Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001731 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D003494 1.2e-61 239.6 118 100.0
CSS0029645 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D003494 4.8e-21 104.8 109 52.3
CSS0037292 Camellia sinensis var. sinensis HOM05D003001 ORTHO05D003494 4.8e-21 104.8 109 52.3
Aqoxy6G00717 Aquilegia oxysepala HOM05D003001 ORTHO05D003494 1.1e-20 103.6 109 51.4
Hma1.2p1_0784F.1_g217160 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 1.4e-20 103.2 105 52.4
Hma1.2p1_0784F.1_g217165 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 1.4e-20 103.2 105 52.4
Actinidia30837 Actinidia chinensis HOM05D003001 ORTHO05D003494 2.4e-20 102.4 105 49.5
TAR628G0470 Trochodendron aralioides HOM05D003001 ORTHO05D003494 3.1e-20 102.1 115 47.8
Glyma.08G070500 Glycine max HOM05D003001 ORTHO05D003494 5.3e-20 101.3 105 51.4
QL06p048139 Quercus lobata HOM05D003001 ORTHO05D003494 1.2e-19 100.1 105 51.4
Actinidia28043 Actinidia chinensis HOM05D003001 ORTHO05D003494 3.4e-19 98.6 115 47.8
Ciclev10024998m.g Citrus clementina HOM05D003001 ORTHO05D003494 3.4e-19 98.6 55 83.6
GSVIVG01003429001 Vitis vinifera HOM05D003001 ORTHO05D003494 3.4e-19 98.6 109 47.7
Lj5A234T86 Lonicera japonica HOM05D003001 ORTHO05D003494 4.5e-19 98.2 115 48.7
PGR004G1126 Punica granatum HOM05D003001 ORTHO05D003494 5.8e-19 97.8 55 81.8
Medtr4g094110 Medicago truncatula HOM05D003001 ORTHO05D003494 7.6e-19 97.4 55 81.8
CiPaw.03G145700 Carya illinoinensis HOM05D003001 ORTHO05D003494 9.9e-19 97.1 55 83.6
Dinv09007 Davidia involucrata HOM05D003001 ORTHO05D003494 9.9e-19 97.1 55 85.5
MBI02_g33225_MAGBIO Magnolia biondii HOM05D003001 ORTHO05D003494 9.9e-19 97.1 109 48.6
THA.LOC104807168 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 9.9e-19 97.1 111 47.7
Gohir.A12G015900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 1.3e-18 96.7 105 45.7
Nn1g05454 Nelumbo nucifera HOM05D003001 ORTHO05D003494 1.3e-18 96.7 115 47.8
Thecc.02G134100 Theobroma cacao HOM05D003001 ORTHO05D003494 1.7e-18 96.3 111 47.7
Lj4g0023349 Lotus japonicus HOM05D003001 ORTHO05D003494 2.2e-18 95.9 105 46.7
TAR625G1497 Trochodendron aralioides HOM05D003001 ORTHO05D003494 2.9e-18 95.5 115 46.1
EL10As13g24055 Beta vulgaris HOM05D003001 ORTHO05D003494 3.8e-18 95.1 105 49.5
Oeu019238.1 Olea europaea HOM05D003001 ORTHO05D003494 3.8e-18 95.1 115 47.0
MELO3C007738.2 Cucumis melo HOM05D003001 ORTHO05D003494 4.9e-18 94.7 55 80.0
DCAR_003467 Daucus carota HOM05D003001 ORTHO05D003494 4.9e-18 94.7 109 46.8
Prupe.6G193100 Prunus persica HOM05D003001 ORTHO05D003494 4.9e-18 94.7 55 80.0
VMungo0251G3475 Vigna mungo HOM05D003001 ORTHO05D003494 4.9e-18 94.7 55 78.2
CANSAT01G1533 Cannabis sativa HOM05D003001 ORTHO05D003494 6.4e-18 94.4 55 80.0
CsaV3_6G045250 Cucumis sativus L. HOM05D003001 ORTHO05D003494 6.4e-18 94.4 55 78.2
MD15G1320200 Malus domestica HOM05D003001 ORTHO05D003494 6.4e-18 94.4 55 80.0
Nn5g30003 Nelumbo nucifera HOM05D003001 ORTHO05D003494 8.4e-18 94.0 115 45.2
Cfa005658 Carpinus fangiana HOM05D003001 ORTHO05D003494 1.1e-17 93.6 109 46.8
