Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001570 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.9e-100 368.2 197 100.0
CSS0009679 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.6e-51 204.1 164 75.0
CSS0049071 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 1.4e-49 200.3 158 75.9
CSS0027559 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 9.0e-41 171.0 229 52.8
Actinidia00336 Actinidia chinensis HOM05D004882 ORTHO05D005551 1.3e-36 157.1 148 62.2
Actinidia02424 Actinidia chinensis HOM05D004882 ORTHO05D005551 4.1e-33 145.6 167 55.7
CSS0002606 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 3.8e-31 139.0 230 46.1
CSS0014319 Camellia sinensis var. sinensis HOM05D004882 ORTHO05D005551 5.0e-31 138.7 230 46.1
Rhsim11G0146400 Rhododendron simsii HOM05D004882 ORTHO05D000089 7.9e-29 131.3 173 50.3
Dinv16049 Davidia involucrata HOM05D004882 ORTHO05D005551 7.4e-27 124.8 157 54.8
Hma1.2p1_2001F.1_g310650 Hydrangea macrophylla HOM05D004882 ORTHO05D005551 5.0e-23 112.1 208 43.8
Cfa004757 Carpinus fangiana HOM05D004882 ORTHO05D005551 2.2e-18 96.7 175 44.6
Lj5C223T12 Lonicera japonica HOM05D004882 ORTHO05D005551 6.3e-18 95.1 184 44.0
Potri.009G081900 Populus trichocarpa HOM05D004882 ORTHO05D005551 1.4e-17 94.0 161 42.9
Sopen01g048900 Solanum pennellii HOM05D004882 ORTHO05D005551 2.9e-15 86.3 130 43.1
Nitab4.5_0001477g0110 Nicotiana tabacum HOM05D004882 ORTHO05D005551 3.8e-15 85.9 200 35.5
Solyc01g106540.4 Solanum lycopersicum HOM05D004882 ORTHO05D005551 6.5e-15 85.1 130 43.1
TAR376G0385 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.9e-14 83.6 184 39.7
TAR628G0407 Trochodendron aralioides HOM05D004882 ORTHO05D005551 1.9e-14 83.6 185 40.0
MBI16_g35720_MAGBIO Magnolia biondii HOM05D004882 ORTHO05D005551 2.5e-14 83.2 173 38.2
Thecc.02G034500 Theobroma cacao HOM05D004882 ORTHO05D005551 2.5e-14 83.2 171 35.1
Potri.001G287800 Populus trichocarpa HOM05D004882 ORTHO05D005551 4.2e-14 82.4 159 39.6
QL11p027705 Quercus lobata HOM05D004882 ORTHO05D005551 5.5e-14 82.0 174 42.0
Haze_10355 Corylus avellana HOM05D004882 ORTHO05D005551 9.4e-14 81.3 189 38.6
GSVIVG01036969001 Vitis vinifera HOM05D004882 ORTHO05D005551 9.4e-14 81.3 103 50.5
Eucgr.I02514 Eucalyptus grandis HOM05D004882 ORTHO05D005551 1.2e-13 80.9 157 41.4
Nn6g34538 Nelumbo nucifera HOM05D004882 ORTHO05D005551 1.2e-13 80.9 258 35.3
CiPaw.05G024800 Carya illinoinensis HOM05D004882 ORTHO05D005551 1.6e-13 80.5 225 33.8
AUR62027054 Chenopodium quinoa HOM05D004882 ORTHO05D005551 1.6e-13 80.5 168 38.7
MD10G1114900 Malus domestica HOM05D004882 ORTHO05D005551 2.7e-13 79.7 203 36.0
Manes.10G090200 Manihot esculenta HOM05D004882 ORTHO05D005551 2.7e-13 79.7 155 37.4
Sabra09G0063500 Salix brachista HOM05D004882 ORTHO05D005551 2.7e-13 79.7 177 41.8
MSTRG.16657 Avicennia marina HOM05D004882 ORTHO05D005551 3.6e-13 79.3 184 35.9
Haze_10351 Corylus avellana HOM05D004882 ORTHO05D005551 4.7e-13 79.0 191 37.7
MD05G1112300 Malus domestica HOM05D004882 ORTHO05D005551 4.7e-13 79.0 226 35.8
