Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001650 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 3.1e-36 154.5 71 100.0
CSS0024590 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 2.9e-34 147.9 72 97.2
CSS0027476 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 2.9e-34 147.9 72 97.2
CSS0034315 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 6.6e-34 146.7 68 98.5
Migut.I01181 Erythranthe guttata HOM05D002778 ORTHO05D003112 3.9e-18 94.4 64 62.5
FAN05G2325 Fragaria x ananassa HOM05D000059 ORTHO05D000128 1.5e-17 92.4 64 64.1
MD09G1160500 Malus domestica HOM05D002778 ORTHO05D003112 4.3e-17 90.9 68 54.4
CiPaw.01G088700 Carya illinoinensis HOM05D002778 ORTHO05D003112 9.5e-17 89.7 63 55.6
Ciclev10026904m.g Citrus clementina HOM05D002778 ORTHO05D003112 3.6e-16 87.8 63 57.1
QL05p082346 Quercus lobata HOM05D002778 ORTHO05D003112 6.2e-16 87.0 67 56.7
Potri.010G251000 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.1e-15 86.3 63 55.6
RcHm_v2.0_Chr2g0149751 Rosa chinensis HOM05D002778 ORTHO05D003112 1.8e-15 85.5 64 57.8
Prupe.3G019100 Prunus persica HOM05D002778 ORTHO05D003112 5.2e-15 84.0 67 53.7
Cfa020956 Carpinus fangiana HOM05D002778 ORTHO05D003112 2.0e-14 82.0 62 56.5
MD17G1146300 Malus domestica HOM05D002778 ORTHO05D003112 5.8e-14 80.5 65 53.8
Potri.008G007932 Populus trichocarpa HOM05D002778 ORTHO05D003112 7.5e-14 80.1 63 55.6
Potri.008G007800 Populus trichocarpa HOM05D002778 ORTHO05D003112 2.9e-13 78.2 63 54.0
GSVIVG01029639001 Vitis vinifera HOM05D002778 ORTHO05D003112 1.6e-11 72.4 63 52.4
Hma1.2p1_1961F.1_g309120 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 6.0e-11 70.5 58 50.0
Hma1.2p1_2332F.1_g320100 Hydrangea macrophylla HOM05D002778 ORTHO05D003112 6.0e-11 70.5 58 50.0
Lsat_1_v5_gn_3_19520 Lactuca sativa HOM05D002778 ORTHO05D003112 1.7e-10 68.9 58 48.3
SalBow4G0971 Salvia bowleyana HOM05D002778 ORTHO05D003112 3.0e-10 68.2 58 53.4
Cpa.g.sc23.21 Carica papaya HOM05D002778 ORTHO05D003112 3.9e-10 67.8 58 50.0
MBI16_g36963_MAGBIO Magnolia biondii HOM05D002778 ORTHO05D003112 3.9e-10 67.8 58 46.6
Eucgr.C02015 Eucalyptus grandis HOM05D002778 ORTHO05D003112 5.1e-10 67.4 58 46.6
Thecc.09G007900 Theobroma cacao HOM05D002778 ORTHO05D003112 5.1e-10 67.4 58 50.0
Solyc02g081560.1 Solanum lycopersicum HOM05D002778 ORTHO05D003112 6.6e-10 67.0 58 44.8
COL.COLO4_19026 Corchorus olitorius HOM05D002778 ORTHO05D003112 8.6e-10 66.6 58 50.0
PSO063G5619 Papaver somniferum HOM05D002778 ORTHO05D003112 1.1e-09 66.2 53 50.9
CiPaw.07G212100 Carya illinoinensis HOM05D002778 ORTHO05D003112 1.5e-09 65.9 58 50.0
Manes.15G098500 Manihot esculenta HOM05D002778 ORTHO05D003112 1.5e-09 65.9 58 48.3
Eucgr.C02016 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.9e-09 65.5 58 46.6
Eucgr.J02702 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.9e-09 65.5 58 46.6
Gohir.D05G066400 Gossypium hirsutum HOM05D002778 ORTHO05D003112 1.9e-09 65.5 58 48.3
Gorai.009G067200 Gossypium raimondii HOM05D002778 ORTHO05D003112 1.9e-09 65.5 58 48.3