Haze_24852 Corylus avellana HOM05D003001 ORTHO05D003494 1.1e-17 93.6 55 80.0
Eucgr.I00540 Eucalyptus grandis HOM05D003001 ORTHO05D003494 1.1e-17 93.6 55 78.2
Glyma.18G015100 Glycine max HOM05D003001 ORTHO05D003494 1.1e-17 93.6 55 78.2
Hma1.2p1_0019F.1_g013790 Hydrangea macrophylla HOM05D003001 ORTHO05D003494 1.1e-17 93.6 109 47.7
Lalb_Chr05g0217601 Lupinus albus HOM05D003001 ORTHO05D003494 1.1e-17 93.6 63 69.8
TPR.G2848 Trifolium pratense HOM05D003001 ORTHO05D003494 1.1e-17 93.6 54 77.8
Lsat_1_v5_gn_9_116840 Lactuca sativa HOM05D003001 ORTHO05D003494 1.4e-17 93.2 105 47.6
MD01G1035600 Malus domestica HOM05D003001 ORTHO05D003494 1.4e-17 93.2 55 78.2
BolC3t18338H Brassica oleracea HOM05D003001 ORTHO05D003494 1.9e-17 92.8 108 47.2
Cpa.g.sc55.75 Carica papaya HOM05D003001 ORTHO05D003494 1.9e-17 92.8 55 78.2
Dinv13233 Davidia involucrata HOM05D003001 ORTHO05D003494 1.9e-17 92.8 55 78.2
HanXRQChr13g0420801 Helianthus annuus HOM05D003001 ORTHO05D003494 1.9e-17 92.8 107 47.7
Os02g0758100 Oryza sativa ssp. japonica HOM05D003001 ORTHO05D003494 1.9e-17 92.8 55 78.2
vmacro19944 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 1.9e-17 92.8 115 47.0
Ca_16510_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 2.4e-17 92.4 55 76.4
FvH4_1g20250 Fragaria vesca HOM05D003001 ORTHO05D003494 2.4e-17 92.4 55 78.2
FAN19G2704 Fragaria x ananassa HOM05D003001 ORTHO05D003494 2.4e-17 92.4 55 78.2
FAN26G0078 Fragaria x ananassa HOM05D003001 ORTHO05D003494 2.4e-17 92.4 55 78.2
Gorai.008G016400 Gossypium raimondii HOM05D003001 ORTHO05D003494 2.4e-17 92.4 105 43.8
Psat5g090840 Pisum sativum HOM05D003001 ORTHO05D003494 2.4e-17 92.4 55 76.4
Hund14102 Selenicereus undatus HOM05D003001 ORTHO05D003494 2.4e-17 92.4 55 78.2
HPP92_011190 Vanilla planifolia HOM05D003001 ORTHO05D003494 2.4e-17 92.4 109 45.9
HPP92_011196 Vanilla planifolia HOM05D003001 ORTHO05D003494 2.4e-17 92.4 109 45.9
AUR62027205 Chenopodium quinoa HOM05D003001 ORTHO05D003494 3.2e-17 92.0 105 47.6
TWI74G1411 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 3.2e-17 92.0 55 78.2
Cfa002601 Carpinus fangiana HOM05D003001 ORTHO05D003494 4.2e-17 91.7 55 78.2
CiPaw.05G032800 Carya illinoinensis HOM05D003001 ORTHO05D003494 4.2e-17 91.7 55 78.2
ECA236G2627 Erigeron canadensis HOM05D003001 ORTHO05D003494 4.2e-17 91.7 55 80.0
Lj6g0000592 Lotus japonicus HOM05D003001 ORTHO05D003494 4.2e-17 91.7 55 76.4
Medtr3g086840 Medicago truncatula HOM05D003001 ORTHO05D003494 4.2e-17 91.7 55 76.4
Solyc01g105510.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 4.2e-17 91.7 115 44.3
TPR.G16016 Trifolium pratense HOM05D003001 ORTHO05D003494 4.2e-17 91.7 55 76.4
Duzib052G0813 Durio zibethinus HOM05D003001 ORTHO05D008190 5.4e-17 91.3 110 45.5
Lalb_Chr07g0185321 Lupinus albus HOM05D003001 ORTHO05D003494 5.4e-17 91.3 55 76.4
SalBow5G0007 Salvia bowleyana HOM05D003001 ORTHO05D003494 5.4e-17 91.3 115 43.5
SalBow5G4959 Salvia bowleyana HOM05D003001 ORTHO05D003494 5.4e-17 91.3 115 43.5
Sed0027008 Sechium edule HOM05D003001 ORTHO05D003494 5.4e-17 91.3 55 74.5
