Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001597 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 2.4e-33 144.8 67 100.0
CSS0033478 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.5e-32 142.1 67 98.5
SGA_v2.0_scaffold114G31867 Striga asiatica HOM05D004313 ORTHO05D005036 3.3e-19 97.8 53 86.8
MSTRG.4395 Avicennia marina HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
CAN.G628.58 Capsicum annuum HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Dinv07987 Davidia involucrata HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Duzib084G0573 Durio zibethinus HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Migut.D01890 Erythranthe guttata HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Nitab4.5_0000003g0130 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Nitab4.5_0000758g0080 Nicotiana tabacum HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Peaxi162Scf00689g00546 Petunia axillaris HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Thecc.03G071100 Theobroma cacao HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
unitig_21.g20456 Utricularia gibba HOM05D004313 ORTHO05D005036 1.8e-17 92.0 42 97.6
Cfa019038 Carpinus fangiana HOM05D004313 ORTHO05D005036 3.1e-17 91.3 42 95.2
Duzib205G0385 Durio zibethinus HOM05D004313 ORTHO05D005036 3.1e-17 91.3 42 95.2
Nn4g22972 Nelumbo nucifera HOM05D004313 ORTHO05D005036 4.0e-17 90.9 42 95.2
PSO591G0306 Papaver somniferum HOM05D004313 ORTHO05D005036 4.0e-17 90.9 42 95.2
PSO832G0682 Papaver somniferum HOM05D004313 ORTHO05D005036 4.0e-17 90.9 42 95.2
SalBow3G4066 Salvia bowleyana HOM05D004313 ORTHO05D005036 4.0e-17 90.9 41 100.0
GSVIVG01007840001 Vitis vinifera HOM05D004313 ORTHO05D005036 4.0e-17 90.9 42 95.2
Actinidia04946 Actinidia chinensis HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Actinidia37681 Actinidia chinensis HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Dinv13117 Davidia involucrata HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Hma1.2p1_0002F.1_g003010 Hydrangea macrophylla HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Rhsim08G0163500 Rhododendron simsii HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Solyc06g071200.3 Solanum lycopersicum HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Sopen06g027510 Solanum pennellii HOM05D004313 ORTHO05D005036 5.3e-17 90.5 42 95.2
Aqoxy3G03179 Aquilegia oxysepala HOM05D004313 ORTHO05D005036 6.9e-17 90.1 42 92.9
Ciclev10018728m.g Citrus clementina HOM05D004313 ORTHO05D005036 6.9e-17 90.1 42 95.2
Haze_07414 Corylus avellana HOM05D004313 ORTHO05D005036 6.9e-17 90.1 41 97.6
Eucgr.B00381 Eucalyptus grandis HOM05D004313 ORTHO05D005036 6.9e-17 90.1 42 95.2
AUR62008311 Chenopodium quinoa HOM05D004313 ORTHO05D005036 9.0e-17 89.7 42 92.9
Gohir.A07G071100 Gossypium hirsutum HOM05D004313 ORTHO05D005036 9.0e-17 89.7 42 95.2
Gorai.001G079800 Gossypium raimondii HOM05D004313 ORTHO05D005036 9.0e-17 89.7 42 95.2
ClCG06G016580 Citrullus lanatus HOM05D004313 ORTHO05D005036 1.2e-16 89.4 42 92.9
COL.COLO4_07633 Corchorus olitorius HOM05D004313 ORTHO05D005036 1.2e-16 89.4 42 92.9
MELO3C017136.2 Cucumis melo HOM05D004313 ORTHO05D005036 1.2e-16 89.4 42 92.9
