Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001637 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 1.3e-157 559.7 282 100.0
Dinv13990 Davidia involucrata HOM05D003961 ORTHO05D004528 1.4e-119 433.3 273 78.4
Dinv44530 Davidia involucrata HOM05D003961 ORTHO05D004528 9.4e-116 420.6 273 76.6
Cc03_g03700 Coffea canephora HOM05D003961 ORTHO05D004528 3.6e-115 418.7 273 76.9
Actinidia23507 Actinidia chinensis HOM05D003961 ORTHO05D004528 7.9e-115 417.5 273 78.4
Lj6A609T80 Lonicera japonica HOM05D003961 ORTHO05D004528 1.0e-114 417.2 271 76.8
Cfa015636 Carpinus fangiana HOM05D003961 ORTHO05D004528 1.2e-110 403.7 277 72.9
GSVIVG01017963001 Vitis vinifera HOM05D003961 ORTHO05D004528 3.4e-110 402.1 278 74.1
Potri.010G088300 Populus trichocarpa HOM05D003961 ORTHO05D004528 4.5e-110 401.7 277 73.6
Actinidia08494 Actinidia chinensis HOM05D003961 ORTHO05D004528 1.0e-109 400.6 274 75.2
CiPaw.01G165200 Carya illinoinensis HOM05D003961 ORTHO05D004528 1.0e-109 400.6 280 73.6
QL06p002667 Quercus lobata HOM05D003961 ORTHO05D004528 1.7e-109 399.8 277 72.9
Manes.15G028400 Manihot esculenta HOM05D003961 ORTHO05D004528 2.9e-109 399.1 277 71.5
Sabra10G0054500 Salix brachista HOM05D003961 ORTHO05D004528 5.0e-109 398.3 277 72.9
Ciclev10005024m.g Citrus clementina HOM05D003961 ORTHO05D004528 6.5e-109 397.9 280 71.8
Potri.008G152100 Populus trichocarpa HOM05D003961 ORTHO05D004528 1.9e-108 396.4 277 72.9
Atru.ctg752_3.90 Acer truncatum HOM05D003961 ORTHO05D004528 4.2e-108 395.2 277 74.7
CiPaw.02G096900 Carya illinoinensis HOM05D003961 ORTHO05D004528 2.7e-107 392.5 279 71.3
Actinidia40151 Actinidia chinensis HOM05D003961 ORTHO05D004528 3.6e-107 392.1 273 74.0
Eucgr.H03517 Eucalyptus grandis HOM05D003961 ORTHO05D004528 3.6e-107 392.1 272 72.4
MSTRG.4028 Avicennia marina HOM05D003961 ORTHO05D004528 1.4e-106 390.2 275 73.5
Oeu023394.1 Olea europaea HOM05D003961 ORTHO05D004528 1.4e-106 390.2 270 74.4
CSS0032523 Camellia sinensis var. sinensis HOM05D003961 ORTHO05D004528 2.3e-106 389.4 273 74.4
TAR365G0124 Trochodendron aralioides HOM05D003961 ORTHO05D004528 1.1e-105 387.1 274 73.0
DCAR_030632 Daucus carota HOM05D003961 ORTHO05D004528 2.6e-105 386.0 276 72.1
Prupe.1G012800 Prunus persica HOM05D003961 ORTHO05D004528 2.6e-105 386.0 283 71.0
Thecc.04G230700 Theobroma cacao HOM05D003961 ORTHO05D004528 2.6e-105 386.0 272 73.5
HanXRQChr10g0296391 Helianthus annuus HOM05D003961 ORTHO05D004528 3.3e-105 385.6 272 68.8
TAR362G0627 Trochodendron aralioides HOM05D003961 ORTHO05D004528 3.3e-105 385.6 278 70.9
Nn1g02291 Nelumbo nucifera HOM05D003961 ORTHO05D004528 4.4e-105 385.2 280 71.8
Peaxi162Scf00092g01211 Petunia axillaris HOM05D003961 ORTHO05D004528 4.4e-105 385.2 273 70.7
Oeu050277.1 Olea europaea HOM05D003961 ORTHO05D004528 9.7e-105 384.0 270 73.0
Sabra08G0115900 Salix brachista HOM05D003961 ORTHO05D004528 9.7e-105 384.0 277 70.4
