Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001606 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.2e-252 876.3 536 100.0
CSS0025992 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.0e-248 863.2 536 98.7
CSS0031612 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.6e-244 849.4 536 97.0
Dinv41471 Davidia involucrata HOM05D003337 ORTHO05D003808 1.4e-133 480.7 521 66.4
TAR625G0257 Trochodendron aralioides HOM05D003337 ORTHO05D003808 2.2e-97 360.5 532 55.8
Dinv05003 Davidia involucrata HOM05D003337 ORTHO05D003808 2.9e-97 360.1 533 55.9
TAR383G0794 Trochodendron aralioides HOM05D003337 ORTHO05D003808 3.7e-97 359.8 533 55.3
Nitab4.5_0002042g0010 Nicotiana tabacum HOM05D003337 ORTHO05D003808 1.7e-94 350.9 531 54.8
Aqoxy7G02409 Aquilegia oxysepala HOM05D003337 ORTHO05D003808 5.0e-94 349.4 533 54.8
CSS0009940 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 5.6e-93 345.9 585 41.0
Peaxi162Scf00136g02012 Petunia axillaris HOM05D003337 ORTHO05D003808 2.3e-91 340.5 531 53.7
Nitab4.5_0004664g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 6.8e-91 339.0 531 54.2
CSS0040129 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 8.9e-91 338.6 529 54.6
FAN24G1139 Fragaria x ananassa HOM05D003337 ORTHO05D003808 3.7e-89 333.2 531 53.5
Nn8g39563 Nelumbo nucifera HOM05D003337 ORTHO05D003808 1.4e-88 331.3 533 53.8
PSO017G4016 Papaver somniferum HOM05D003337 ORTHO05D003808 1.9e-88 330.9 533 54.0
CiPaw.08G010200 Carya illinoinensis HOM05D003337 ORTHO05D003808 3.2e-88 330.1 531 52.5
RcHm_v2.0_Chr6g0297611 Rosa chinensis HOM05D003337 ORTHO05D003808 9.2e-88 328.6 531 52.7
Cc08_g00460 Coffea canephora HOM05D003337 ORTHO05D003808 1.6e-87 327.8 534 52.8
Nn2g12124 Nelumbo nucifera HOM05D003337 ORTHO05D003808 2.0e-87 327.4 534 52.4
Sabra06G0200600 Salix brachista HOM05D003337 ORTHO05D003808 2.0e-87 327.4 522 53.3
PSO170G2416 Papaver somniferum HOM05D003337 ORTHO05D003808 2.7e-87 327.0 533 53.8
FvH4_2g28850 Fragaria vesca HOM05D003337 ORTHO05D003808 4.6e-87 326.2 531 53.5
FAN20G0291 Fragaria x ananassa HOM05D003337 ORTHO05D003808 6.0e-87 325.9 531 52.7
FAN27G2849 Fragaria x ananassa HOM05D003337 ORTHO05D003808 6.0e-87 325.9 531 52.7
MD15G1127100 Malus domestica HOM05D003337 ORTHO05D003808 6.0e-87 325.9 530 53.0
FAN15G2120 Fragaria x ananassa HOM05D003337 ORTHO05D003808 7.8e-87 325.5 531 52.9
CAN.G130.8 Capsicum annuum HOM05D003337 ORTHO05D003808 1.7e-86 324.3 530 52.5
ClCG05G016760 Citrullus lanatus HOM05D003337 ORTHO05D003808 5.0e-86 322.8 533 52.2
Haze_21497 Corylus avellana HOM05D003337 ORTHO05D003808 5.0e-86 322.8 531 53.1
Ciclev10007238m.g Citrus clementina HOM05D003337 ORTHO05D003808 6.6e-86 322.4 530 52.8
QL02p021300 Quercus lobata HOM05D003337 ORTHO05D003808 1.9e-85 320.9 531 52.7
DCAR_001543 Daucus carota HOM05D003337 ORTHO05D003808 2.5e-85 320.5 535 53.5
