Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001719 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D112825 1.2e-142 510.0 278 100.0
Lsat_1_v5_gn_9_74041 Lactuca sativa HOM05D001083 ORTHO05D006562 1.7e-16 90.9 196 39.3
CSS0030378 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 1.1e-15 88.2 181 37.6
Actinidia30816 Actinidia chinensis HOM05D001083 ORTHO05D006562 5.4e-15 85.9 165 38.8
CSS0034477 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 5.4e-15 85.9 165 38.8
CSS0045493 Camellia sinensis var. sinensis HOM05D001083 ORTHO05D006562 5.4e-15 85.9 165 38.8
TAR625G0337 Trochodendron aralioides HOM05D001083 ORTHO05D006562 9.2e-15 85.1 165 38.2
CDE10G0373 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 1.2e-14 84.7 165 38.2
Dinv44842 Davidia involucrata HOM05D001083 ORTHO05D006562 1.2e-14 84.7 165 38.2
Nn5g29925 Nelumbo nucifera HOM05D001083 ORTHO05D001637 1.2e-14 84.7 165 38.2
vmacro21321 Vaccinium macrocarpon HOM05D001083 ORTHO05D006562 1.6e-14 84.3 165 38.2
PSO017G5756 Papaver somniferum HOM05D001083 ORTHO05D006562 2.0e-14 84.0 165 37.6
PSO170G6218 Papaver somniferum HOM05D001083 ORTHO05D006562 2.0e-14 84.0 165 37.6
GSVIVG01009147001 Vitis vinifera HOM05D001083 ORTHO05D006562 2.0e-14 84.0 165 37.6
Atru.chr13.1040 Acer truncatum HOM05D001083 ORTHO05D006562 2.7e-14 83.6 165 37.6
QL09p017286 Quercus lobata HOM05D001083 ORTHO05D006562 2.7e-14 83.6 165 37.0
Ciclev10000603m.g Citrus clementina HOM05D001083 ORTHO05D006562 3.5e-14 83.2 165 37.0
Dinv42631 Davidia involucrata HOM05D001083 ORTHO05D006562 3.5e-14 83.2 165 37.6
MSTRG.22176 Avicennia marina HOM05D001083 ORTHO05D006562 4.6e-14 82.8 165 35.8
HanXRQChr09g0250891 Helianthus annuus HOM05D001083 ORTHO05D006562 4.6e-14 82.8 165 37.6
Rhsim06G0073600 Rhododendron simsii HOM05D001083 ORTHO05D006562 4.6e-14 82.8 165 37.6
Solyc04g076090.3 Solanum lycopersicum HOM05D001083 ORTHO05D006562 4.6e-14 82.8 165 37.0
Sopen00g007090 Solanum pennellii HOM05D001083 ORTHO05D006562 4.6e-14 82.8 165 37.0
PGSC0003DMG400012910 Solanum tuberosum HOM05D001083 ORTHO05D006562 4.6e-14 82.8 165 37.0
DCAR_009571 Daucus carota HOM05D001083 ORTHO05D006562 6.0e-14 82.4 165 37.0
Cc10_g15670 Coffea canephora HOM05D001083 ORTHO05D006562 7.8e-14 82.0 165 36.4
Potri.002G104000 Populus trichocarpa HOM05D001083 ORTHO05D006562 7.8e-14 82.0 165 37.0
SGA_v2.0_scaffold28G11891 Striga asiatica HOM05D001083 ORTHO05D006562 7.8e-14 82.0 181 35.4
CANSAT25G1784 Cannabis sativa HOM05D001083 ORTHO05D006562 1.0e-13 81.6 50 74.0
Cpa.g.sc309.3 Carica papaya HOM05D001083 ORTHO05D006562 1.0e-13 81.6 45 82.2
MD15G1382200 Malus domestica HOM05D001083 ORTHO05D006562 1.0e-13 81.6 165 37.0
Manes.02G146400 Manihot esculenta HOM05D001083 ORTHO05D006562 1.0e-13 81.6 165 34.5
TAR381G1629 Trochodendron aralioides HOM05D001083 ORTHO05D006562 1.0e-13 81.6 165 37.0
CARHR232010 Cardamine hirsuta HOM05D001083 ORTHO05D006562 1.3e-13 81.3 45 77.8