Duzib187G1568 Durio zibethinus HOM05D002778 ORTHO05D003112 2.5e-09 65.1 58 46.6
CAN.G809.78 Capsicum annuum HOM05D002778 ORTHO05D003112 4.3e-09 64.3 58 41.4
Cfa013278 Carpinus fangiana HOM05D002778 ORTHO05D003112 4.3e-09 64.3 53 50.9
Gohir.A05G063800 Gossypium hirsutum HOM05D002778 ORTHO05D003112 4.3e-09 64.3 58 46.6
Nn8g40687 Nelumbo nucifera HOM05D002778 ORTHO05D003112 4.3e-09 64.3 58 43.1
PGR102G1539 Punica granatum HOM05D002778 ORTHO05D003112 4.3e-09 64.3 58 44.8
Glyma.14G134900 Glycine max HOM05D002778 ORTHO05D003112 5.6e-09 63.9 58 44.8
MD15G1107300 Malus domestica HOM05D002778 ORTHO05D003112 5.6e-09 63.9 58 44.8
Manes.03G079400 Manihot esculenta HOM05D002778 ORTHO05D003112 5.6e-09 63.9 58 44.8
Manes.14G162900 Manihot esculenta HOM05D002778 ORTHO05D003112 5.6e-09 63.9 56 48.2
CSS0015542 Camellia sinensis var. sinensis HOM05D002778 ORTHO05D003112 7.3e-09 63.5 62 41.9
HanXRQChr17g0538041 Helianthus annuus HOM05D002778 ORTHO05D003112 7.3e-09 63.5 58 43.1
Lalb_Chr08g0243521 Lupinus albus HOM05D002778 ORTHO05D003112 7.3e-09 63.5 58 43.1
Phvul.009G234900 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 7.3e-09 63.5 63 46.0
Potri.018G007300 Populus trichocarpa HOM05D002778 ORTHO05D003112 7.3e-09 63.5 58 41.4
Manes.06G018000 Manihot esculenta HOM05D002778 ORTHO05D003112 9.5e-09 63.2 56 48.2
PSO170G3710 Papaver somniferum HOM05D002778 ORTHO05D003112 9.5e-09 63.2 53 49.1
Sed0013186 Sechium edule HOM05D002778 ORTHO05D003112 9.5e-09 63.2 63 36.5
TWI36G0848 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 9.5e-09 63.2 58 44.8
MD16G1246800 Malus domestica HOM05D002778 ORTHO05D003112 1.2e-08 62.8 63 42.9
Manes.09G005702 Manihot esculenta HOM05D002778 ORTHO05D003112 1.6e-08 62.4 56 46.4
Potri.006G073400 Populus trichocarpa HOM05D002778 ORTHO05D003112 1.6e-08 62.4 56 46.4
TPR.G7055 Trifolium pratense HOM05D002778 ORTHO05D003112 1.6e-08 62.4 58 44.8
Haze_21753 Corylus avellana HOM05D002778 ORTHO05D003112 2.1e-08 62.0 58 44.8
Manes.06G017900 Manihot esculenta HOM05D002778 ORTHO05D003112 2.1e-08 62.0 56 48.2
Prupe.1G459600 Prunus persica HOM05D002778 ORTHO05D003112 2.1e-08 62.0 53 47.2
PGR142G4130 Punica granatum HOM05D002778 ORTHO05D003112 2.8e-08 61.6 53 49.1
Ciclev10010727m.g Citrus clementina HOM05D002778 ORTHO05D003112 3.6e-08 61.2 58 43.1
Cc01_g10000 Coffea canephora HOM05D002778 ORTHO05D003112 3.6e-08 61.2 58 44.8
Eucgr.F04019 Eucalyptus grandis HOM05D002778 ORTHO05D003112 3.6e-08 61.2 62 43.5
Potri.018G140500 Populus trichocarpa HOM05D002778 ORTHO05D003112 3.6e-08 61.2 56 44.6
Medtr2g038220 Medicago truncatula HOM05D002778 ORTHO05D003112 4.7e-08 60.8 58 44.8
Medtr3g108890 Medicago truncatula HOM05D002778 ORTHO05D003112 4.7e-08 60.8 53 45.3
RcHm_v2.0_Chr4g0399141 Rosa chinensis HOM05D002778 ORTHO05D003112 4.7e-08 60.8 63 42.9
QL12p025213 Quercus lobata HOM05D002778 ORTHO05D003112 6.2e-08 60.5 58 43.1
Solyc07g008430.2 Solanum lycopersicum HOM05D002778 ORTHO05D003112 6.2e-08 60.5 63 42.9
Sopen07g004330 Solanum pennellii HOM05D002778 ORTHO05D003112 6.2e-08 60.5 63 42.9