Nitab4.5_0000165g0080 Nicotiana tabacum HOM05D003337 ORTHO05D003808 3.3e-85 320.1 530 52.5
Duzib168G1956 Durio zibethinus HOM05D003337 ORTHO05D003808 4.3e-85 319.7 532 52.8
MBI14_g37827_MAGBIO Magnolia biondii HOM05D003337 ORTHO05D003808 4.3e-85 319.7 533 52.3
Manes.16G123500 Manihot esculenta HOM05D003337 ORTHO05D003808 1.6e-84 317.8 535 53.3
Atru.chr7.2458 Acer truncatum HOM05D003337 ORTHO05D003808 2.8e-84 317.0 527 52.4
CSS0014408 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 3.6e-84 316.6 529 52.2
Eucgr.C01723 Eucalyptus grandis HOM05D003337 ORTHO05D003808 8.1e-84 315.5 531 48.2
CSS0019364 Camellia sinensis var. sinensis HOM05D003337 ORTHO05D003808 1.1e-83 315.1 529 52.0
Thecc.09G022400 Theobroma cacao HOM05D003337 ORTHO05D003808 1.1e-83 315.1 531 52.4
Phvul.009G091900 Phaseolus vulgaris HOM05D003337 ORTHO05D003808 1.4e-83 314.7 531 51.6
Potri.006G256400 Populus trichocarpa HOM05D003337 ORTHO05D003808 1.8e-83 314.3 522 52.9
GSVIVG01035878001 Vitis vinifera HOM05D003337 ORTHO05D003808 2.3e-83 313.9 533 51.6
COL.COLO4_18879 Corchorus olitorius HOM05D003337 ORTHO05D003808 3.1e-83 313.5 531 52.2
Glyma.04G065500 Glycine max HOM05D003337 ORTHO05D003808 3.1e-83 313.5 531 51.4
Psat5g029560 Pisum sativum HOM05D003337 ORTHO05D003808 4.0e-83 313.2 534 51.1
GSVIVG01015601001 Vitis vinifera HOM05D003337 ORTHO05D003808 1.5e-82 311.2 522 51.0
Actinidia14594 Actinidia chinensis HOM05D003337 ORTHO05D003808 3.4e-82 310.1 534 52.2
Sed0024031 Sechium edule HOM05D003337 ORTHO05D003808 5.8e-82 309.3 520 53.1
Prupe.1G482800 Prunus persica HOM05D003337 ORTHO05D003808 1.3e-81 308.1 529 52.2
Hma1.2p1_0243F.1_g101010 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 2.2e-81 307.4 520 53.3
Manes.03G013300 Manihot esculenta HOM05D003337 ORTHO05D003808 2.2e-81 307.4 530 51.1
MSTRG.26016 Avicennia marina HOM05D003337 ORTHO05D003808 2.9e-81 307.0 533 51.4
Sed0015158 Sechium edule HOM05D003337 ORTHO05D003808 2.9e-81 307.0 522 52.3
Potri.018G025600 Populus trichocarpa HOM05D003337 ORTHO05D003808 4.9e-81 306.2 531 51.6
Zm00001eb184600 Zea mays HOM05D003337 ORTHO05D003808 1.1e-80 305.1 517 49.7
Nitab4.5_0001294g0060 Nicotiana tabacum HOM05D003337 ORTHO05D003808 4.1e-80 303.1 554 50.0
EL10Ac2g04195 Beta vulgaris HOM05D003337 ORTHO05D003808 5.4e-80 302.8 516 51.0
Lj1g0009523 Lotus japonicus HOM05D003337 ORTHO05D003808 5.4e-80 302.8 531 51.2
VMungo1309G0140 Vigna mungo HOM05D003337 ORTHO05D003808 5.4e-80 302.8 531 51.0
Glyma.06G066900 Glycine max HOM05D003337 ORTHO05D003808 7.1e-80 302.4 533 50.7
ECA246G2127 Erigeron canadensis HOM05D003337 ORTHO05D003808 9.2e-80 302.0 524 51.5
CsaV3_3G046270 Cucumis sativus L. HOM05D003337 ORTHO05D003808 2.1e-79 300.8 533 51.2
TWI34G0528 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 6.0e-79 299.3 531 51.0