Cfa013696 Carpinus fangiana HOM05D001083 ORTHO05D001637 1.3e-13 81.3 165 35.8
Migut.N02863 Erythranthe guttata HOM05D001083 ORTHO05D006562 1.3e-13 81.3 50 74.0
Gohir.A05G220900 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.3e-13 81.3 50 74.0
Lj4C734G7 Lonicera japonica HOM05D001083 ORTHO05D006562 1.3e-13 81.3 165 35.8
MBI06_g36047_MAGBIO Magnolia biondii HOM05D001083 ORTHO05D006562 1.3e-13 81.3 165 35.2
MD08G1194100 Malus domestica HOM05D001083 ORTHO05D006562 1.3e-13 81.3 165 37.0
Sabra02G0081500 Salix brachista HOM05D001083 ORTHO05D006562 1.3e-13 81.3 165 36.4
Aqoxy5G01325 Aquilegia oxysepala HOM05D001083 ORTHO05D006562 1.7e-13 80.9 50 74.0
CANSAT80G2842 Cannabis sativa HOM05D001083 ORTHO05D006562 1.7e-13 80.9 50 72.0
AUR62019023 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.7e-13 80.9 44 84.1
AUR62027860 Chenopodium quinoa HOM05D001083 ORTHO05D006562 1.7e-13 80.9 44 84.1
ECA232G1336 Erigeron canadensis HOM05D001083 ORTHO05D006562 1.7e-13 80.9 165 37.0
Glyma.04G092400 Glycine max HOM05D001083 ORTHO05D006562 1.7e-13 80.9 165 35.8
Medtr5g065880 Medicago truncatula HOM05D001083 ORTHO05D006562 1.7e-13 80.9 50 72.0
Nn1g05517 Nelumbo nucifera HOM05D001083 ORTHO05D006562 1.7e-13 80.9 50 74.0
Oeu016836.1 Olea europaea HOM05D001083 ORTHO05D006562 1.7e-13 80.9 50 74.0
Phvul.009G143550 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 1.7e-13 80.9 165 35.8
Sed0003733 Sechium edule HOM05D001083 ORTHO05D006562 1.7e-13 80.9 50 74.0
SGA_v2.0_scaffold48G17819 Striga asiatica HOM05D001083 ORTHO05D006562 1.7e-13 80.9 165 35.8
VMungo1309G2048 Vigna mungo HOM05D001083 ORTHO05D006562 1.7e-13 80.9 165 35.8
Lalb_Chr11g0065091 Lupinus albus HOM05D001083 ORTHO05D006562 2.3e-13 80.5 50 72.0
Nitab4.5_0003300g0010 Nicotiana tabacum HOM05D001083 ORTHO05D006562 2.3e-13 80.5 45 80.0
Prupe.1G528400 Prunus persica HOM05D001083 ORTHO05D006562 2.3e-13 80.5 165 36.4
Sed0007911 Sechium edule HOM05D001083 ORTHO05D006562 2.3e-13 80.5 50 74.0
TAR381G0639 Trochodendron aralioides HOM05D001083 ORTHO05D006562 2.3e-13 80.5 165 36.4
Haze_22337 Corylus avellana HOM05D001083 ORTHO05D006562 3.0e-13 80.1 165 35.8
SMO115G0176 Selaginella moellendorffii HOM05D001083 ORTHO05D006562 3.0e-13 80.1 45 77.8
HPP92_024674 Vanilla planifolia HOM05D001083 ORTHO05D006562 3.0e-13 80.1 165 35.8
ATR0022G035 Amborella trichopoda HOM05D001083 ORTHO05D006562 3.9e-13 79.7 45 80.0
CAN.G1375.13 Capsicum annuum HOM05D001083 ORTHO05D006562 3.9e-13 79.7 50 70.0
CDE10G1263 Ceratophyllum demersum HOM05D001083 ORTHO05D006562 3.9e-13 79.7 50 72.0
ClCG08G011800 Citrullus lanatus HOM05D001083 ORTHO05D006562 3.9e-13 79.7 45 80.0
MELO3C011104.2 Cucumis melo HOM05D001083 ORTHO05D006562 3.9e-13 79.7 45 80.0
CsaV3_2G030420 Cucumis sativus L. HOM05D001083 ORTHO05D006562 3.9e-13 79.7 45 80.0
Glyma.06G094300 Glycine max HOM05D001083 ORTHO05D006562 3.9e-13 79.7 165 35.2
Hund16868 Selenicereus undatus HOM05D001083 ORTHO05D006562 3.9e-13 79.7 45 80.0
