann1.FMKW1Y Arachis hypogaea HOM05D006071 ORTHO05D007462 2.9e-201 705.7 614 59.9
Nitab4.5_0002172g0120 Nicotiana tabacum HOM05D006071 ORTHO05D007462 3.8e-201 705.3 608 60.7
ECA246G2252 Erigeron canadensis HOM05D006071 ORTHO05D007462 3.2e-200 702.2 598 62.5
TPR.G10339 Trifolium pratense HOM05D006071 ORTHO05D007462 5.5e-200 701.4 617 60.1
arahy.Tifrunner.gnm1.ann1.FR25D6 Arachis hypogaea HOM05D006071 ORTHO05D007462 1.2e-199 700.3 614 59.4
Nitab4.5_0000519g0320 Nicotiana tabacum HOM05D006071 ORTHO05D007462 1.0e-198 697.2 608 60.4
Sc07g0003750 Simmondsia chinensis HOM05D006071 ORTHO05D007462 1.0e-198 697.2 597 61.3
FAN14G4217 Fragaria x ananassa HOM05D006071 ORTHO05D007462 1.4e-198 696.8 649 58.1
Ah.03g136370 Amaranthus hybridus HOM05D006071 ORTHO05D007462 1.8e-198 696.4 608 60.4
Ca_08138_v3 Cicer arietinum L. HOM05D006071 ORTHO05D007462 1.8e-198 696.4 617 59.0
Lj1g0026027 Lotus japonicus HOM05D006071 ORTHO05D007462 2.3e-198 696.0 611 61.0
Glyma.16G048700 Glycine max HOM05D006071 ORTHO05D007462 3.9e-198 695.3 618 60.0
Sopen02g039190 Solanum pennellii HOM05D006071 ORTHO05D007462 1.5e-197 693.3 611 60.1
HanXRQChr17g0550941 Helianthus annuus HOM05D006071 ORTHO05D007462 3.3e-197 692.2 591 62.3
SGA_v2.0_scaffold47G17632 Striga asiatica HOM05D006071 ORTHO05D007462 2.2e-196 689.5 595 62.2
GSVIVG01032990001 Vitis vinifera HOM05D006071 ORTHO05D007462 2.8e-196 689.1 569 63.1
MBI07_g41894_MAGBIO Magnolia biondii HOM05D006071 ORTHO05D007462 2.4e-195 686.0 644 57.6
TWI32G0148 Tripterygium wilfordii HOM05D006071 ORTHO05D007462 3.1e-195 685.6 622 59.3
Phvul.001G084800 Phaseolus vulgaris HOM05D006071 ORTHO05D007462 9.1e-195 684.1 616 59.7
Duzib187G0315 Durio zibethinus HOM05D006071 ORTHO05D007462 3.5e-194 682.2 619 59.8
Hma1.2p1_0421F.1_g149975 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 3.5e-194 682.2 412 79.4
Migut.K01485 Erythranthe guttata HOM05D006071 ORTHO05D007462 5.9e-194 681.4 611 60.1
Lalb_Chr24g0403151 Lupinus albus HOM05D006071 ORTHO05D007462 7.7e-194 681.0 618 59.5
EL10Ac6g13395 Beta vulgaris HOM05D006071 ORTHO05D007462 3.8e-193 678.7 605 59.3
Medtr7g084020 Medicago truncatula HOM05D006071 ORTHO05D007462 3.8e-193 678.7 618 57.6
VMungo1383G1903 Vigna mungo HOM05D006071 ORTHO05D007462 3.8e-193 678.7 612 58.8
ClCG05G012640 Citrullus lanatus HOM05D006071 ORTHO05D007462 8.0e-191 671.0 606 58.9
MELO3C014817.2 Cucumis melo HOM05D006071 ORTHO05D007462 1.4e-190 670.2 607 59.8
PGR142G0457 Punica granatum HOM05D006071 ORTHO05D007462 2.3e-190 669.5 613 58.2
TAR629G1421 Trochodendron aralioides HOM05D006071 ORTHO05D007462 2.6e-189 666.0 595 60.2
AUR62037834 Chenopodium quinoa HOM05D006071 ORTHO05D007462 4.4e-189 665.2 608 59.9
Sabra14G0109500 Salix brachista HOM05D006071 ORTHO05D007462 7.5e-189 664.5 637 56.0
CsaV3_3G027770 Cucumis sativus L. HOM05D006071 ORTHO05D007462 9.7e-189 664.1 607 59.0
Sed0023591 Sechium edule HOM05D006071 ORTHO05D007462 1.3e-188 663.7 605 58.3
Hund04198 Selenicereus undatus HOM05D006071 ORTHO05D007462 3.7e-188 662.1 608 58.6