MELO3C011187.2 Cucumis melo HOM05D002778 ORTHO05D003112 8.1e-08 60.1 58 41.4
Glyma.17G197800 Glycine max HOM05D002778 ORTHO05D003112 8.1e-08 60.1 58 41.4
Nn8g40694 Nelumbo nucifera HOM05D002778 ORTHO05D003112 8.1e-08 60.1 58 41.4
Oeu012391.1 Olea europaea HOM05D002778 ORTHO05D003112 8.1e-08 60.1 53 47.2
RcHm_v2.0_Chr6g0305041 Rosa chinensis HOM05D002778 ORTHO05D003112 8.1e-08 60.1 58 46.6
Aa31LG3G16440 Aethionema arabicum HOM05D002778 ORTHO05D003112 1.1e-07 59.7 58 46.6
Lalb_Chr23g0276751 Lupinus albus HOM05D002778 ORTHO05D003112 1.1e-07 59.7 60 43.3
PGSC0003DMG400021029 Solanum tuberosum HOM05D002778 ORTHO05D003112 1.1e-07 59.7 63 42.9
TPR.G12466 Trifolium pratense HOM05D002778 ORTHO05D003112 1.1e-07 59.7 53 43.4
Ca_21261_v3 Cicer arietinum L. HOM05D002778 ORTHO05D003112 1.4e-07 59.3 58 41.4
Medtr4g127190 Medicago truncatula HOM05D002778 ORTHO05D003112 1.4e-07 59.3 58 41.4
TWI75G0683 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 1.4e-07 59.3 53 47.2
Ca_15657_v3 Cicer arietinum L. HOM05D000122 ORTHO05D000139 1.8e-07 58.9 53 41.5
Eucgr.C02014 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.8e-07 58.9 58 41.4
Glyma.06G077000 Glycine max HOM05D002778 ORTHO05D003112 1.8e-07 58.9 58 41.4
Medtr4g127200 Medicago truncatula HOM05D002778 ORTHO05D003112 1.8e-07 58.9 58 41.4
Prupe.1G073400 Prunus persica HOM05D002778 ORTHO05D003112 1.8e-07 58.9 63 39.7
Thhalv10016058m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 2.4e-07 58.5 58 46.6
TWI31G1116 Tripterygium wilfordii HOM05D002778 ORTHO05D003112 2.4e-07 58.5 53 47.2
Glyma.09G060700 Glycine max HOM05D002778 ORTHO05D003112 3.1e-07 58.2 60 43.3
PSO063G3231 Papaver somniferum HOM05D002778 ORTHO05D003112 3.1e-07 58.2 53 47.2
PSO170G0913 Papaver somniferum HOM05D002778 ORTHO05D003112 3.1e-07 58.2 53 47.2
Phvul.001G059600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 3.1e-07 58.2 58 43.1
Phvul.009G101600 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 3.1e-07 58.2 53 45.3
Sed0006590 Sechium edule HOM05D002778 ORTHO05D003112 3.1e-07 58.2 58 39.7
CiPaw.08G020200 Carya illinoinensis HOM05D002778 ORTHO05D003112 4.0e-07 57.8 58 41.4
DCAR_018016 Daucus carota HOM05D002778 ORTHO05D003112 4.0e-07 57.8 60 43.3
Lj4g0026496 Lotus japonicus HOM05D002778 ORTHO05D003112 4.0e-07 57.8 58 39.7
MD13G1240400 Malus domestica HOM05D002778 ORTHO05D003112 4.0e-07 57.8 58 41.4
TPR.G5389 Trifolium pratense HOM05D002778 ORTHO05D003112 4.0e-07 57.8 54 44.4
Glyma.13G101500 Glycine max HOM05D002778 ORTHO05D003112 5.2e-07 57.4 58 43.1
Glyma.15G167300 Glycine max HOM05D002778 ORTHO05D003112 5.2e-07 57.4 60 41.7
Glyma.17G058100 Glycine max HOM05D002778 ORTHO05D003112 5.2e-07 57.4 58 43.1
Lj6g0016516 Lotus japonicus HOM05D002778 ORTHO05D003112 5.2e-07 57.4 58 43.1
Lalb_Chr13g0299861 Lupinus albus HOM05D002778 ORTHO05D003112 5.2e-07 57.4 58 41.4
Phvul.003G140426 Phaseolus vulgaris HOM05D002778 ORTHO05D003112 6.8e-07 57.0 58 41.4
Lsat_1_v5_gn_4_26480 Lactuca sativa HOM05D002778 ORTHO05D003112 8.9e-07 56.6 50 48.0
Manes.04G056300 Manihot esculenta HOM05D002778 ORTHO05D003112 8.9e-07 56.6 63 39.7
