Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001567 Camellia sinensis var. sinensis HOM05D008202 ORTHO05D010302 4.5e-46 187.6 95 100.0
Actinidia39781 Actinidia chinensis HOM05D008202 ORTHO05D010302 2.5e-28 128.6 93 69.9
Actinidia17520 Actinidia chinensis HOM05D008202 ORTHO05D010302 8.0e-27 123.6 95 67.4
Dinv42250 Davidia involucrata HOM05D008202 ORTHO05D010302 1.8e-26 122.5 95 69.5
Rhsim05G0039400 Rhododendron simsii HOM05D008202 ORTHO05D010302 6.7e-26 120.6 100 62.0
vmacro10849 Vaccinium macrocarpon HOM05D008202 ORTHO05D010302 6.3e-24 114.0 78 76.9
Hma1.2p1_0386F.1_g141760 Hydrangea macrophylla HOM05D008202 ORTHO05D010302 1.6e-22 109.4 95 58.9
Dinv36682 Davidia involucrata HOM05D008202 ORTHO05D010302 1.7e-21 105.9 93 61.3
Oeu018577.1 Olea europaea HOM05D008202 ORTHO05D010302 8.5e-21 103.6 89 60.7
GSVIVG01015295001 Vitis vinifera HOM05D008202 ORTHO05D010302 1.5e-20 102.8 97 56.7
Manes.03G026600 Manihot esculenta HOM05D008202 ORTHO05D010302 1.9e-20 102.4 92 62.0
DCAR_028656 Daucus carota HOM05D008202 ORTHO05D010302 9.4e-20 100.1 92 55.4
Thecc.09G099700 Theobroma cacao HOM05D008202 ORTHO05D010302 2.7e-19 98.6 92 57.6
Cc06_g10540 Coffea canephora HOM05D008202 ORTHO05D010302 4.7e-19 97.8 95 54.7
MSTRG.19550 Avicennia marina HOM05D008202 ORTHO05D010302 1.4e-18 96.3 95 51.6
Manes.04G125801 Manihot esculenta HOM05D008202 ORTHO05D010302 4.0e-18 94.7 76 64.5
Manes.13G078801 Manihot esculenta HOM05D008202 ORTHO05D010302 4.0e-18 94.7 76 64.5
Ciclev10010342m.g Citrus clementina HOM05D008202 ORTHO05D010302 6.8e-18 94.0 69 71.0
TWI63G1052 Tripterygium wilfordii HOM05D008202 ORTHO05D010302 1.2e-17 93.2 92 52.2
Lsat_1_v5_gn_8_98261 Lactuca sativa HOM05D008202 ORTHO05D010302 2.0e-17 92.4 93 57.0
Haze_25829 Corylus avellana HOM05D008202 ORTHO05D010302 2.6e-17 92.0 95 51.6
HanXRQChr12g0358111 Helianthus annuus HOM05D008202 ORTHO05D010302 4.4e-17 91.3 96 54.2
Sc18g0001520 Simmondsia chinensis HOM05D008202 ORTHO05D010302 5.7e-17 90.9 95 52.6
SGA_v2.0_scaffold512G52633 Striga asiatica HOM05D008202 ORTHO05D010302 5.7e-17 90.9 100 53.0
EL10Ac8g18376 Beta vulgaris HOM05D008202 ORTHO05D010302 7.5e-17 90.5 95 52.6
AUR62021399 Chenopodium quinoa HOM05D008202 ORTHO05D010302 8.3e-16 87.0 98 49.0
Ah.14g083220 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.4e-15 86.3 100 50.0
Migut.K00545 Erythranthe guttata HOM05D008202 ORTHO05D010302 1.4e-15 86.3 95 51.6
COL.COLO4_34733 Corchorus olitorius HOM05D008202 ORTHO05D010302 1.8e-15 85.9 54 72.2
Peaxi162Scf00720g00418 Petunia axillaris HOM05D008202 ORTHO05D010302 1.8e-15 85.9 59 67.8
AUR62010887 Chenopodium quinoa HOM05D008202 ORTHO05D010302 3.1e-15 85.1 98 48.0