FAN02G4165 Fragaria x ananassa HOM05D006071 ORTHO05D007462 2.2e-185 652.9 580 59.8
MD09G1003000 Malus domestica HOM05D006071 ORTHO05D007462 2.2e-185 652.9 569 60.1
Aqoxy5G03151 Aquilegia oxysepala HOM05D006071 ORTHO05D007462 7.5e-181 637.9 622 56.8
Eucgr.I01601 Eucalyptus grandis HOM05D006071 ORTHO05D007462 5.4e-179 631.7 571 59.7
PSO017G0597 Papaver somniferum HOM05D006071 ORTHO05D007462 2.5e-176 622.9 625 54.2
PSO478G4855 Papaver somniferum HOM05D006071 ORTHO05D007462 2.5e-176 622.9 625 54.2
Aa31LG2G5830 Aethionema arabicum HOM05D006071 ORTHO05D007462 5.5e-176 621.7 618 55.3
THA.LOC104805300 Tarenaya hassleriana HOM05D006071 ORTHO05D007462 3.0e-174 615.9 614 54.4
Oeu003415.3 Olea europaea HOM05D006071 ORTHO05D007462 2.6e-173 612.8 645 54.1
FvH4_6g54271 Fragaria vesca HOM05D006071 ORTHO05D007462 7.5e-173 611.3 496 62.9
CARHR147750 Cardamine hirsuta HOM05D006071 ORTHO05D007462 8.3e-172 607.8 622 53.9
Thhalv10003691m.g Eutrema salsugineum HOM05D006071 ORTHO05D007462 1.4e-171 607.1 620 53.4
Carub.0005s0473 Capsella rubella HOM05D006071 ORTHO05D007462 2.4e-171 606.3 622 53.2
AL5G15580 Arabidopsis lyrata HOM05D006071 ORTHO05D007462 7.0e-171 604.7 619 53.5
BcaB07g30217 Brassica carinata HOM05D006071 ORTHO05D007462 1.2e-170 604.0 617 53.6
Sp2g15850 Schrenkiella parvula HOM05D006071 ORTHO05D007462 5.9e-170 601.7 614 54.2
AT3G26730 Arabidopsis thaliana HOM05D006071 ORTHO05D007462 8.6e-169 597.8 625 53.1
ATR0582G122 Amborella trichopoda HOM05D006071 ORTHO05D007462 6.1e-167 591.7 627 52.2
A02p34700 Brassica napus HOM05D006071 ORTHO05D007462 6.8e-166 588.2 621 52.7
BraA02t08478Z Brassica rapa HOM05D006071 ORTHO05D007462 8.9e-166 587.8 621 52.2
Os02g0516600 Oryza sativa ssp. japonica HOM05D006071 ORTHO05D007462 1.3e-164 583.9 599 54.3
C02p53260 Brassica napus HOM05D006071 ORTHO05D007462 7.0e-163 578.2 614 50.8
CDE05G0431 Ceratophyllum demersum HOM05D000877 ORTHO05D001509 5.9e-162 575.1 607 52.7
BcaC03g17381 Brassica carinata HOM05D006071 ORTHO05D007462 7.8e-162 574.7 610 50.7
BolC2t11398H Brassica oleracea HOM05D006071 ORTHO05D007462 6.6e-161 571.6 614 51.0
Zm00001eb242020 Zea mays HOM05D006071 ORTHO05D007462 1.2e-159 567.4 602 54.0
CSS0035612 Camellia sinensis var. sinensis HOM05D006071 ORTHO05D007462 2.9e-156 556.2 372 77.2
HPP92_024403 Vanilla planifolia HOM05D006071 ORTHO05D007462 1.3e-153 547.4 614 50.5
Hma1.2p1_0033F.1_g021090 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 1.2e-151 540.8 393 68.7
unitig_0.g2406 Utricularia gibba HOM05D006071 ORTHO05D007462 1.2e-135 487.6 445 58.7
Atru.chr6.2689 Acer truncatum HOM05D006071 ORTHO05D007462 2.4e-134 483.4 416 61.5
Psat3g093480 Pisum sativum HOM05D006071 ORTHO05D007462 1.3e-132 477.6 489 54.8
SEGI_23511 Sequoiadendron giganteum HOM05D006071 ORTHO05D007462 7.6e-125 451.8 669 42.5
AUR62041072 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.1e-123 448.0 379 60.7
Duzib147G1044 Durio zibethinus HOM05D006071 ORTHO05D007462 9.3e-115 418.3 574 46.7