Sed0003600 Sechium edule HOM05D002778 ORTHO05D003112 8.9e-07 56.6 58 39.7
CAN.G837.3 Capsicum annuum HOM05D002778 ORTHO05D003112 1.2e-06 56.2 58 41.4
Eucgr.C00097 Eucalyptus grandis HOM05D002778 ORTHO05D003112 1.2e-06 56.2 57 38.6
Manes.06G018100 Manihot esculenta HOM05D002778 ORTHO05D003112 1.2e-06 56.2 56 44.6
Zm00001eb181190 Zea mays HOM05D002778 ORTHO05D003112 1.2e-06 56.2 58 41.4
Zm00001eb389240 Zea mays HOM05D002778 ORTHO05D003112 1.2e-06 56.2 53 43.4
AL7G22340 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 2.0e-06 55.5 61 44.3
CANSAT78G1832 Cannabis sativa HOM05D002778 ORTHO05D003112 2.0e-06 55.5 58 39.7
DCAR_018017 Daucus carota HOM05D002778 ORTHO05D003112 2.0e-06 55.5 62 40.3
Glyma.04G075800 Glycine max HOM05D002778 ORTHO05D003112 2.0e-06 55.5 53 39.6
QL02p047015 Quercus lobata HOM05D002778 ORTHO05D003112 2.0e-06 55.5 58 41.4
ATR0580G016 Amborella trichopoda HOM05D002778 ORTHO05D003112 2.6e-06 55.1 58 37.9
AL8G33050 Arabidopsis lyrata HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
BcaB08g36001 Brassica carinata HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
BcaC04g20009 Brassica carinata HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
A10p14450 Brassica napus HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
C09p48860 Brassica napus HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
BolC9t57733H Brassica oleracea HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
Carub.0008s1763 Capsella rubella HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
CARHR270900 Cardamine hirsuta HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
Thhalv10015218m.g Eutrema salsugineum HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 42.9
Lsat_1_v5_gn_4_26460 Lactuca sativa HOM05D002778 ORTHO05D003112 2.6e-06 55.1 48 45.8
Peaxi162Scf00046g00230 Petunia axillaris HOM05D002778 ORTHO05D003112 2.6e-06 55.1 53 43.4
Peaxi162Scf00046g00231 Petunia axillaris HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 39.3
Sopen07g004320 Solanum pennellii HOM05D002778 ORTHO05D003112 2.6e-06 55.1 58 39.7
THA.LOC104813502 Tarenaya hassleriana HOM05D002778 ORTHO05D003112 2.6e-06 55.1 56 41.1
TPR.G5370 Trifolium pratense HOM05D002778 ORTHO05D003112 2.6e-06 55.1 63 34.9
AT5G57123 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
BcaB01g04445 Brassica carinata HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
BcaC01g06467 Brassica carinata HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
BcaC01g06468 Brassica carinata HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
BcaNung05127 Brassica carinata HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
A03p12970 Brassica napus HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
C03p15140 Brassica napus HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
BraA03t10605Z Brassica rapa HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 42.9
CANSAT35G1850 Cannabis sativa HOM05D002778 ORTHO05D003112 3.4e-06 54.7 63 38.1