Gorai.009G059100 Gossypium raimondii HOM05D003337 ORTHO05D003808 7.8e-79 298.9 528 51.1
Lalb_Chr23g0268451 Lupinus albus HOM05D003337 ORTHO05D003808 1.0e-78 298.5 531 51.4
TWI32G1054 Tripterygium wilfordii HOM05D003337 ORTHO05D003808 1.0e-78 298.5 524 52.3
arahy.Tifrunner.gnm1.ann1.C340QI Arachis hypogaea HOM05D003337 ORTHO05D003808 1.7e-78 297.7 528 50.6
MELO3C003713.2 Cucumis melo HOM05D003337 ORTHO05D003808 3.9e-78 296.6 533 51.0
arahy.Tifrunner.gnm1.ann1.EV8XFE Arachis hypogaea HOM05D003337 ORTHO05D003808 1.1e-77 295.0 528 50.4
Duzib187G1394 Durio zibethinus HOM05D003337 ORTHO05D003808 3.3e-77 293.5 523 51.1
Lalb_Chr11g0063671 Lupinus albus HOM05D003337 ORTHO05D003808 9.5e-77 292.0 529 50.9
Medtr3g106700 Medicago truncatula HOM05D003337 ORTHO05D003808 9.5e-77 292.0 534 50.0
Gohir.D05G058000 Gossypium hirsutum HOM05D003337 ORTHO05D003808 2.8e-76 290.4 528 50.6
Hund25887 Selenicereus undatus HOM05D003337 ORTHO05D003808 2.8e-76 290.4 537 49.2
Gohir.A05G055800 Gossypium hirsutum HOM05D003337 ORTHO05D003808 3.6e-76 290.0 531 50.3
Rhsim02G0202500 Rhododendron simsii HOM05D003337 ORTHO05D003808 3.6e-76 290.0 523 50.7
Sc09g0010250 Simmondsia chinensis HOM05D003337 ORTHO05D003808 8.1e-76 288.9 535 49.2
AUR62031541 Chenopodium quinoa HOM05D003337 ORTHO05D003808 1.1e-75 288.5 534 50.0
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 4.0e-75 286.6 531 49.7
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 4.0e-75 286.6 531 49.7
PGR031G1540 Punica granatum HOM05D003337 ORTHO05D003808 1.5e-74 284.6 537 50.3
Sabra18G0028200 Salix brachista HOM05D003337 ORTHO05D003808 1.5e-74 284.6 590 35.1
TPR.G3117 Trifolium pratense HOM05D003337 ORTHO05D003808 5.8e-74 282.7 534 49.8
AUR62012417 Chenopodium quinoa HOM05D003337 ORTHO05D003808 7.6e-74 282.3 534 48.9
Aa31sc102G10 Aethionema arabicum HOM05D003337 ORTHO05D003808 1.7e-73 281.2 533 48.6
MD08G1156500 Malus domestica HOM05D003337 ORTHO05D003808 1.7e-73 281.2 524 50.2
Hma1.2p1_2800F.1_g328770 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 6.4e-73 279.3 574 36.9
SHI18538 Sapria himalayana HOM05D003337 ORTHO05D003808 1.1e-72 278.5 525 51.0
vmacro11183 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 2.4e-72 277.3 592 44.9
HanXRQChr05g0134851 Helianthus annuus HOM05D003337 ORTHO05D003808 3.2e-72 276.9 537 49.3
Lsat_1_v5_gn_5_30121 Lactuca sativa HOM05D003337 ORTHO05D003808 9.2e-72 275.4 531 48.8
Sopen06g008090 Solanum pennellii HOM05D003337 ORTHO05D003808 9.2e-72 275.4 522 50.0
HPP92_015261 Vanilla planifolia HOM05D003337 ORTHO05D003808 2.1e-71 274.2 518 45.9
SEGI_13524 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 3.5e-71 273.5 519 48.7
Oeu053108.1 Olea europaea HOM05D003337 ORTHO05D003808 1.3e-70 271.6 531 49.2
SalBow4G0163 Salvia bowleyana HOM05D003337 ORTHO05D003808 2.3e-70 270.8 527 49.7