Nitab4.5_0005609g0020 Nicotiana tabacum HOM05D004882 ORTHO05D005551 6.1e-13 78.6 216 33.3
FvH4_2g02560 Fragaria vesca HOM05D004882 ORTHO05D005551 1.0e-12 77.8 176 37.5
FAN24G2723 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.0e-12 77.8 176 37.5
Duzib132G0818 Durio zibethinus HOM05D004882 ORTHO05D005551 1.8e-12 77.0 175 37.1
Peaxi162Scf00016g03342 Petunia axillaris HOM05D004882 ORTHO05D005551 1.8e-12 77.0 152 38.8
Aqoxy5G00818 Aquilegia oxysepala HOM05D004882 ORTHO05D005551 2.3e-12 76.6 143 39.9
Sc08g0004240 Simmondsia chinensis HOM05D004882 ORTHO05D005551 2.3e-12 76.6 164 37.8
COL.COLO4_17832 Corchorus olitorius HOM05D004882 ORTHO05D005551 3.0e-12 76.3 202 37.1
PGSC0003DMG400005123 Solanum tuberosum HOM05D004882 ORTHO05D005551 3.0e-12 76.3 171 38.6
TWI59G1177 Tripterygium wilfordii HOM05D004882 ORTHO05D005551 3.9e-12 75.9 199 34.7
AUR62030897 Chenopodium quinoa HOM05D004882 ORTHO05D005551 6.7e-12 75.1 143 40.6
FAN27G0728 Fragaria x ananassa HOM05D004882 ORTHO05D005551 6.7e-12 75.1 194 36.6
Duzib248G0647 Durio zibethinus HOM05D004882 ORTHO05D005551 8.8e-12 74.7 217 37.3
Medtr2g010490 Medicago truncatula HOM05D004882 ORTHO05D005551 8.8e-12 74.7 114 42.1
FAN20G2896 Fragaria x ananassa HOM05D004882 ORTHO05D005551 1.1e-11 74.3 213 35.2
Manes.07G049500 Manihot esculenta HOM05D004882 ORTHO05D005551 1.1e-11 74.3 194 34.0
Migut.B00500 Erythranthe guttata HOM05D004882 ORTHO05D005551 1.5e-11 73.9 171 39.2
FAN15G2336 Fragaria x ananassa HOM05D004882 ORTHO05D005551 2.6e-11 73.2 197 37.1
Lj9A340T57 Lonicera japonica HOM05D004882 ORTHO05D005551 5.7e-11 72.0 61 60.7
RcHm_v2.0_Chr6g0246371 Rosa chinensis HOM05D004882 ORTHO05D005551 9.7e-11 71.2 241 31.1
Lj6g0001174 Lotus japonicus HOM05D004882 ORTHO05D005551 1.3e-10 70.9 195 35.4
Cpa.g.sc20.70 Carica papaya HOM05D004882 ORTHO05D005551 1.7e-10 70.5 239 31.4
Gohir.A03G212800 Gossypium hirsutum HOM05D004882 ORTHO05D005551 1.7e-10 70.5 89 50.6
BcaB04g18391 Brassica carinata HOM05D004882 ORTHO05D005551 2.2e-10 70.1 103 48.5
Thhalv10024666m.g Eutrema salsugineum HOM05D004882 ORTHO05D005551 2.8e-10 69.7 125 41.6
PGR142G0772 Punica granatum HOM05D004882 ORTHO05D005551 2.8e-10 69.7 94 44.7
Aa31LG2G13080 Aethionema arabicum HOM05D004882 ORTHO05D005551 3.7e-10 69.3 175 37.1
TPR.G32640 Trifolium pratense HOM05D004882 ORTHO05D005551 3.7e-10 69.3 149 38.9
Cc02_g20370 Coffea canephora HOM05D004882 ORTHO05D005551 4.8e-10 68.9 141 41.1
Ca_00196_v3 Cicer arietinum L. HOM05D004882 ORTHO05D005551 6.3e-10 68.6 66 54.5
Gohir.D02G234300 Gossypium hirsutum HOM05D004882 ORTHO05D005551 6.3e-10 68.6 154 38.3
ATR0739G125 Amborella trichopoda HOM05D004882 ORTHO05D005551 8.2e-10 68.2 104 46.2
CANSAT25G1117 Cannabis sativa HOM05D004882 ORTHO05D005551 8.2e-10 68.2 164 38.4
Gorai.005G262300 Gossypium raimondii HOM05D004882 ORTHO05D005551 1.4e-09 67.4 154 38.3
AL7G37720 Arabidopsis lyrata HOM05D004882 ORTHO05D005551 1.8e-09 67.0 104 44.2
EL10Ac9g22153 Beta vulgaris HOM05D004882 ORTHO05D005551 2.4e-09 66.6 163 36.8