AL7G28580 Arabidopsis lyrata HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
AT4G24620 Arabidopsis thaliana HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
EL10Ac1g01079 Beta vulgaris HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
CiPaw.07G167500 Carya illinoinensis HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
Eucgr.F02133 Eucalyptus grandis HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
Gorai.009G230800 Gossypium raimondii HOM05D001083 ORTHO05D006562 5.0e-13 79.3 50 72.0
Lj1g0024653 Lotus japonicus HOM05D001083 ORTHO05D006562 5.0e-13 79.3 165 35.8
Peaxi162Scf00281g00319 Petunia axillaris HOM05D001083 ORTHO05D006562 5.0e-13 79.3 50 68.0
Pp3c27_3970 Physcomitrium patens HOM05D001083 ORTHO05D006562 5.0e-13 79.3 44 79.5
PGR031G0272 Punica granatum HOM05D001083 ORTHO05D006562 5.0e-13 79.3 50 70.0
RcHm_v2.0_Chr7g0237321 Rosa chinensis HOM05D001083 ORTHO05D006562 5.0e-13 79.3 165 35.8
Thecc.08G068600 Theobroma cacao HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
TWI36G0898 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 5.0e-13 79.3 45 77.8
Ca_05403_v3 Cicer arietinum L. HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
Glyma.02G212600 Glycine max HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
Lalb_Chr08g0242431 Lupinus albus HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
Nitab4.5_0000131g0420 Nicotiana tabacum HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
Phvul.008G180200 Phaseolus vulgaris HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
Psat2g066440 Pisum sativum HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
SEGI_39500 Sequoiadendron giganteum HOM05D001083 ORTHO05D006562 6.6e-13 79.0 73 54.8
Sc01g0001070 Simmondsia chinensis HOM05D001083 ORTHO05D006562 6.6e-13 79.0 44 81.8
TPR.G28355 Trifolium pratense HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
VMungo0647G1287 Vigna mungo HOM05D001083 ORTHO05D006562 6.6e-13 79.0 50 70.0
Aa31LG4G9700 Aethionema arabicum HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BcaC06g32870 Brassica carinata HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BcaC09g50847 Brassica carinata HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BcaNung04959 Brassica carinata HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
A01p15970 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
A03p55440 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
C01p19950 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
C07p53730 Brassica napus HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BolC1t01923H Brassica oleracea HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BolC7t45864H Brassica oleracea HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BraA01t01531Z Brassica rapa HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
BraA03t14618Z Brassica rapa HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