COL.COLO4_05309 Corchorus olitorius HOM05D003961 ORTHO05D004528 1.3e-104 383.6 275 73.1
Gohir.A02G031600 Gossypium hirsutum HOM05D003961 ORTHO05D004528 1.7e-104 383.3 274 72.6
Gohir.D02G038300 Gossypium hirsutum HOM05D003961 ORTHO05D004528 2.8e-104 382.5 274 73.0
FvH4_4g15420 Fragaria vesca HOM05D003961 ORTHO05D004528 3.7e-104 382.1 282 70.2
MSTRG.9986 Avicennia marina HOM05D003961 ORTHO05D004528 4.8e-104 381.7 272 72.8
Duzib052G0053 Durio zibethinus HOM05D003961 ORTHO05D004528 4.8e-104 381.7 272 72.4
Lsat_1_v5_gn_5_148741 Lactuca sativa HOM05D003961 ORTHO05D004528 4.8e-104 381.7 272 69.5
Gorai.005G042200 Gossypium raimondii HOM05D003961 ORTHO05D004528 6.3e-104 381.3 274 72.6
PGR004G2370 Punica granatum HOM05D003961 ORTHO05D004528 1.4e-103 380.2 278 71.6
CAN.G907.4 Capsicum annuum HOM05D003961 ORTHO05D004528 1.8e-103 379.8 278 70.5
HanXRQChr04g0109101 Helianthus annuus HOM05D003961 ORTHO05D004528 1.8e-103 379.8 272 69.1
FAN12G2300 Fragaria x ananassa HOM05D003961 ORTHO05D004528 3.1e-103 379.0 282 69.9
FAN22G1591 Fragaria x ananassa HOM05D003961 ORTHO05D004528 4.1e-103 378.6 282 69.5
FAN17G1073 Fragaria x ananassa HOM05D003961 ORTHO05D004528 7.0e-103 377.9 282 69.5
FAN07G0246 Fragaria x ananassa HOM05D003961 ORTHO05D004528 1.2e-102 377.1 282 69.9
Oeu031235.1 Olea europaea HOM05D003961 ORTHO05D004528 2.6e-102 375.9 270 70.4
Rhsim02G0023600 Rhododendron simsii HOM05D003961 ORTHO05D004528 1.3e-101 373.6 278 72.3
MD13G1192100 Malus domestica HOM05D003961 ORTHO05D004528 1.7e-101 373.2 282 68.8
CANSAT78G1057 Cannabis sativa HOM05D003961 ORTHO05D004528 1.1e-100 370.5 287 67.6
SalBow2G1240 Salvia bowleyana HOM05D003961 ORTHO05D004528 3.2e-100 369.0 282 70.2
Manes.03G179600 Manihot esculenta HOM05D003961 ORTHO05D004528 7.2e-100 367.9 275 70.5
TWI73G0616 Tripterygium wilfordii HOM05D003961 ORTHO05D004528 9.4e-100 367.5 275 67.6
Cpa.g.sc58.116 Carica papaya HOM05D003961 ORTHO05D004528 1.2e-99 367.1 275 71.6
DCAR_002388 Daucus carota HOM05D003961 ORTHO05D004528 4.7e-99 365.2 276 68.5
PSO832G1325 Papaver somniferum HOM05D003961 ORTHO05D004528 8.0e-99 364.4 282 67.0
RcHm_v2.0_Chr4g0416361 Rosa chinensis HOM05D003961 ORTHO05D004528 1.4e-98 363.6 288 66.0
Nitab4.5_0000043g0220 Nicotiana tabacum HOM05D003961 ORTHO05D004528 8.8e-98 360.9 273 69.2
PGSC0003DMG400030080 Solanum tuberosum HOM05D003961 ORTHO05D004528 1.1e-97 360.5 279 68.8
Duzib212G0915 Durio zibethinus HOM05D003961 ORTHO05D004528 2.0e-97 359.8 273 70.0
Solyc09g075970.3 Solanum lycopersicum HOM05D003961 ORTHO05D004528 2.0e-97 359.8 279 68.5
PSO210G4025 Papaver somniferum HOM05D003961 ORTHO05D004528 7.4e-97 357.8 283 66.4
Sopen09g030800 Solanum pennellii HOM05D003961 ORTHO05D004528 1.3e-96 357.1 278 68.3
Duzib151G0309 Durio zibethinus HOM05D003961 ORTHO05D004528 1.7e-96 356.7 272 69.1
TAR633G2096 Trochodendron aralioides HOM05D003961 ORTHO05D004528 2.2e-96 356.3 280 66.8
Aqoxy5G00479 Aquilegia oxysepala HOM05D003961 ORTHO05D004528 2.8e-96 355.9 282 67.4
