Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001630 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D010295 4.6e-25 117.1 58 100.0
Actinidia12583 Actinidia chinensis HOM05D008148 ORTHO05D010295 2.3e-13 78.2 70 60.0
GSVIVG01014187001 Vitis vinifera HOM05D008148 ORTHO05D010295 4.0e-13 77.4 50 70.0
Prupe.4G163600 Prunus persica HOM05D008148 ORTHO05D010295 1.7e-11 72.0 61 63.9
RcHm_v2.0_Chr5g0030781 Rosa chinensis HOM05D008148 ORTHO05D010295 1.7e-11 72.0 62 59.7
Eucgr.F03276 Eucalyptus grandis HOM05D008148 ORTHO05D010295 2.2e-11 71.6 51 66.7
Prupe.4G164100 Prunus persica HOM05D008148 ORTHO05D010295 2.2e-11 71.6 46 76.1
FAN11G2091 Fragaria x ananassa HOM05D008148 ORTHO05D010295 2.9e-11 71.2 62 61.3
MD11G1264400 Malus domestica HOM05D008148 ORTHO05D010295 2.9e-11 71.2 63 58.7
Manes.15G095500 Manihot esculenta HOM05D008148 ORTHO05D010295 2.9e-11 71.2 47 68.1
CiPaw.11G159800 Carya illinoinensis HOM05D008148 ORTHO05D010295 4.9e-11 70.5 65 61.5
Sc03g0010550 Simmondsia chinensis HOM05D008148 ORTHO05D010295 8.3e-11 69.7 49 71.4
Cpa.g.sc77.20 Carica papaya HOM05D008148 ORTHO05D010295 1.1e-10 69.3 46 69.6
Thecc.07G117800 Theobroma cacao HOM05D008148 ORTHO05D010295 1.9e-10 68.6 55 60.0
CsaV3_4G032950 Cucumis sativus L. HOM05D008148 ORTHO05D010295 4.1e-10 67.4 69 53.6
Duzib213G0597 Durio zibethinus HOM05D008148 ORTHO05D010295 7.1e-10 66.6 45 66.7
Potri.011G109100 Populus trichocarpa HOM05D008148 ORTHO05D010295 7.1e-10 66.6 42 69.0
PGR031G2401 Punica granatum HOM05D008148 ORTHO05D010295 7.1e-10 66.6 44 68.2
Atru.chr2.2119 Acer truncatum HOM05D008148 ORTHO05D010295 9.2e-10 66.2 61 55.7
FAN21G2680 Fragaria x ananassa HOM05D008148 ORTHO05D010295 9.2e-10 66.2 62 56.5
Sed0019666 Sechium edule HOM05D008148 ORTHO05D010295 1.2e-09 65.9 69 49.3
Cc05_g11020 Coffea canephora HOM05D008148 ORTHO05D010295 1.6e-09 65.5 64 59.4
ClCG11G017320 Citrullus lanatus HOM05D008148 ORTHO05D010295 2.1e-09 65.1 69 50.7
Oeu059259.1 Olea europaea HOM05D008148 ORTHO05D010295 2.1e-09 65.1 64 56.2
THA.LOC104812318 Tarenaya hassleriana HOM05D008148 ORTHO05D010295 2.1e-09 65.1 49 61.2
TPR.G16053 Trifolium pratense HOM05D008148 ORTHO05D010295 2.1e-09 65.1 58 55.2
COL.COLO4_17536 Corchorus olitorius HOM05D008148 ORTHO05D010295 2.7e-09 64.7 55 58.2
Sabra11G0096700 Salix brachista HOM05D008148 ORTHO05D010295 2.7e-09 64.7 42 66.7
MELO3C025654.2 Cucumis melo HOM05D008148 ORTHO05D010295 3.5e-09 64.3 69 52.2
arahy.Tifrunner.gnm1.ann1.MJJR0W Arachis hypogaea HOM05D008148 ORTHO05D010295 4.6e-09 63.9 50 68.0