Mapoly0006s0082 Marchantia polymorpha HOM05D006071 ORTHO05D007462 2.1e-114 417.2 608 39.8
SMO141G0304 Selaginella moellendorffii HOM05D006071 ORTHO05D007462 6.0e-114 415.6 627 41.9
COL.COLO4_13369 Corchorus olitorius HOM05D006071 ORTHO05D007462 1.5e-109 401.0 565 45.5
Pp3c20_8910 Physcomitrium patens HOM05D006071 ORTHO05D007462 4.8e-103 379.4 695 36.8
SHI11389 Sapria himalayana HOM05D006071 ORTHO05D007462 5.7e-96 355.9 381 49.9
Solyc02g094510.4 Solanum lycopersicum HOM05D006071 ORTHO05D007462 7.2e-83 312.4 292 58.6
CBR_g4363 Chara braunii HOM05D006071 ORTHO05D007462 2.1e-74 284.3 793 29.9
AagrBONN_evm.TU.Sc2ySwM_344.4297 Anthoceros agrestis HOM05D006071 ORTHO05D007462 1.8e-65 254.6 651 32.7
Psat2g052360 Pisum sativum HOM05D006071 ORTHO05D007462 5.0e-60 236.5 429 38.9
Psat2g087400 Pisum sativum HOM05D006071 ORTHO05D007462 2.2e-55 221.1 324 42.6
AUR62041071 Chenopodium quinoa HOM05D006071 ORTHO05D007462 1.8e-54 218.0 229 56.3
CDE05G1324 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 5.4e-46 189.9 235 46.0
HanXRQChr17g0550971 Helianthus annuus HOM05D006071 ORTHO05D007462 3.9e-44 183.7 189 55.0
MCO15G395 Micromonas commoda HOM05D006071 ORTHO05D007462 3.6e-34 150.6 722 24.8
Cre03.g144687 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.4e-30 137.9 621 22.9
Sc07g0003760 Simmondsia chinensis HOM05D006071 ORTHO05D007462 3.5e-29 134.0 132 56.1
Psat0s2046g0080 Pisum sativum HOM05D006071 ORTHO05D007462 6.0e-29 133.3 138 53.6
HanXRQChr17g0550951 Helianthus annuus HOM05D006071 ORTHO05D007462 1.0e-28 132.5 95 67.4
Actinidia09845 Actinidia chinensis HOM05D006071 ORTHO05D007462 3.6e-26 124.0 100 64.0
Psat0s2046g0120 Pisum sativum HOM05D006071 ORTHO05D007462 1.5e-24 118.6 317 31.5
Psat2g087520 Pisum sativum HOM05D006071 ORTHO05D007462 7.1e-22 109.8 149 45.6
Atru.chr6.2688 Acer truncatum HOM05D006071 ORTHO05D007462 1.5e-19 102.1 93 61.3
Lj1g0013684 Lotus japonicus HOM05D006071 ORTHO05D007462 1.9e-19 101.7 121 52.1
Atru.chr6.2690 Acer truncatum HOM05D006071 ORTHO05D007462 1.2e-16 92.4 56 76.8
Hma1.2p1_0868F.1_g230520 Hydrangea macrophylla HOM05D006071 ORTHO05D007462 2.1e-13 81.6 156 39.1
Cre16.g681251 Chlamydomonas reinhardtii HOM05D006071 ORTHO05D007462 2.7e-13 81.3 169 29.6
Actinidia09844 Actinidia chinensis HOM05D006071 ORTHO05D007462 4.6e-13 80.5 83 55.4
CDE05G2071 Ceratophyllum demersum HOM05D006071 ORTHO05D007462 3.9e-12 77.4 105 47.6
unitig_0.g2405 Utricularia gibba HOM05D006071 ORTHO05D007462 1.2e-08 65.9 94 48.9
BcaC04g23967 Brassica carinata HOM05D000463 ORTHO05D001294 1.7e-07 62.0 60 41.7
C09p02880 Brassica napus HOM05D000463 ORTHO05D001294 1.7e-07 62.0 60 41.7
BolC9t53213H Brassica oleracea HOM05D000463 ORTHO05D001294 1.7e-07 62.0 60 41.7
Peaxi162Scf00736g00046 Petunia axillaris HOM05D000463 ORTHO05D001294 1.7e-07 62.0 98 32.7
PGSC0003DMG400029719 Solanum tuberosum HOM05D000463 ORTHO05D001294 2.9e-07 61.2 88 35.2
Nitab4.5_0004411g0010 Nicotiana tabacum HOM05D000463 ORTHO05D001294 6.4e-07 60.1 60 41.7
Nitab4.5_0002158g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 8.4e-07 59.7 60 41.7