MELO3C006535.2 Cucumis melo HOM05D003961 ORTHO05D004528 1.1e-95 354.0 284 64.4
Phvul.007G056700 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 2.4e-95 352.8 272 69.5
arahy.Tifrunner.gnm1.ann1.K10YKQ Arachis hypogaea HOM05D003961 ORTHO05D004528 5.3e-95 351.7 274 67.2
VMungo0720G2903 Vigna mungo HOM05D003961 ORTHO05D004528 5.3e-95 351.7 272 68.8
arahy.Tifrunner.gnm1.ann1.X5EF0Z Arachis hypogaea HOM05D003961 ORTHO05D004528 7.0e-95 351.3 274 67.2
CsaV3_3G013370 Cucumis sativus L. HOM05D003961 ORTHO05D004528 7.0e-95 351.3 284 64.1
Sed0004334 Sechium edule HOM05D003961 ORTHO05D004528 2.6e-94 349.4 280 63.9
Migut.G00334 Erythranthe guttata HOM05D003961 ORTHO05D004528 3.5e-94 349.0 285 68.4
Peaxi162Scf00642g00006 Petunia axillaris HOM05D003961 ORTHO05D004528 4.5e-94 348.6 272 66.9
Glyma.20G145500 Glycine max HOM05D003961 ORTHO05D004528 1.0e-93 347.4 272 68.0
Haze_00908 Corylus avellana HOM05D003961 ORTHO05D004528 1.7e-93 346.7 246 70.7
Glyma.10G248600 Glycine max HOM05D003961 ORTHO05D004528 2.2e-93 346.3 272 67.6
arahy.Tifrunner.gnm1.ann1.6SSG9H Arachis hypogaea HOM05D003961 ORTHO05D004528 1.1e-92 344.0 279 64.9
Sed0007259 Sechium edule HOM05D003961 ORTHO05D004528 1.5e-92 343.6 283 62.9
Nn4g26303 Nelumbo nucifera HOM05D003961 ORTHO05D004528 4.2e-92 342.0 282 64.2
arahy.Tifrunner.gnm1.ann1.KTSS0P Arachis hypogaea HOM05D003961 ORTHO05D004528 5.5e-92 341.7 276 65.2
Ca_10910_v3 Cicer arietinum L. HOM05D003961 ORTHO05D004528 1.2e-91 340.5 273 66.7
Lj5g0020823 Lotus japonicus HOM05D003961 ORTHO05D004528 4.7e-91 338.6 272 67.6
Psat6g208040 Pisum sativum HOM05D003961 ORTHO05D004528 6.8e-90 334.7 273 65.9
Aa31LG1G19250 Aethionema arabicum HOM05D003961 ORTHO05D004528 7.5e-89 331.3 276 64.9
Thhalv10007749m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 1.7e-88 330.1 276 64.5
BolC8t52703H Brassica oleracea HOM05D003961 ORTHO05D004528 1.4e-87 327.0 275 64.4
Nitab4.5_0004283g0010 Nicotiana tabacum HOM05D003961 ORTHO05D004528 1.8e-87 326.6 272 64.0
MBI04_g20819_MAGBIO Magnolia biondii HOM05D003961 ORTHO05D004528 1.2e-86 323.9 276 64.9
Sp1g04240 Schrenkiella parvula HOM05D003961 ORTHO05D004528 2.0e-86 323.2 275 63.6
CARHR004880 Cardamine hirsuta HOM05D003961 ORTHO05D004528 2.7e-86 322.8 275 63.6
THA.LOC104826163 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 3.5e-86 322.4 277 63.9
BolC5t29146H Brassica oleracea HOM05D003961 ORTHO05D004528 7.7e-86 321.2 276 63.0
BcaC07g42133 Brassica carinata HOM05D003961 ORTHO05D004528 1.0e-85 320.9 277 63.9
C08p51740 Brassica napus HOM05D003961 ORTHO05D004528 1.0e-85 320.9 277 63.9
C05p03710 Brassica napus HOM05D003961 ORTHO05D004528 1.7e-85 320.1 276 63.0
EL10Ac3g06424 Beta vulgaris HOM05D003961 ORTHO05D004528 3.8e-85 318.9 294 61.2
AL1G15190 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 5.0e-85 318.5 275 63.3
A10p04070 Brassica napus HOM05D003961 ORTHO05D004528 5.0e-85 318.5 276 62.0