CsaV3_1G001930 Cucumis sativus L. HOM05D004313 ORTHO05D005036 1.2e-16 89.4 42 92.9
TAR629G1960 Trochodendron aralioides HOM05D004313 ORTHO05D005036 1.2e-16 89.4 42 92.9
unitig_744.g24391 Utricularia gibba HOM05D004313 ORTHO05D005036 1.2e-16 89.4 42 97.6
CiPaw.11G034400 Carya illinoinensis HOM05D004313 ORTHO05D005036 2.0e-16 88.6 42 90.5
AUR62021785 Chenopodium quinoa HOM05D004313 ORTHO05D005036 2.0e-16 88.6 41 95.1
DCAR_031273 Daucus carota HOM05D004313 ORTHO05D005036 2.0e-16 88.6 42 88.1
MD06G1183500 Malus domestica HOM05D004313 ORTHO05D005036 2.0e-16 88.6 42 90.5
Prupe.5G182200 Prunus persica HOM05D004313 ORTHO05D005036 2.0e-16 88.6 42 90.5
Ah.11g045580 Amaranthus hybridus HOM05D004313 ORTHO05D005036 2.6e-16 88.2 42 90.5
EL10Ac5g10873 Beta vulgaris HOM05D004313 ORTHO05D005036 2.6e-16 88.2 42 90.5
Hund09391 Selenicereus undatus HOM05D004313 ORTHO05D005036 2.6e-16 88.2 42 90.5
Cc04_g16080 Coffea canephora HOM05D004313 ORTHO05D005036 3.4e-16 87.8 42 92.9
Gohir.D07G075600 Gossypium hirsutum HOM05D004313 ORTHO05D005036 3.4e-16 87.8 41 95.1
Sed0007676 Sechium edule HOM05D004313 ORTHO05D005036 3.4e-16 87.8 42 90.5
TWI60G1492 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 4.5e-16 87.4 42 88.1
arahy.Tifrunner.gnm1.ann1.PL6DWX Arachis hypogaea HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 90.5
arahy.Tifrunner.gnm1.ann1.ZX441X Arachis hypogaea HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 90.5
Cpa.g.sc203.11 Carica papaya HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 90.5
Glyma.05G031900 Glycine max HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 90.5
Glyma.17G094800 Glycine max HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 90.5
Lj9A456G24 Lonicera japonica HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 88.1
MD14G1189600 Malus domestica HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 88.1
TWI81G0241 Tripterygium wilfordii HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 88.1
VMungo1215G1877 Vigna mungo HOM05D004313 ORTHO05D005036 7.6e-16 86.7 42 90.5
RcHm_v2.0_Chr7g0180041 Rosa chinensis HOM05D004313 ORTHO05D005036 1.3e-15 85.9 42 90.5
CiPaw.12G022100 Carya illinoinensis HOM05D004313 ORTHO05D005036 1.7e-15 85.5 42 88.1
Potri.012G073600 Populus trichocarpa HOM05D004313 ORTHO05D005036 1.7e-15 85.5 42 88.1
Ca_21869_v3 Cicer arietinum L. HOM05D004313 ORTHO05D005036 2.2e-15 85.1 42 88.1
Lalb_Chr07g0182441 Lupinus albus HOM05D004313 ORTHO05D005036 2.2e-15 85.1 42 88.1
Psat4g054720 Pisum sativum HOM05D004313 ORTHO05D005036 2.2e-15 85.1 42 88.1
TPR.G38443 Trifolium pratense HOM05D004313 ORTHO05D005036 2.2e-15 85.1 42 88.1
Lj4g0005973 Lotus japonicus HOM05D004313 ORTHO05D005036 2.9e-15 84.7 42 88.1
QL10p014006 Quercus lobata HOM05D004313 ORTHO05D005036 2.9e-15 84.7 42 85.7
Phvul.003G195400 Phaseolus vulgaris HOM05D004313 ORTHO05D005036 3.8e-15 84.3 42 88.1
Sc12g0005870 Simmondsia chinensis HOM05D004313 ORTHO05D005036 3.8e-15 84.3 42 85.7
TAR374G1555 Trochodendron aralioides HOM05D004313 ORTHO05D005036 3.8e-15 84.3 42 88.1
Potri.015G068600 Populus trichocarpa HOM05D004313 ORTHO05D005036 4.9e-15 84.0 42 85.7
Medtr4g107290 Medicago truncatula HOM05D004313 ORTHO05D005036 1.1e-14 82.8 42 85.7