Glyma.11G242000 Glycine max HOM05D003001 ORTHO05D003494 7.1e-17 90.9 55 76.4
Gohir.D12G016200 Gossypium hirsutum HOM05D003001 ORTHO05D003494 7.1e-17 90.9 105 42.9
Lalb_Chr11g0075461 Lupinus albus HOM05D003001 ORTHO05D003494 7.1e-17 90.9 55 76.4
PSO210G4835 Papaver somniferum HOM05D003001 ORTHO05D003494 7.1e-17 90.9 55 78.2
Sed0022187 Sechium edule HOM05D003001 ORTHO05D003494 7.1e-17 90.9 55 76.4
unitig_748.g8484 Utricularia gibba HOM05D003001 ORTHO05D003494 7.1e-17 90.9 105 44.8
BcaB02g09889 Brassica carinata HOM05D003001 ORTHO05D003494 9.3e-17 90.5 55 76.4
Sc03g0000160 Simmondsia chinensis HOM05D003001 ORTHO05D003494 9.3e-17 90.5 105 48.6
TWI53G0751 Tripterygium wilfordii HOM05D003001 ORTHO05D003494 9.3e-17 90.5 111 45.9
vmacro18579 Vaccinium macrocarpon HOM05D003001 ORTHO05D003494 9.3e-17 90.5 55 78.2
Zm00001eb193930 Zea mays HOM05D003001 ORTHO05D003494 9.3e-17 90.5 55 78.2
Zm00001eb255460 Zea mays HOM05D003001 ORTHO05D003494 9.3e-17 90.5 55 78.2
CAN.G523.42 Capsicum annuum HOM05D003001 ORTHO05D003494 1.2e-16 90.1 115 43.5
Lj4g0024063 Lotus japonicus HOM05D003001 ORTHO05D003494 1.2e-16 90.1 55 76.4
Peaxi162Scf00044g01218 Petunia axillaris HOM05D003001 ORTHO05D003494 1.2e-16 90.1 55 78.2
C03p60790 Brassica napus HOM05D003001 ORTHO05D003494 1.6e-16 89.7 108 46.3
FAN23G1555 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.6e-16 89.7 55 76.4
FAN28G1326 Fragaria x ananassa HOM05D003001 ORTHO05D003494 1.6e-16 89.7 55 76.4
Manes.13G096600 Manihot esculenta HOM05D003001 ORTHO05D003494 1.6e-16 89.7 55 76.4
Phvul.002G260900 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 1.6e-16 89.7 55 74.5
Psat7g100360 Pisum sativum HOM05D003001 ORTHO05D003494 1.6e-16 89.7 54 77.8
Rhsim05G0104000 Rhododendron simsii HOM05D003001 ORTHO05D003494 1.6e-16 89.7 55 81.8
RcHm_v2.0_Chr2g0112391 Rosa chinensis HOM05D003001 ORTHO05D003494 1.6e-16 89.7 55 76.4
Sp2g28400 Schrenkiella parvula HOM05D003001 ORTHO05D003494 1.6e-16 89.7 108 45.4
AL8G42860 Arabidopsis lyrata HOM05D003001 ORTHO05D003494 2.1e-16 89.4 108 45.4
AT5G65290 Arabidopsis thaliana HOM05D003001 ORTHO05D003494 2.1e-16 89.4 108 45.4
MSTRG.15725 Avicennia marina HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 76.4
A06p32150 Brassica napus HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 74.5
BraA06t26143Z Brassica rapa HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 74.5
Carub.0008s2617 Capsella rubella HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 74.5
Ca_08989_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 76.4
COL.COLO4_27294 Corchorus olitorius HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 74.5
Gohir.D12G082300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.1e-16 89.4 104 48.1
Thecc.01G095700 Theobroma cacao HOM05D003001 ORTHO05D003494 2.1e-16 89.4 55 74.5
A02p43820 Brassica napus HOM05D003001 ORTHO05D003494 2.7e-16 89.0 108 44.4
BraA02t09307Z Brassica rapa HOM05D003001 ORTHO05D003494 2.7e-16 89.0 108 44.4
Thhalv10003703m.g Eutrema salsugineum HOM05D003001 ORTHO05D003494 2.7e-16 89.0 108 45.4
Solyc05g051490.3 Solanum lycopersicum HOM05D003001 ORTHO05D003494 2.7e-16 89.0 55 74.5