BraA10t42678Z Brassica rapa HOM05D003961 ORTHO05D004528 5.0e-85 318.5 276 62.0
Sc13g0004340 Simmondsia chinensis HOM05D003961 ORTHO05D004528 5.0e-85 318.5 300 57.7
A09p67460 Brassica napus HOM05D003961 ORTHO05D004528 8.5e-85 317.8 274 64.2
BraA09t42074Z Brassica rapa HOM05D003961 ORTHO05D004528 8.5e-85 317.8 274 64.2
Lalb_Chr05g0210961 Lupinus albus HOM05D003961 ORTHO05D004528 1.5e-84 317.0 272 63.2
AT1G05370 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 1.9e-84 316.6 275 62.5
SGA_v2.0_scaffold39G15244 Striga asiatica HOM05D003961 ORTHO05D004528 5.5e-84 315.1 296 61.5
AUR62033612 Chenopodium quinoa HOM05D003961 ORTHO05D004528 4.7e-83 312.0 297 60.9
THA.LOC104801547 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 8.0e-83 311.2 275 63.3
Carub.0001s0471 Capsella rubella HOM05D003961 ORTHO05D004528 1.8e-82 310.1 276 62.0
Nitab4.5_0000321g0090 Nicotiana tabacum HOM05D003961 ORTHO05D004528 3.0e-82 309.3 271 62.7
Medtr1g104540 Medicago truncatula HOM05D003961 ORTHO05D004528 5.2e-82 308.5 275 61.8
Atru.chr4.2476 Acer truncatum HOM05D003961 ORTHO05D004528 1.4e-79 300.4 280 62.1
THA.LOC104808538 Tarenaya hassleriana HOM05D003961 ORTHO05D004528 1.0e-77 294.3 278 56.8
Hund12136 Selenicereus undatus HOM05D003961 ORTHO05D004528 2.8e-75 286.2 286 56.3
Rhsim04G0203000 Rhododendron simsii HOM05D003961 ORTHO05D004528 3.6e-75 285.8 239 69.0
AT3G22410 Arabidopsis thaliana HOM05D003961 ORTHO05D004528 3.4e-73 279.3 278 56.5
Carub.0003s2257 Capsella rubella HOM05D003961 ORTHO05D004528 4.4e-73 278.9 297 54.5
A05p26360 Brassica napus HOM05D003961 ORTHO05D004528 1.7e-72 276.9 275 56.0
BraA05t21511Z Brassica rapa HOM05D003961 ORTHO05D004528 1.7e-72 276.9 275 56.0
SalBow2G2398 Salvia bowleyana HOM05D003961 ORTHO05D004528 6.4e-72 275.0 287 54.7
CARHR098300 Cardamine hirsuta HOM05D003961 ORTHO05D004528 8.3e-72 274.6 277 55.6
Thhalv10020858m.g Eutrema salsugineum HOM05D003961 ORTHO05D004528 1.4e-71 273.9 273 56.8
AL3G36680 Arabidopsis lyrata HOM05D003961 ORTHO05D004528 7.0e-71 271.6 278 56.1
BcaC05g28076 Brassica carinata HOM05D003961 ORTHO05D004528 7.0e-71 271.6 275 55.3
C05p40990 Brassica napus HOM05D003961 ORTHO05D004528 7.0e-71 271.6 275 55.3
BolC5t32840H Brassica oleracea HOM05D003961 ORTHO05D004528 7.0e-71 271.6 275 55.3
MD16G1192700 Malus domestica HOM05D003961 ORTHO05D004528 2.0e-70 270.0 216 66.7
BcaB06g26342 Brassica carinata HOM05D003961 ORTHO05D004528 3.3e-68 262.7 275 53.8
HPP92_007926 Vanilla planifolia HOM05D003961 ORTHO05D004528 8.0e-67 258.1 281 53.4
Os03g0219100 Oryza sativa ssp. japonica HOM05D003961 ORTHO05D004528 1.0e-66 257.7 273 56.4
Sp3g20170 Schrenkiella parvula HOM05D003961 ORTHO05D004528 2.3e-66 256.5 282 53.5
unitig_748.g8337 Utricularia gibba HOM05D003961 ORTHO05D004528 7.5e-65 251.5 272 51.8
unitig_748.g8543 Utricularia gibba HOM05D003961 ORTHO05D004528 9.8e-65 251.1 270 52.6