A09p02800 Brassica napus HOM05D000463 ORTHO05D001294 1.1e-06 59.3 60 40.0
BraA09t35921Z Brassica rapa HOM05D000463 ORTHO05D001294 1.1e-06 59.3 60 40.0
Nn7g35994 Nelumbo nucifera HOM05D000463 ORTHO05D002084 1.1e-06 59.3 111 28.8
Sabra19G0111000 Salix brachista HOM05D000463 ORTHO05D001294 1.1e-06 59.3 123 27.6
Sabra19G0112300 Salix brachista HOM05D000463 ORTHO05D001294 1.1e-06 59.3 123 27.6
Sopen02g023160 Solanum pennellii HOM05D000463 ORTHO05D001294 1.1e-06 59.3 117 29.1
Solyc02g078320.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 1.4e-06 58.9 88 35.2
BcaC02g09982 Brassica carinata HOM05D000463 ORTHO05D004638 1.9e-06 58.5 142 31.7
BolC4t24998H Brassica oleracea HOM05D000463 ORTHO05D004638 1.9e-06 58.5 142 31.7
Carub.0004s2436 Capsella rubella HOM05D000463 ORTHO05D004638 1.9e-06 58.5 144 25.0
ClCG11G018130 Citrullus lanatus HOM05D000463 ORTHO05D001294 1.9e-06 58.5 95 32.6
Nitab4.5_0013630g0020 Nicotiana tabacum HOM05D000463 ORTHO05D001294 1.9e-06 58.5 60 41.7
Cfa014606 Carpinus fangiana HOM05D000463 ORTHO05D001294 3.2e-06 57.8 104 27.9
Haze_13153 Corylus avellana HOM05D000463 ORTHO05D001294 3.2e-06 57.8 104 27.9
BcaB01g01944 Brassica carinata HOM05D000463 ORTHO05D001294 4.2e-06 57.4 60 40.0
Nitab4.5_0000207g0130 Nicotiana tabacum HOM05D000463 ORTHO05D001294 4.2e-06 57.4 67 37.3
PGSC0003DMG400015359 Solanum tuberosum HOM05D000463 ORTHO05D001294 4.2e-06 57.4 94 30.9
Dinv04312 Davidia involucrata HOM05D000114 ORTHO05D000075 5.4e-06 57.0 77 29.9
Nitab4.5_0002383g0090 Nicotiana tabacum HOM05D000463 ORTHO05D001294 5.4e-06 57.0 60 38.3
PSO017G5908 Papaver somniferum HOM05D000515 ORTHO05D005511 5.4e-06 57.0 71 42.3
Actinidia12815 Actinidia chinensis HOM05D000463 ORTHO05D001294 7.1e-06 56.6 114 27.2
Migut.M00816 Erythranthe guttata HOM05D000463 ORTHO05D001294 7.1e-06 56.6 60 36.7
Gohir.D04G143800 Gossypium hirsutum HOM05D000463 ORTHO05D001294 7.1e-06 56.6 60 40.0
Gorai.012G129300 Gossypium raimondii HOM05D000463 ORTHO05D001294 7.1e-06 56.6 60 40.0
Nitab4.5_0001551g0050 Nicotiana tabacum HOM05D000463 ORTHO05D001294 7.1e-06 56.6 67 37.3
Peaxi162Scf00069g01319 Petunia axillaris HOM05D000463 ORTHO05D001294 7.1e-06 56.6 67 38.8
Ah.14g089430 Amaranthus hybridus HOM05D000463 ORTHO05D001294 9.3e-06 56.2 104 28.8
MSTRG.6838 Avicennia marina HOM05D000463 ORTHO05D001294 9.3e-06 56.2 60 36.7
Dinv08303 Davidia involucrata HOM05D000463 ORTHO05D001294 9.3e-06 56.2 61 36.1
Dinv20167 Davidia involucrata HOM05D000463 ORTHO05D001294 9.3e-06 56.2 61 36.1
FvH4_6g22060 Fragaria vesca HOM05D000463 ORTHO05D004638 9.3e-06 56.2 120 29.2
Peaxi162Scf00027g00271 Petunia axillaris HOM05D000463 ORTHO05D001294 9.3e-06 56.2 60 38.3
Solyc12g013800.3 Solanum lycopersicum HOM05D000463 ORTHO05D001294 9.3e-06 56.2 94 30.9
Sopen12g007110 Solanum pennellii HOM05D000463 ORTHO05D001294 9.3e-06 56.2 94 30.9
unitig_744.g24406 Utricularia gibba HOM05D000463 ORTHO05D004638 9.3e-06 56.2 60 43.3


User provided reference genes

Program Settings