SGA_v2.0_scaffold64G21955 Striga asiatica HOM05D003337 ORTHO05D003808 4.3e-69 266.5 529 41.2
Carub.0004s0499 Capsella rubella HOM05D003337 ORTHO05D003808 5.2e-67 259.6 534 46.3
Migut.A00028 Erythranthe guttata HOM05D003337 ORTHO05D003808 3.4e-66 256.9 523 48.6
Mapoly0008s0250 Marchantia polymorpha HOM05D003337 ORTHO05D003808 4.4e-66 256.5 520 48.5
Lj7C724G9 Lonicera japonica HOM05D003337 ORTHO05D003808 3.8e-65 253.4 527 48.4
Pp3c2_25350 Physcomitrium patens HOM05D003337 ORTHO05D003808 6.4e-65 252.7 546 46.5
Pp3c2_25380 Physcomitrium patens HOM05D003337 ORTHO05D003808 6.4e-65 252.7 546 46.5
Ah.16g104580 Amaranthus hybridus HOM05D003337 ORTHO05D003808 1.1e-64 251.9 536 47.8
AL4G16700 Arabidopsis lyrata HOM05D003337 ORTHO05D003808 9.3e-64 248.8 534 45.7
BcaB08g35177 Brassica carinata HOM05D003337 ORTHO05D003808 6.0e-63 246.1 517 46.8
CDE02G1979 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 6.6e-62 242.7 532 46.4
Dinv18205 Davidia involucrata HOM05D003337 ORTHO05D003808 8.7e-62 242.3 304 48.7
TAR636G2033 Trochodendron aralioides HOM05D003337 ORTHO05D003808 8.7e-62 242.3 287 49.8
Hma1.2p1_0497F.1_g166430 Hydrangea macrophylla HOM05D003337 ORTHO05D003808 2.5e-61 240.7 457 38.5
unitig_748.g8275 Utricularia gibba HOM05D003337 ORTHO05D003808 2.4e-59 234.2 536 45.1
AagrBONN_evm.TU.Sc2ySwM_344.2463 Anthoceros agrestis HOM05D003337 ORTHO05D003808 7.6e-58 229.2 518 46.1
CiPaw.07G224800 Carya illinoinensis HOM05D003337 ORTHO05D003808 1.7e-57 228.0 305 44.6
CARHR116200 Cardamine hirsuta HOM05D003337 ORTHO05D003808 2.9e-57 227.3 518 43.8
Thecc.09G133400 Theobroma cacao HOM05D003337 ORTHO05D003808 3.8e-57 226.9 524 46.0
Thhalv10000009m.g Eutrema salsugineum HOM05D003337 ORTHO05D003808 4.2e-56 223.4 518 44.6
Sp4g04460 Schrenkiella parvula HOM05D003337 ORTHO05D003808 4.2e-56 223.4 519 44.3
BraA09t40970Z Brassica rapa HOM05D003337 ORTHO05D003808 7.1e-56 222.6 517 44.9
BcaC07g40870 Brassica carinata HOM05D003337 ORTHO05D003808 2.7e-55 220.7 517 44.7
CBR_g20432 Chara braunii HOM05D003337 ORTHO05D003808 1.0e-54 218.8 537 44.5
BcaC02g08354 Brassica carinata HOM05D003337 ORTHO05D003808 3.0e-54 217.2 535 43.6
C04p55320 Brassica napus HOM05D003337 ORTHO05D003808 3.0e-54 217.2 534 44.0
SEGI_23839 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 5.1e-54 216.5 519 45.3
Gohir.A05G055900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 1.5e-53 214.9 286 46.2
A04p19680 Brassica napus HOM05D003337 ORTHO05D003808 1.9e-53 214.5 534 43.4
BolC4t27068H Brassica oleracea HOM05D003337 ORTHO05D003808 1.9e-53 214.5 534 44.2
BolC8t51439H Brassica oleracea HOM05D003337 ORTHO05D003808 1.9e-53 214.5 517 44.1
BraA04t17558Z Brassica rapa HOM05D003337 ORTHO05D003808 1.9e-53 214.5 534 43.4
Potri.006G065300 Populus trichocarpa HOM05D003337 ORTHO05D003808 2.5e-53 214.2 535 45.0