Zm00001eb008830 Zea mays HOM05D003961 ORTHO05D004528 1.3e-64 250.8 271 53.5
BcaB04g20519 Brassica carinata HOM05D003961 ORTHO05D004528 1.1e-63 247.7 268 53.7
A01p32690 Brassica napus HOM05D003961 ORTHO05D004528 1.1e-63 247.7 282 51.8
BraA01t03397Z Brassica rapa HOM05D003961 ORTHO05D004528 1.4e-63 247.3 282 51.8
C01p41880 Brassica napus HOM05D003961 ORTHO05D004528 2.4e-63 246.5 285 52.6
BcaC09g49172 Brassica carinata HOM05D003961 ORTHO05D004528 1.3e-61 240.7 285 51.9
BolC1t04141H Brassica oleracea HOM05D003961 ORTHO05D004528 1.3e-61 240.7 285 51.9
Zm00001eb400000 Zea mays HOM05D003961 ORTHO05D004528 1.7e-61 240.4 282 52.1
TPR.G5481 Trifolium pratense HOM05D003961 ORTHO05D004528 2.3e-61 240.0 274 52.9
Aa31LG8G8940 Aethionema arabicum HOM05D003961 ORTHO05D004528 2.5e-60 236.5 279 48.7
ClCG05G005190 Citrullus lanatus HOM05D003961 ORTHO05D004528 9.5e-60 234.6 282 48.2
Ah.13g073820 Amaranthus hybridus HOM05D003961 ORTHO05D004528 2.1e-59 233.4 291 50.9
SHI00429 Sapria himalayana HOM05D003961 ORTHO05D004528 9.2e-55 218.0 237 53.2
Sc19g0004200 Simmondsia chinensis HOM05D003961 ORTHO05D004528 1.2e-54 217.6 289 47.1
ATR0737G092 Amborella trichopoda HOM05D003961 ORTHO05D004528 3.9e-53 212.6 276 49.6
CDE10G1225 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 2.4e-47 193.4 263 45.2
Ah.04g154530 Amaranthus hybridus HOM05D003961 ORTHO05D004528 6.0e-46 188.7 269 48.0
Phvul.002G046000 Phaseolus vulgaris HOM05D003961 ORTHO05D004528 1.1e-44 184.5 277 44.0
VMungo1215G0448 Vigna mungo HOM05D003961 ORTHO05D004528 8.4e-40 168.3 251 44.2
Migut.N00179 Erythranthe guttata HOM05D003961 ORTHO05D004528 6.6e-37 158.7 175 56.0
unitig_41.g31645 Utricularia gibba HOM05D003961 ORTHO05D004528 2.5e-36 156.8 243 43.6
Hma1.2p1_0745F.1_g211900 Hydrangea macrophylla HOM05D003961 ORTHO05D004528 2.4e-31 140.2 88 78.4
ECA234G0180 Erigeron canadensis HOM05D003961 ORTHO05D004528 1.9e-28 130.6 95 65.3
SalBow3G0892 Salvia bowleyana HOM05D003961 ORTHO05D004528 2.7e-22 110.2 80 65.0
CDE10G0336 Ceratophyllum demersum HOM05D003961 ORTHO05D004528 4.3e-20 102.8 152 44.1
Pp3c6_16090 Physcomitrium patens HOM05D003961 ORTHO05D004528 2.8e-19 100.1 279 29.0
Pp3c16_18230 Physcomitrium patens HOM05D003961 ORTHO05D004528 3.7e-19 99.8 274 29.9
Pp3c25_7490 Physcomitrium patens HOM05D003961 ORTHO05D004528 4.9e-16 89.4 283 27.9
Pp3c1_24930 Physcomitrium patens HOM05D003961 ORTHO05D004528 2.5e-15 87.0 316 24.7
SMO347G0581 Selaginella moellendorffii HOM05D003961 ORTHO05D004528 3.2e-15 86.7 275 25.5
Actinidia36962 Actinidia chinensis HOM05D003961 ORTHO05D004528 3.3e-12 76.6 41 82.9
Mapoly0016s0069 Marchantia polymorpha HOM05D003961 ORTHO05D004528 4.3e-12 76.3 256 26.2
Actinidia36963 Actinidia chinensis HOM05D003961 ORTHO05D055364 2.8e-11 73.6 39 87.2
TAR633G0076 Trochodendron aralioides HOM05D000441 ORTHO05D414409 1.4e-10 71.2 44 68.2


User provided reference genes

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