Cfa013463 Carpinus fangiana HOM05D002778 ORTHO05D003112 3.4e-06 54.7 58 39.7
PSO063G0977 Papaver somniferum HOM05D002778 ORTHO05D003112 3.4e-06 54.7 53 43.4
Thecc.09G191000 Theobroma cacao HOM05D002778 ORTHO05D003112 3.4e-06 54.7 56 41.1
AT5G10695 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 4.4e-06 54.3 58 43.1
BcaB03g12624 Brassica carinata HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 43.4
BcaC01g01200 Brassica carinata HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 43.4
C03p89030 Brassica napus HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 43.4
BolC3t21213H Brassica oleracea HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 43.4
CiPaw.07G198400 Carya illinoinensis HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 41.5
Haze_22042 Corylus avellana HOM05D002778 ORTHO05D003112 4.4e-06 54.3 58 39.7
MELO3C003964.2 Cucumis melo HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 47.2
Lalb_Chr07g0180721 Lupinus albus HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 45.3
Lalb_Chr12g0199661 Lupinus albus HOM05D002778 ORTHO05D003112 4.4e-06 54.3 53 43.4
BraA10t43536Z Brassica rapa HOM05D002778 ORTHO05D003112 5.8e-06 53.9 55 41.8
CARHR237810 Cardamine hirsuta HOM05D002778 ORTHO05D003112 5.8e-06 53.9 48 47.9
AT4G29905 Arabidopsis thaliana HOM05D002778 ORTHO05D003112 7.6e-06 53.5 61 42.6
BcaC09g51768 Brassica carinata HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
BcaC09g52196 Brassica carinata HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
BcaNung00501 Brassica carinata HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
A01p08270 Brassica napus HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
C01p09290 Brassica napus HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
C07p57350 Brassica napus HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
BolC1t00918H Brassica oleracea HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
BolC7t46204H Brassica oleracea HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
BraA01t00772Z Brassica rapa HOM05D002778 ORTHO05D003112 7.6e-06 53.5 48 47.9
Carub.0006s0916 Capsella rubella HOM05D002778 ORTHO05D003112 7.6e-06 53.5 58 43.1
A03p59330 Brassica napus HOM05D002778 ORTHO05D003112 9.9e-06 53.1 48 47.9
BolC3t13955H Brassica oleracea HOM05D002778 ORTHO05D003112 9.9e-06 53.1 56 42.9
BraA03t14990Z Brassica rapa HOM05D002778 ORTHO05D003112 9.9e-06 53.1 48 47.9
CARHR202640 Cardamine hirsuta HOM05D002778 ORTHO05D003112 9.9e-06 53.1 58 43.1
ClCG11G011590 Citrullus lanatus HOM05D002778 ORTHO05D003112 9.9e-06 53.1 54 46.3
Migut.J00787 Erythranthe guttata HOM05D002778 ORTHO05D003112 9.9e-06 53.1 53 41.5
Nn6g33479 Nelumbo nucifera HOM05D002778 ORTHO05D003112 9.9e-06 53.1 58 37.9
Nn6g33480 Nelumbo nucifera HOM05D002778 ORTHO05D003112 9.9e-06 53.1 58 37.9
Os04g0606200 Oryza sativa ssp. japonica HOM05D002778 ORTHO05D003112 9.9e-06 53.1 53 41.5
Sp7g27720 Schrenkiella parvula HOM05D002778 ORTHO05D003112 9.9e-06 53.1 48 47.9


User provided reference genes

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