CARHR017420 Cardamine hirsuta HOM05D008148 ORTHO05D010295 4.6e-09 63.9 47 55.3
arahy.Tifrunner.gnm1.ann1.GBF3HF Arachis hypogaea HOM05D008148 ORTHO05D010295 6.0e-09 63.5 49 63.3
BraA09t41440Z Brassica rapa HOM05D008148 ORTHO05D010295 6.0e-09 63.5 43 58.1
Sp1g15050 Schrenkiella parvula HOM05D008148 ORTHO05D010295 6.0e-09 63.5 47 53.2
BcaC07g41389 Brassica carinata HOM05D008148 ORTHO05D010295 1.7e-08 62.0 47 53.2
Gohir.A01G053800 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.7e-08 62.0 46 60.9
Gohir.D01G042712 Gossypium hirsutum HOM05D008148 ORTHO05D010295 1.7e-08 62.0 46 60.9
Gorai.002G054100 Gossypium raimondii HOM05D008148 ORTHO05D010295 1.7e-08 62.0 46 60.9
Carub.0001s1665 Capsella rubella HOM05D008148 ORTHO05D010295 2.3e-08 61.6 67 41.8
Thhalv10009282m.g Eutrema salsugineum HOM05D008148 ORTHO05D010295 2.3e-08 61.6 47 53.2
DCAR_013159 Daucus carota HOM05D008148 ORTHO05D010295 3.0e-08 61.2 53 58.5
Psat5g237240 Pisum sativum HOM05D008148 ORTHO05D010295 3.0e-08 61.2 73 47.9
A09p60700 Brassica napus HOM05D008148 ORTHO05D010295 3.9e-08 60.8 43 55.8
SalBow6G6640 Salvia bowleyana HOM05D008148 ORTHO05D010295 3.9e-08 60.8 57 52.6
SalBow7G3203 Salvia bowleyana HOM05D008148 ORTHO05D010295 3.9e-08 60.8 57 52.6
AT1G16916 Arabidopsis thaliana HOM05D008148 ORTHO05D010295 5.1e-08 60.5 48 52.1
AL1G29090 Arabidopsis lyrata HOM05D008148 ORTHO05D010295 8.6e-08 59.7 41 56.1
C08p44200 Brassica napus HOM05D008148 ORTHO05D010295 8.6e-08 59.7 43 53.5
Ca_03959_v3 Cicer arietinum L. HOM05D008148 ORTHO05D010295 8.6e-08 59.7 70 48.6
FAN25G0037 Fragaria x ananassa HOM05D008148 ORTHO05D010295 8.6e-08 59.7 65 53.8
Medtr2g076020 Medicago truncatula HOM05D008148 ORTHO05D010295 1.5e-07 58.9 48 58.3
Migut.M00719 Erythranthe guttata HOM05D008148 ORTHO05D010295 1.9e-07 58.5 46 60.9
Lalb_Chr25g0285821 Lupinus albus HOM05D008148 ORTHO05D010295 1.9e-07 58.5 48 56.2
Lj3g0020996 Lotus japonicus HOM05D008148 ORTHO05D010295 1.6e-06 55.5 46 56.5
Nn1g04456 Nelumbo nucifera HOM05D008148 ORTHO05D010295 1.6e-06 55.5 46 60.9
CSS0005736 Camellia sinensis var. sinensis HOM05D008148 ORTHO05D109382 6.2e-06 53.5 26 96.2
Glyma.13G269300 Glycine max HOM05D008148 ORTHO05D010295 6.2e-06 53.5 58 48.3
Aqoxy4G00298 Aquilegia oxysepala HOM05D037719 ORTHO05D031273 8.1e-06 53.1 40 67.5
SGA_v2.0_scaffold34G13787 Striga asiatica HOM05D008148 ORTHO05D010295 8.1e-06 53.1 46 56.5


User provided reference genes

Program Settings