A09p55690 Brassica napus HOM05D003337 ORTHO05D003808 9.6e-53 212.2 517 44.1
C08p38690 Brassica napus HOM05D003337 ORTHO05D003808 9.6e-53 212.2 518 43.8
ATR0739G172 Amborella trichopoda HOM05D003337 ORTHO05D003808 7.6e-50 202.6 528 44.7
Oeu012290.1 Olea europaea HOM05D003337 ORTHO05D003808 5.5e-48 196.4 440 49.1
Pp3c2_25330 Physcomitrium patens HOM05D003337 ORTHO05D003808 1.6e-47 194.9 474 46.6
CDE05G2189 Ceratophyllum demersum HOM05D003337 ORTHO05D003808 2.7e-47 194.1 380 53.7
BcaB06g28056 Brassica carinata HOM05D003337 ORTHO05D003808 3.5e-47 193.7 536 30.2
Lalb_Chr08g0244191 Lupinus albus HOM05D003337 ORTHO05D003808 1.5e-45 188.3 240 47.1
Pp3c1_12560 Physcomitrium patens HOM05D003337 ORTHO05D003808 1.9e-45 188.0 471 45.6
AT2G25320 Arabidopsis thaliana HOM05D003337 ORTHO05D003808 1.1e-43 182.2 303 36.3
Cpa.g.sc217.15 Carica papaya HOM05D003337 ORTHO05D003808 7.9e-39 166.0 530 41.5
SEGI_27956 Sequoiadendron giganteum HOM05D003337 ORTHO05D003808 7.6e-34 149.4 317 34.1
Actinidia15665 Actinidia chinensis HOM05D003337 ORTHO05D003808 2.9e-33 147.5 149 54.4
SMO144G0040 Selaginella moellendorffii HOM05D003337 ORTHO05D003808 3.8e-33 147.1 539 36.7
Ca_15750_v3 Cicer arietinum L. HOM05D003337 ORTHO05D003808 9.3e-32 142.5 153 53.6
Eucgr.L02163 Eucalyptus grandis HOM05D003337 ORTHO05D003808 1.7e-28 131.7 145 50.3
Gorai.010G061000 Gossypium raimondii HOM05D003337 ORTHO05D003808 2.4e-27 127.9 311 29.6
Lalb_Chr08g0244201 Lupinus albus HOM05D003337 ORTHO05D003808 2.4e-27 127.9 153 49.0
Gohir.D06G052600 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.9e-27 126.3 311 29.3
Gohir.A06G053550 Gossypium hirsutum HOM05D003337 ORTHO05D003808 6.5e-25 119.8 311 29.3
Eucgr.L02898 Eucalyptus grandis HOM05D003337 ORTHO05D003808 5.5e-24 116.7 138 48.6
Os02g0613400 Oryza sativa ssp. japonica HOM05D003337 ORTHO05D003808 3.9e-22 110.5 264 54.2
Oeu060140.1 Olea europaea HOM05D003337 ORTHO05D003808 4.5e-18 97.1 244 34.8
COL.COLO4_35177 Corchorus olitorius HOM05D003337 ORTHO05D003808 1.8e-14 85.1 310 47.7
Eucgr.L02899 Eucalyptus grandis HOM05D003337 ORTHO05D003808 2.3e-14 84.7 79 53.2
vmacro15258 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 4.8e-12 77.0 191 33.5
SalBow2G2138 Salvia bowleyana HOM05D003337 ORTHO05D003808 1.8e-11 75.1 188 33.5
vmacro22595 Vaccinium macrocarpon HOM05D003337 ORTHO05D003808 4.1e-11 73.9 123 41.5
Psat7g005400 Pisum sativum HOM05D003492 ORTHO05D024801 3.5e-10 70.9 88 45.5
MSTRG.11604 Avicennia marina HOM05D003337 ORTHO05D003808 1.0e-09 69.3 59 55.9
HPP92_010004 Vanilla planifolia HOM05D003337 ORTHO05D003808 1.3e-09 68.9 103 41.7
HPP92_010003 Vanilla planifolia HOM05D003337 ORTHO05D003808 6.1e-07 60.1 197 54.3
Rhsim02G0021900 Rhododendron simsii HOM05D003337 ORTHO05D003808 1.4e-06 58.9 111 37.8


User provided reference genes

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