Sopen05g029900 Solanum pennellii HOM05D003001 ORTHO05D003494 2.7e-16 89.0 55 74.5
Aa31LG1G16660 Aethionema arabicum HOM05D003001 ORTHO05D003494 3.5e-16 88.6 55 72.7
arahy.Tifrunner.gnm1.ann1.90QG24 Arachis hypogaea HOM05D003001 ORTHO05D003494 3.5e-16 88.6 105 43.8
arahy.Tifrunner.gnm1.ann1.P5X8WX Arachis hypogaea HOM05D003001 ORTHO05D003494 3.5e-16 88.6 105 43.8
Duzib187G0783 Durio zibethinus HOM05D003001 ORTHO05D003494 3.5e-16 88.6 55 74.5
Lsat_1_v5_gn_7_82321 Lactuca sativa HOM05D003001 ORTHO05D003494 3.5e-16 88.6 55 76.4
Peaxi162Scf01060g00143 Petunia axillaris HOM05D003001 ORTHO05D003494 3.5e-16 88.6 55 76.4
Sopen01g047980 Solanum pennellii HOM05D003001 ORTHO05D003494 3.5e-16 88.6 115 43.5
TPR.G6243 Trifolium pratense HOM05D003001 ORTHO05D003494 3.5e-16 88.6 55 76.4
Atru.chr3.1345 Acer truncatum HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 76.4
Ah.02g126200 Amaranthus hybridus HOM05D003001 ORTHO05D003494 4.6e-16 88.2 105 46.7
arahy.Tifrunner.gnm1.ann1.FN9T2Y Arachis hypogaea HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 74.5
arahy.Tifrunner.gnm1.ann1.U0JFG5 Arachis hypogaea HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 74.5
BcaC03g18323 Brassica carinata HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 72.7
C02p63980 Brassica napus HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 72.7
BolC2t12465H Brassica oleracea HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 72.7
CARHR279250 Cardamine hirsuta HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 72.7
Nitab4.5_0000128g0230 Nicotiana tabacum HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 76.4
Nitab4.5_0012818g0020 Nicotiana tabacum HOM05D003001 ORTHO05D003494 4.6e-16 88.2 55 76.4
Potri.007G096900 Populus trichocarpa HOM05D003001 ORTHO05D003494 4.6e-16 88.2 105 47.6
SEGI_30052 Sequoiadendron giganteum HOM05D003001 ORTHO05D003494 4.6e-16 88.2 111 43.2
Cc07_g14610 Coffea canephora HOM05D003001 ORTHO05D003494 6.0e-16 87.8 107 45.8
Gorai.008G090800 Gossypium raimondii HOM05D003001 ORTHO05D003494 6.0e-16 87.8 55 74.5
Phvul.002G210800 Phaseolus vulgaris HOM05D003001 ORTHO05D003494 6.0e-16 87.8 55 72.7
Rhsim08G0013400 Rhododendron simsii HOM05D003001 ORTHO05D003494 6.0e-16 87.8 63 66.7
Sabra07G0080200 Salix brachista HOM05D003001 ORTHO05D003494 6.0e-16 87.8 55 76.4
VMungo0251G0868 Vigna mungo HOM05D003001 ORTHO05D003494 6.0e-16 87.8 55 72.7
Duzib147G0326 Durio zibethinus HOM05D003001 ORTHO05D003494 7.9e-16 87.4 55 72.7
Gohir.A11G204500 Gossypium hirsutum HOM05D003001 ORTHO05D003494 7.9e-16 87.4 55 72.7
Gohir.D11G218900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 7.9e-16 87.4 55 72.7
Gorai.007G235000 Gossypium raimondii HOM05D003001 ORTHO05D003494 7.9e-16 87.4 55 72.7
COL.COLO4_32311 Corchorus olitorius HOM05D003001 ORTHO05D003494 1.0e-15 87.0 55 74.5
Nitab4.5_0000863g0110 Nicotiana tabacum HOM05D003001 ORTHO05D003494 1.0e-15 87.0 55 72.7
THA.LOC104798827 Tarenaya hassleriana HOM05D003001 ORTHO05D003494 1.0e-15 87.0 55 70.9
