Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001625 Camellia sinensis var. sinensis HOM05D004493 ORTHO05D005117 7.9e-85 317.0 153 100.0
Actinidia00919 Actinidia chinensis HOM05D004493 ORTHO05D005117 2.3e-39 166.0 93 81.7
Dinv06245 Davidia involucrata HOM05D004493 ORTHO05D005117 2.5e-38 162.5 94 78.7
Dinv15519 Davidia involucrata HOM05D004493 ORTHO05D005117 2.5e-38 162.5 94 78.7
Cfa009530 Carpinus fangiana HOM05D004493 ORTHO05D005117 8.0e-37 157.5 93 76.3
Haze_22920 Corylus avellana HOM05D004493 ORTHO05D005117 1.0e-36 157.1 93 76.3
GSVIVG01025508001 Vitis vinifera HOM05D004493 ORTHO05D005117 1.0e-36 157.1 94 73.4
Ciclev10014017m.g Citrus clementina HOM05D004493 ORTHO05D005117 1.5e-35 153.3 94 73.4
Atru.chr3.2057 Acer truncatum HOM05D004493 ORTHO05D005117 3.7e-34 148.7 94 72.3
QL01p007857 Quercus lobata HOM05D004493 ORTHO05D005117 4.1e-33 145.2 93 73.1
Gorai.004G097900 Gossypium raimondii HOM05D004493 ORTHO05D005117 5.4e-33 144.8 94 70.2
Rhsim10G0100200 Rhododendron simsii HOM05D004493 ORTHO05D005117 1.2e-32 143.7 93 72.0
Gohir.D08G092400 Gossypium hirsutum HOM05D004493 ORTHO05D005117 2.0e-32 142.9 94 69.1
Rhsim13G0209100 Rhododendron simsii HOM05D004493 ORTHO05D005117 2.0e-32 142.9 91 73.6
TAR623G0338 Trochodendron aralioides HOM05D004493 ORTHO05D005117 5.9e-32 141.4 94 68.1
CiPaw.13G180100 Carya illinoinensis HOM05D004493 ORTHO05D005117 2.3e-31 139.4 93 69.9
Nn7g36938 Nelumbo nucifera HOM05D004493 ORTHO05D005117 2.3e-31 139.4 94 67.0
TWI34G1214 Tripterygium wilfordii HOM05D004493 ORTHO05D005117 2.3e-31 139.4 94 64.9
Thecc.09G205800 Theobroma cacao HOM05D004493 ORTHO05D005117 3.9e-31 138.7 94 64.9
Potri.003G223400 Populus trichocarpa HOM05D004493 ORTHO05D005117 5.0e-31 138.3 94 64.9
Sabra03G0166000 Salix brachista HOM05D004493 ORTHO05D005117 5.0e-31 138.3 94 64.9
QL01p007875 Quercus lobata HOM05D004493 ORTHO05D005117 1.1e-30 137.1 93 68.8
Duzib168G1306 Durio zibethinus HOM05D004493 ORTHO05D005117 1.5e-30 136.7 91 70.3
Manes.15G110800 Manihot esculenta HOM05D004493 ORTHO05D005117 3.3e-30 135.6 91 65.9
CANSAT11G1563 Cannabis sativa HOM05D004493 ORTHO05D005117 5.6e-30 134.8 93 65.6
Prupe.6G001200 Prunus persica HOM05D004493 ORTHO05D005117 1.2e-29 133.7 93 68.8
RcHm_v2.0_Chr5g0084071 Rosa chinensis HOM05D004493 ORTHO05D005117 6.2e-29 131.3 88 70.5
SGA_v2.0_scaffold6G03332 Striga asiatica HOM05D004493 ORTHO05D005117 8.0e-29 131.0 95 63.2
arahy.Tifrunner.gnm1.ann1.578M4A Arachis hypogaea HOM05D004493 ORTHO05D005117 1.8e-28 129.8 89 62.9
arahy.Tifrunner.gnm1.ann1.M9LRNQ Arachis hypogaea HOM05D004493 ORTHO05D005117 1.8e-28 129.8 89 62.9
CARHR045230 Cardamine hirsuta HOM05D004493 ORTHO05D005117 2.3e-28 129.4 94 64.9
