Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001689 Camellia sinensis var. sinensis HOM05D008443 ORTHO05D010587 2.5e-37 158.3 83 100.0
Manes.01G198240 Manihot esculenta HOM05D008443 ORTHO05D010587 7.0e-19 97.1 80 68.8
QL03p061920 Quercus lobata HOM05D008443 ORTHO05D010587 7.0e-19 97.1 82 68.3
Manes.05G088700 Manihot esculenta HOM05D008443 ORTHO05D010587 3.5e-18 94.7 83 65.1
CiPaw.05G147800 Carya illinoinensis HOM05D008443 ORTHO05D010587 2.1e-15 85.5 71 67.6
Nn3g16936 Nelumbo nucifera HOM05D008443 ORTHO05D010587 3.6e-15 84.7 63 69.8
MBI15_g19742_MAGBIO Magnolia biondii HOM05D008443 ORTHO05D010587 1.0e-14 83.2 54 75.9
Rhsim12G0048000 Rhododendron simsii HOM05D008443 ORTHO05D010587 3.0e-14 81.6 79 62.0
Gohir.A05G318400 Gossypium hirsutum HOM05D008443 ORTHO05D010587 5.2e-14 80.9 77 64.9
Gorai.005G184100 Gossypium raimondii HOM05D008443 ORTHO05D010587 5.2e-14 80.9 83 54.2
CANSAT01G1518 Cannabis sativa HOM05D008443 ORTHO05D010587 6.8e-14 80.5 64 71.9
Gohir.A03G141200 Gossypium hirsutum HOM05D008443 ORTHO05D010587 2.0e-13 79.0 78 56.4
Duzib268G1406 Durio zibethinus HOM05D008443 ORTHO05D010587 4.4e-13 77.8 72 62.5
MD16G1089300 Malus domestica HOM05D008443 ORTHO05D010587 4.4e-13 77.8 52 78.8
PGR102G0936 Punica granatum HOM05D008443 ORTHO05D010587 4.4e-13 77.8 65 66.2
Phvul.003G053700 Phaseolus vulgaris HOM05D008443 ORTHO05D010587 7.5e-13 77.0 76 53.9
Gohir.D05G320600 Gossypium hirsutum HOM05D008443 ORTHO05D010587 9.8e-13 76.6 77 58.4
Prupe.1G256700 Prunus persica HOM05D008443 ORTHO05D010587 9.8e-13 76.6 52 76.9
Aqoxy3G03049 Aquilegia oxysepala HOM05D008443 ORTHO05D010587 1.3e-12 76.3 67 61.2
ClCG05G025160 Citrullus lanatus HOM05D008443 ORTHO05D010587 1.7e-12 75.9 79 57.0
Gohir.D02G164100 Gossypium hirsutum HOM05D008443 ORTHO05D010587 1.7e-12 75.9 78 55.1
Lsat_1_v5_gn_3_47940 Lactuca sativa HOM05D008443 ORTHO05D010587 2.8e-12 75.1 71 59.2
TPR.G35976 Trifolium pratense HOM05D008443 ORTHO05D010587 3.7e-12 74.7 76 57.9
Gorai.009G343700 Gossypium raimondii HOM05D008443 ORTHO05D010587 6.3e-12 73.9 78 57.7
Glyma.08G289300 Glycine max HOM05D008443 ORTHO05D010587 1.1e-11 73.2 76 53.9
Eucgr.B03356 Eucalyptus grandis HOM05D008443 ORTHO05D010587 1.4e-11 72.8 69 60.9
MD13G1089100 Malus domestica HOM05D008443 ORTHO05D010587 1.4e-11 72.8 52 75.0
MELO3C012013.2 Cucumis melo HOM05D008443 ORTHO05D010587 1.8e-11 72.4 51 70.6
TWI36G1347 Tripterygium wilfordii HOM05D008443 ORTHO05D010587 1.8e-11 72.4 74 54.1
TAR629G3213 Trochodendron aralioides HOM05D008443 ORTHO05D010587 1.8e-11 72.4 78 52.6
Glyma.18G135000 Glycine max HOM05D008443 ORTHO05D010587 4.1e-11 71.2 76 52.6
Dinv31086 Davidia involucrata HOM05D000086 ORTHO05D000983 5.4e-11 70.9 69 62.3
Dinv24885 Davidia involucrata HOM05D000086 ORTHO05D000983 1.6e-10 69.3 52 73.1
Lalb_Chr16g0382381 Lupinus albus HOM05D008443 ORTHO05D010587 2.7e-10 68.6 80 53.8
CsaV3_5G031740 Cucumis sativus L. HOM05D008443 ORTHO05D010587 3.5e-10 68.2 76 55.3
MSTRG.2385 Avicennia marina HOM05D008443 ORTHO05D010587 4.5e-10 67.8 66 57.6
VMungo0251G0489 Vigna mungo HOM05D008443 ORTHO05D010587 4.5e-10 67.8 76 50.0
FAN17G0561 Fragaria x ananassa HOM05D008443 ORTHO05D010587 1.7e-09 65.9 50 64.0
FAN22G1825 Fragaria x ananassa HOM05D008443 ORTHO05D010587 1.7e-09 65.9 50 64.0
RcHm_v2.0_Chr4g0444191 Rosa chinensis HOM05D008443 ORTHO05D010587 1.7e-09 65.9 50 66.0
Medtr8g063410 Medicago truncatula HOM05D008443 ORTHO05D010587 5.0e-09 64.3 75 50.7
Sc11g0001310 Simmondsia chinensis HOM05D008443 ORTHO05D010587 1.1e-08 63.2 62 56.5
CDE07G0196 Ceratophyllum demersum HOM05D008443 ORTHO05D010587 1.5e-08 62.8 67 53.7
Haze_07480 Corylus avellana HOM05D008443 ORTHO05D010587 1.9e-08 62.4 82 43.9
AUR62013990 Chenopodium quinoa HOM05D008443 ORTHO05D010587 2.5e-08 62.0 77 48.1
Cfa019086 Carpinus fangiana HOM05D008443 ORTHO05D010587 3.2e-08 61.6 84 47.6
Aa31LG7G7790 Aethionema arabicum HOM05D009339 ORTHO05D011480 9.4e-08 60.1 54 55.6
COL.COLO4_24771 Corchorus olitorius HOM05D008443 ORTHO05D010587 9.4e-08 60.1 81 48.1
Lj2g0011197 Lotus japonicus HOM05D008443 ORTHO05D010587 9.4e-08 60.1 79 46.8
SEGI_04815 Sequoiadendron giganteum HOM05D008443 ORTHO05D010587 6.1e-07 57.4 46 63.0
ATR1149G093 Amborella trichopoda HOM05D008443 ORTHO05D010587 8.0e-07 57.0 51 51.0
THA.LOC109117024 Tarenaya hassleriana HOM05D009339 ORTHO05D011480 1.0e-06 56.6 64 48.4
Thecc.03G007600 Theobroma cacao HOM05D008443 ORTHO05D010587 1.0e-06 56.6 89 43.8
AT1G23965 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 2.3e-06 55.5 74 41.9
DCAR_031087 Daucus carota HOM05D008443 ORTHO05D010587 5.2e-06 54.3 49 59.2
AT1G23995 Arabidopsis thaliana HOM05D009339 ORTHO05D011480 6.8e-06 53.9 74 41.9


User provided reference genes

Program Settings