Carub.0007s1644 Capsella rubella HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
Thhalv10024695m.g Eutrema salsugineum HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 75.6
FAN18G1491 Fragaria x ananassa HOM05D001083 ORTHO05D006562 8.6e-13 78.6 165 35.8
SalBow2G2226 Salvia bowleyana HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 77.8
THA.LOC104806836 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 8.6e-13 78.6 45 73.3
FAN04G2240 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.1e-12 78.2 50 70.0
FAN08G3511 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.1e-12 78.2 165 35.2
Gohir.A06G032624 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.1e-12 78.2 50 70.0
Gohir.D06G032300 Gossypium hirsutum HOM05D001083 ORTHO05D006562 1.1e-12 78.2 50 70.0
Gorai.010G035600 Gossypium raimondii HOM05D001083 ORTHO05D006562 1.1e-12 78.2 50 70.0
LjContig00408g0023356 Lotus japonicus HOM05D001083 ORTHO05D006562 1.1e-12 78.2 50 68.0
Manes.18G060600 Manihot esculenta HOM05D001083 ORTHO05D006562 1.1e-12 78.2 165 35.2
RcHm_v2.0_Chr7g0237251 Rosa chinensis HOM05D001083 ORTHO05D006562 1.1e-12 78.2 165 35.2
RcHm_v2.0_Chr7g0237311 Rosa chinensis HOM05D001083 ORTHO05D006562 1.1e-12 78.2 165 35.2
Sp7g22610 Schrenkiella parvula HOM05D001083 ORTHO05D006562 1.1e-12 78.2 45 73.3
THA.LOC104800044 Tarenaya hassleriana HOM05D001083 ORTHO05D006562 1.1e-12 78.2 45 73.3
unitig_578.g16183 Utricularia gibba HOM05D001083 ORTHO05D006562 1.1e-12 78.2 86 46.5
Ah.05g170690 Amaranthus hybridus HOM05D001083 ORTHO05D006562 1.5e-12 77.8 45 75.6
FvH4_5g35680 Fragaria vesca HOM05D001083 ORTHO05D006562 1.5e-12 77.8 165 35.2
arahy.Tifrunner.gnm1.ann1.4HU4LR Arachis hypogaea HOM05D001083 ORTHO05D006562 1.9e-12 77.4 44 77.3
arahy.Tifrunner.gnm1.ann1.R1F113 Arachis hypogaea HOM05D001083 ORTHO05D006562 1.9e-12 77.4 44 77.3
FAN13G1737 Fragaria x ananassa HOM05D001083 ORTHO05D006562 1.9e-12 77.4 45 75.6
Gohir.D05G223666 Gossypium hirsutum HOM05D001083 ORTHO05D006562 2.5e-12 77.0 50 70.0
Mapoly0057s0092 Marchantia polymorpha HOM05D001083 ORTHO05D006562 2.5e-12 77.0 44 79.5
TWI12G0831 Tripterygium wilfordii HOM05D001083 ORTHO05D006562 2.5e-12 77.0 45 75.6
RcHm_v2.0_Chr7g0237271 Rosa chinensis HOM05D001083 ORTHO05D026514 4.3e-12 76.3 45 73.3
Os09g0465600 Oryza sativa ssp. japonica HOM05D001083 ORTHO05D006562 5.6e-12 75.9 50 66.0
Zm00001eb315420 Zea mays HOM05D001083 ORTHO05D006562 5.6e-12 75.9 50 66.0
RcHm_v2.0_Chr5g0052031 Rosa chinensis HOM05D001083 ORTHO05D026514 9.5e-12 75.1 45 73.3
RcHm_v2.0_Chr6g0245801 Rosa chinensis HOM05D001083 ORTHO05D026514 9.5e-12 75.1 45 73.3
Duzib041G0775 Durio zibethinus HOM05D001083 ORTHO05D006562 1.6e-11 74.3 51 70.6
Zm00001eb101090 Zea mays HOM05D001083 ORTHO05D006562 1.6e-11 74.3 44 75.0
Pp3c16_3900 Physcomitrium patens HOM05D001083 ORTHO05D006562 2.8e-11 73.6 44 72.7
SHI06379 Sapria himalayana HOM05D001083 ORTHO05D006562 2.2e-08 63.9 44 70.5


User provided reference genes

Program Settings