HPP92_025605 Vanilla planifolia HOM05D004313 ORTHO05D005036 1.4e-14 82.4 42 85.7
FvH4_5g16030 Fragaria vesca HOM05D004313 ORTHO05D005036 1.9e-14 82.0 42 83.3
FAN18G3297 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.9e-14 82.0 42 83.3
CANSAT80G2445 Cannabis sativa HOM05D004313 ORTHO05D005036 3.2e-14 81.3 42 81.0
Lsat_1_v5_gn_4_106321 Lactuca sativa HOM05D004313 ORTHO05D005036 4.2e-14 80.9 42 83.3
BcaNung01388 Brassica carinata HOM05D004313 ORTHO05D005036 9.3e-14 79.7 42 81.0
Aa31LG11G1040 Aethionema arabicum HOM05D004313 ORTHO05D005036 1.2e-13 79.3 42 81.0
ECA232G1058 Erigeron canadensis HOM05D004313 ORTHO05D005036 1.2e-13 79.3 42 81.0
CARHR276380 Cardamine hirsuta HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
Thhalv10003602m.g Eutrema salsugineum HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
FAN04G0114 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
FAN13G2316 Fragaria x ananassa HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
Sp2g25780 Schrenkiella parvula HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
THA.LOC104818250 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
THA.LOC104819430 Tarenaya hassleriana HOM05D004313 ORTHO05D005036 1.6e-13 79.0 42 81.0
AL8G39490 Arabidopsis lyrata HOM05D004313 ORTHO05D005036 2.7e-13 78.2 42 81.0
Carub.0008s2330 Capsella rubella HOM05D004313 ORTHO05D005036 2.7e-13 78.2 42 81.0
FAN08G2034 Fragaria x ananassa HOM05D004313 ORTHO05D005036 4.6e-13 77.4 42 78.6
HanXRQChr09g0271451 Helianthus annuus HOM05D004313 ORTHO05D005036 4.6e-13 77.4 42 81.0
AT5G62600 Arabidopsis thaliana HOM05D004313 ORTHO05D005036 6.0e-13 77.0 42 78.6
BcaC01g02491 Brassica carinata HOM05D004313 ORTHO05D005036 6.0e-13 77.0 42 78.6
CSS0019418 Camellia sinensis var. sinensis HOM05D004313 ORTHO05D005036 1.0e-12 76.3 42 78.6
C03p64200 Brassica napus HOM05D004313 ORTHO05D005036 1.3e-12 75.9 41 80.5
BolC3t18678H Brassica oleracea HOM05D004313 ORTHO05D005036 1.3e-12 75.9 41 80.5
ATR0322G074 Amborella trichopoda HOM05D004313 ORTHO05D005036 1.8e-12 75.5 41 78.0
BcaC04g23404 Brassica carinata HOM05D004313 ORTHO05D005036 1.8e-12 75.5 42 76.2
A06p29280 Brassica napus HOM05D004313 ORTHO05D005036 3.9e-12 74.3 41 78.0
BolC9t53779H Brassica oleracea HOM05D004313 ORTHO05D005036 3.9e-12 74.3 41 78.0
BraA06t25884Z Brassica rapa HOM05D004313 ORTHO05D005036 3.9e-12 74.3 41 78.0
SHI08465 Sapria himalayana HOM05D004313 ORTHO05D005036 1.9e-11 72.0 42 69.0
Zm00001eb045810 Zea mays HOM05D004313 ORTHO05D005036 7.4e-11 70.1 37 78.4
Zm00001eb221820 Zea mays HOM05D004313 ORTHO05D005036 7.4e-11 70.1 37 78.4
Os10g0477800 Oryza sativa ssp. japonica HOM05D004313 ORTHO05D005036 3.7e-10 67.8 44 72.7
Manes.06G098800 Manihot esculenta HOM05D004313 ORTHO05D005036 1.1e-09 66.2 42 69.0
SEGI_36637 Sequoiadendron giganteum HOM05D004313 ORTHO05D005036 9.0e-09 63.2 40 62.5
Pp3c11_11570 Physcomitrium patens HOM05D004313 ORTHO05D005036 1.7e-07 58.9 37 64.9
SMO144G0109 Selaginella moellendorffii HOM05D004313 ORTHO05D005036 6.5e-07 57.0 40 60.0
CBR_g24406 Chara braunii HOM05D004313 ORTHO05D005036 8.4e-07 56.6 37 62.2


User provided reference genes

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