FvH4_3g45960 Fragaria vesca HOM05D004493 ORTHO05D005117 4.0e-28 128.6 88 69.3
FAN11G0901 Fragaria x ananassa HOM05D004493 ORTHO05D005117 4.0e-28 128.6 88 69.3
BcaC01g01535 Brassica carinata HOM05D004493 ORTHO05D005117 5.2e-28 128.3 94 64.9
C03p92870 Brassica napus HOM05D004493 ORTHO05D005117 5.2e-28 128.3 94 64.9
BolC3t21593H Brassica oleracea HOM05D004493 ORTHO05D005117 5.2e-28 128.3 94 64.9
TPR.G22583 Trifolium pratense HOM05D004493 ORTHO05D005117 5.2e-28 128.3 91 61.5
Psat6g065800 Pisum sativum HOM05D004493 ORTHO05D005117 8.9e-28 127.5 91 62.6
AL1G63570 Arabidopsis lyrata HOM05D004493 ORTHO05D005117 1.5e-27 126.7 94 63.8
A08p00540 Brassica napus HOM05D004493 ORTHO05D005117 2.0e-27 126.3 94 63.8
FAN25G0645 Fragaria x ananassa HOM05D004493 ORTHO05D005117 2.0e-27 126.3 88 68.2
BraA08t32112Z Brassica rapa HOM05D004493 ORTHO05D005117 2.6e-27 125.9 94 62.8
AT1G55540 Arabidopsis thaliana HOM05D004493 ORTHO05D005117 3.4e-27 125.6 94 63.8
Medtr1g069005 Medicago truncatula HOM05D004493 ORTHO05D005117 9.8e-27 124.0 91 58.2
Aa31LG10G700 Aethionema arabicum HOM05D004493 ORTHO05D005117 1.7e-26 123.2 103 57.3
Thhalv10011181m.g Eutrema salsugineum HOM05D004493 ORTHO05D005117 3.7e-26 122.1 94 62.8
Sp1g41160 Schrenkiella parvula HOM05D004493 ORTHO05D005117 3.7e-26 122.1 93 62.4
THA.LOC104822690 Tarenaya hassleriana HOM05D004493 ORTHO05D005117 3.7e-26 122.1 94 61.7
Aqoxy1G00107 Aquilegia oxysepala HOM05D004493 ORTHO05D005117 4.9e-26 121.7 94 55.3
Migut.N00529 Erythranthe guttata HOM05D004493 ORTHO05D005117 6.4e-26 121.3 94 57.4
Lj5g0011313 Lotus japonicus HOM05D004493 ORTHO05D005117 1.4e-25 120.2 91 61.5
PSO384G0423 Papaver somniferum HOM05D004493 ORTHO05D005117 1.9e-25 119.8 89 64.0
Peaxi162Scf00186g01612 Petunia axillaris HOM05D004493 ORTHO05D005117 1.9e-25 119.8 91 56.0
MD11G1001000 Malus domestica HOM05D004493 ORTHO05D005117 2.4e-25 119.4 93 62.4
Ca_09617_v3 Cicer arietinum L. HOM05D004493 ORTHO05D005117 5.4e-25 118.2 85 63.5
FAN16G3321 Fragaria x ananassa HOM05D004493 ORTHO05D005117 7.0e-25 117.9 105 57.1
Glyma.06G239100 Glycine max HOM05D004493 ORTHO05D005117 1.2e-24 117.1 91 57.1
Lsat_1_v5_gn_1_71321 Lactuca sativa HOM05D004493 ORTHO05D005117 1.2e-24 117.1 94 58.5
Glyma.18G007300 Glycine max HOM05D004493 ORTHO05D005117 1.6e-24 116.7 91 56.0
Nitab4.5_0000890g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.6e-24 116.7 91 57.1
DCAR_024091 Daucus carota HOM05D004493 ORTHO05D005117 2.7e-24 115.9 118 50.8
MBI04_g11451_MAGBIO Magnolia biondii HOM05D004493 ORTHO05D005117 2.7e-24 115.9 93 59.1
Eucgr.J01744 Eucalyptus grandis HOM05D004493 ORTHO05D005117 3.5e-24 115.5 94 56.4