Migut.L00160 Erythranthe guttata HOM05D003001 ORTHO05D003494 1.3e-15 86.7 107 45.8
Lsat_1_v5_gn_5_45321 Lactuca sativa HOM05D003001 ORTHO05D003494 1.8e-15 86.3 54 70.4
Gohir.A03G175300 Gossypium hirsutum HOM05D003001 ORTHO05D003494 2.3e-15 85.9 111 43.2
Nitab4.5_0003959g0040 Nicotiana tabacum HOM05D003001 ORTHO05D003494 2.3e-15 85.9 115 42.6
Potri.005G072100 Populus trichocarpa HOM05D003001 ORTHO05D003494 2.3e-15 85.9 55 74.5
ATR0684G114 Amborella trichopoda HOM05D003001 ORTHO05D003494 3.0e-15 85.5 54 74.1
CAN.G712.16 Capsicum annuum HOM05D003001 ORTHO05D003494 3.0e-15 85.5 55 72.7
Gohir.D02G198900 Gossypium hirsutum HOM05D003001 ORTHO05D003494 3.0e-15 85.5 111 43.2
Medtr8g089925 Medicago truncatula HOM05D003001 ORTHO05D003494 3.0e-15 85.5 55 72.7
Oeu012395.2 Olea europaea HOM05D003001 ORTHO05D003494 3.0e-15 85.5 55 72.7
MSTRG.3756 Avicennia marina HOM05D003001 ORTHO05D003494 3.9e-15 85.1 115 40.9
Zm00001eb279320 Zea mays HOM05D003001 ORTHO05D003494 3.9e-15 85.1 111 41.4
DCAR_001772 Daucus carota HOM05D003001 ORTHO05D003494 5.1e-15 84.7 98 45.9
unitig_61.g26059 Utricularia gibba HOM05D003001 ORTHO05D003494 6.7e-15 84.3 111 41.4
Gorai.005G222800 Gossypium raimondii HOM05D003001 ORTHO05D003494 8.7e-15 84.0 111 42.3
arahy.Tifrunner.gnm1.ann1.ZFLJ4E Arachis hypogaea HOM05D003001 ORTHO05D003494 1.1e-14 83.6 55 69.1
Glyma.08G133200 Glycine max HOM05D003001 ORTHO05D003494 1.1e-14 83.6 55 69.1
HanXRQChr12g0380961 Helianthus annuus HOM05D003001 ORTHO05D003494 1.1e-14 83.6 105 42.9
SalBow5G0708 Salvia bowleyana HOM05D003001 ORTHO05D003494 1.5e-14 83.2 55 70.9
Psat7g056400 Pisum sativum HOM05D003001 ORTHO05D003494 1.9e-14 82.8 55 72.7
arahy.Tifrunner.gnm1.ann1.7RAE92 Arachis hypogaea HOM05D003001 ORTHO05D003494 3.3e-14 82.0 55 69.1
ClCG01G018590 Citrullus lanatus HOM05D003001 ORTHO05D003494 5.6e-14 81.3 78 55.1
ECA246G2784 Erigeron canadensis HOM05D003001 ORTHO05D003494 9.6e-14 80.5 115 37.4
Sabra05G0059000 Salix brachista HOM05D003001 ORTHO05D003494 9.6e-14 80.5 55 70.9
Manes.12G130000 Manihot esculenta HOM05D003001 ORTHO05D003494 1.6e-13 79.7 54 70.4
arahy.Tifrunner.gnm1.ann1.IZH4BU Arachis hypogaea HOM05D003001 ORTHO05D003494 4.8e-13 78.2 51 70.6
AagrBONN_evm.TU.Sc2ySwM_228.804 Anthoceros agrestis HOM05D003001 ORTHO05D003494 9.0e-12 73.9 50 70.0
Mapoly0140s0040 Marchantia polymorpha HOM05D003001 ORTHO05D003494 9.0e-12 73.9 54 63.0
Pp3c11_13000 Physcomitrium patens HOM05D003001 ORTHO05D003494 1.3e-10 70.1 58 56.9
Pp3c1_14780 Physcomitrium patens HOM05D003001 ORTHO05D003494 1.1e-09 67.0 54 59.3
CBR_g24418 Chara braunii HOM05D003001 ORTHO05D003494 2.1e-08 62.8 47 68.1
SMO144G0094 Selaginella moellendorffii HOM05D003001 ORTHO05D003494 3.0e-07 58.9 50 58.0
Cc02_g21210 Coffea canephora HOM05D003001 ORTHO05D003494 5.6e-06 54.7 28 89.3
CDE10G0920 Ceratophyllum demersum HOM05D003001 ORTHO05D003494 7.4e-06 54.3 55 50.9
Ca_18366_v3 Cicer arietinum L. HOM05D003001 ORTHO05D003494 9.6e-06 53.9 33 72.7
Lj2A540G45 Lonicera japonica HOM05D003001 ORTHO05D003494 9.6e-06 53.9 33 75.8


User provided reference genes

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