TAR381G0477 Trochodendron aralioides HOM05D004882 ORTHO05D005551 3.1e-09 66.2 88 51.1
VMungo0647G2224 Vigna mungo HOM05D004882 ORTHO05D005551 3.1e-09 66.2 65 60.0
arahy.Tifrunner.gnm1.ann1.6ERH6H Arachis hypogaea HOM05D004882 ORTHO05D005551 4.1e-09 65.9 199 35.7
Sabra16G0180100 Salix brachista HOM05D004882 ORTHO05D005551 4.1e-09 65.9 163 34.4
Glyma.15G061700 Glycine max HOM05D004882 ORTHO05D005551 7.0e-09 65.1 157 37.6
Ah.01g024370 Amaranthus hybridus HOM05D004882 ORTHO05D005551 9.1e-09 64.7 57 63.2
arahy.Tifrunner.gnm1.ann1.189H81 Arachis hypogaea HOM05D004882 ORTHO05D005551 9.1e-09 64.7 197 32.5
Carub.0007s2442 Capsella rubella HOM05D004882 ORTHO05D005551 9.1e-09 64.7 104 42.3
BraA01t01961Z Brassica rapa HOM05D004882 ORTHO05D005551 1.2e-08 64.3 104 43.3
Hund06491 Selenicereus undatus HOM05D004882 ORTHO05D005551 1.2e-08 64.3 191 34.6
AT4G17000 Arabidopsis thaliana HOM05D004882 ORTHO05D005551 2.0e-08 63.5 102 45.1
ECA234G1559 Erigeron canadensis HOM05D004882 ORTHO05D005551 2.0e-08 63.5 225 32.9
Psat1g212160 Pisum sativum HOM05D004882 ORTHO05D005551 4.5e-08 62.4 159 35.8
Prupe.8G156900 Prunus persica HOM05D004882 ORTHO05D005551 4.5e-08 62.4 177 35.6
THA.LOC104807193 Tarenaya hassleriana HOM05D004882 ORTHO05D005551 4.5e-08 62.4 162 35.8
CARHR223560 Cardamine hirsuta HOM05D004882 ORTHO05D005551 7.7e-08 61.6 128 35.2
Sed0010536 Sechium edule HOM05D004882 ORTHO05D005551 7.7e-08 61.6 166 31.3
BcaNung00137 Brassica carinata HOM05D004882 ORTHO05D005551 1.3e-07 60.8 103 39.8
ClCG02G007390 Citrullus lanatus HOM05D004882 ORTHO05D005551 1.7e-07 60.5 154 34.4
Duzib052G0961 Durio zibethinus HOM05D004882 ORTHO05D005551 1.7e-07 60.5 158 34.8
HanXRQChr05g0136851 Helianthus annuus HOM05D004882 ORTHO05D005551 1.7e-07 60.5 190 33.2
PSO170G1497 Papaver somniferum HOM05D004882 ORTHO05D005551 1.7e-07 60.5 172 35.5
SalBow6G6879 Salvia bowleyana HOM05D004882 ORTHO05D005551 1.7e-07 60.5 146 39.7
VMungo0540G0872 Vigna mungo HOM05D004882 ORTHO05D005551 1.7e-07 60.5 216 35.2
Sp7g17190 Schrenkiella parvula HOM05D004882 ORTHO05D005551 2.2e-07 60.1 126 36.5
Glyma.13G253200 Glycine max HOM05D004882 ORTHO05D005551 2.9e-07 59.7 241 30.3
Lalb_Chr18g0060201 Lupinus albus HOM05D004882 ORTHO05D005551 5.0e-07 58.9 50 66.0
A01p20310 Brassica napus HOM05D004882 ORTHO05D005551 1.1e-06 57.8 160 34.4
CsaV3_7G007510 Cucumis sativus L. HOM05D004882 ORTHO05D005551 3.2e-06 56.2 154 34.4
MELO3C018551.2 Cucumis melo HOM05D004882 ORTHO05D005551 4.2e-06 55.8 154 34.4
Phvul.006G198000 Phaseolus vulgaris HOM05D004882 ORTHO05D005551 4.2e-06 55.8 228 30.7
Oeu025237.1 Olea europaea HOM05D004882 ORTHO05D005551 5.5e-06 55.5 219 30.1
PSO017G3844 Papaver somniferum HOM05D004882 ORTHO05D005551 5.5e-06 55.5 176 34.7
BolC8t48423H Brassica oleracea HOM05D004882 ORTHO05D005551 7.2e-06 55.1 129 35.7
HanXRQChr10g0297671 Helianthus annuus HOM05D004882 ORTHO05D005551 7.2e-06 55.1 156 34.6
HPP92_019573 Vanilla planifolia HOM05D004882 ORTHO05D005551 9.4e-06 54.7 158 36.1


User provided reference genes

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