Phvul.007G078700 Phaseolus vulgaris HOM05D004493 ORTHO05D005117 3.5e-24 115.5 91 54.9
CsaV3_5G029430 Cucumis sativus L. HOM05D004493 ORTHO05D005117 4.6e-24 115.2 94 58.5
Lalb_Chr13g0295751 Lupinus albus HOM05D004493 ORTHO05D005117 4.6e-24 115.2 90 62.2
SalBow3G2955 Salvia bowleyana HOM05D004493 ORTHO05D005117 6.0e-24 114.8 93 54.8
Carub.0001s4405 Capsella rubella HOM05D004493 ORTHO05D005117 7.8e-24 114.4 94 58.5
CAN.G215.14 Capsicum annuum HOM05D004493 ORTHO05D005117 1.0e-23 114.0 94 56.4
Nitab4.5_0000075g0180 Nicotiana tabacum HOM05D004493 ORTHO05D005117 1.0e-23 114.0 80 61.2
ECA248G0177 Erigeron canadensis HOM05D004493 ORTHO05D000562 2.3e-23 112.8 92 57.6
Sed0013310 Sechium edule HOM05D004493 ORTHO05D005117 3.0e-23 112.5 94 58.5
Solyc02g032480.3 Solanum lycopersicum HOM05D004493 ORTHO05D005117 3.9e-23 112.1 90 56.7
Sopen02g010770 Solanum pennellii HOM05D004493 ORTHO05D005117 5.0e-23 111.7 92 55.4
MELO3C011789.2 Cucumis melo HOM05D004493 ORTHO05D005117 6.6e-23 111.3 94 56.4
EL10Ac4g07695 Beta vulgaris HOM05D004493 ORTHO05D005117 9.5e-22 107.5 91 57.1
Oeu023963.1 Olea europaea HOM05D004493 ORTHO05D005117 1.6e-21 106.7 171 37.4
Ah.06g182270 Amaranthus hybridus HOM05D004493 ORTHO05D005117 4.7e-21 105.1 90 56.7
Lj2A889G19 Lonicera japonica HOM05D004493 ORTHO05D005117 1.8e-20 103.2 94 55.3
HPP92_014371 Vanilla planifolia HOM05D004493 ORTHO05D005117 1.8e-20 103.2 93 52.7
AUR62015878 Chenopodium quinoa HOM05D004493 ORTHO05D005117 4.0e-20 102.1 88 58.0
AUR62020345 Chenopodium quinoa HOM05D004493 ORTHO05D005117 6.8e-20 101.3 88 59.1
PGR119G2408 Punica granatum HOM05D004493 ORTHO05D005117 2.0e-19 99.8 85 54.1
ATR0068G024 Amborella trichopoda HOM05D004493 ORTHO05D005117 3.4e-19 99.0 94 50.0
FAN21G4070 Fragaria x ananassa HOM05D004493 ORTHO05D005117 8.6e-15 84.3 88 51.1
Cc01_g00330 Coffea canephora HOM05D004493 ORTHO05D005117 9.5e-14 80.9 92 45.7
Zm00001eb331030 Zea mays HOM05D004493 ORTHO05D005117 2.3e-12 76.3 87 47.1
ClCG11G012960 Citrullus lanatus HOM05D004493 ORTHO05D005117 3.8e-10 68.9 45 66.7
Eucgr.J01742 Eucalyptus grandis HOM05D004493 ORTHO05D005117 5.4e-09 65.1 118 33.9
Mapoly0022s0121 Marchantia polymorpha HOM05D004493 ORTHO05D005117 9.2e-09 64.3 126 35.7
VMungo0720G2527 Vigna mungo HOM05D004493 ORTHO05D005117 6.0e-08 61.6 49 55.1
FAN03G1805 Fragaria x ananassa HOM05D004493 ORTHO05D005117 1.7e-07 60.1 49 57.1
VMungo0720G0327 Vigna mungo HOM05D004493 ORTHO05D005117 3.9e-07 58.9 46 56.5
Sc06g0004140 Simmondsia chinensis HOM05D004493 ORTHO05D005117 7.3e-06 54.7 45 57.8


User provided reference genes

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