CiPaw.04G157000 Carya illinoinensis HOM05D008202 ORTHO05D010302 5.4e-15 84.3 92 52.2
Ciclev10027258m.g Citrus clementina HOM05D008202 ORTHO05D010302 5.4e-15 84.3 69 65.2
Ah.14g082540 Amaranthus hybridus HOM05D008202 ORTHO05D010302 1.6e-14 82.8 45 80.0
CiPaw.04G155900 Carya illinoinensis HOM05D008202 ORTHO05D010302 2.0e-14 82.4 92 51.1
MD02G1066600 Malus domestica HOM05D008202 ORTHO05D010302 2.0e-14 82.4 92 47.8
Prupe.7G218700 Prunus persica HOM05D008202 ORTHO05D010302 4.5e-14 81.3 90 50.0
PGSC0003DMG400046448 Solanum tuberosum HOM05D001685 ORTHO05D006653 6.5e-13 77.4 94 48.9
Gohir.A06G067500 Gossypium hirsutum HOM05D008202 ORTHO05D010302 1.1e-12 76.6 87 48.3
Gorai.010G077500 Gossypium raimondii HOM05D008202 ORTHO05D010302 3.2e-12 75.1 88 50.0
Solyc04g058130.3 Solanum lycopersicum HOM05D008202 ORTHO05D010302 3.2e-12 75.1 94 47.9
CsaV3_2G001850 Cucumis sativus L. HOM05D008202 ORTHO05D010302 1.2e-11 73.2 76 48.7
FAN26G0167 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.6e-11 72.8 59 61.0
FAN26G3206 Fragaria x ananassa HOM05D008202 ORTHO05D010302 1.6e-11 72.8 59 61.0
CDE08G1102 Ceratophyllum demersum HOM05D008202 ORTHO05D010302 4.7e-11 71.2 87 47.1
FAN23G0175 Fragaria x ananassa HOM05D008202 ORTHO05D010302 4.7e-11 71.2 89 46.1
Atru.chr7.1471 Acer truncatum HOM05D008202 ORTHO05D010302 6.1e-11 70.9 87 47.1
FvH4_1g06280 Fragaria vesca HOM05D008202 ORTHO05D010302 6.1e-11 70.9 89 47.2
FAN19G1093 Fragaria x ananassa HOM05D008202 ORTHO05D010302 6.1e-11 70.9 89 47.2
Nn8g39054 Nelumbo nucifera HOM05D008202 ORTHO05D010302 6.1e-11 70.9 97 42.3
ClCG11G002070 Citrullus lanatus HOM05D008202 ORTHO05D010302 1.0e-10 70.1 73 50.7
RcHm_v2.0_Chr2g0091981 Rosa chinensis HOM05D008202 ORTHO05D010302 1.4e-10 69.7 42 71.4
Ciclev10027039m.g Citrus clementina HOM05D008202 ORTHO05D010302 1.8e-10 69.3 92 45.7
Gohir.D06G066100 Gossypium hirsutum HOM05D008202 ORTHO05D010302 2.3e-10 68.9 89 47.2
Medtr6g088800 Medicago truncatula HOM05D008202 ORTHO05D010302 5.2e-10 67.8 91 39.6
Nitab4.5_0002557g0010 Nicotiana tabacum HOM05D001685 ORTHO05D006653 1.5e-09 66.2 52 61.5
Lalb_Chr14g0371911 Lupinus albus HOM05D008202 ORTHO05D010302 2.6e-09 65.5 93 41.9
PGR102G0794 Punica granatum HOM05D008202 ORTHO05D010302 3.4e-09 65.1 81 43.2
Eucgr.C03726 Eucalyptus grandis HOM05D008202 ORTHO05D010302 1.7e-08 62.8 80 41.2
Psat1g048280 Pisum sativum HOM05D008202 ORTHO05D010302 2.2e-08 62.4 97 42.3
HPP92_009087 Vanilla planifolia HOM05D008202 ORTHO05D010302 3.7e-08 61.6 65 46.2
unitig_52.g17095 Utricularia gibba HOM05D008202 ORTHO05D010302 8.3e-08 60.5 55 50.9
MBI01_g10122_MAGBIO Magnolia biondii HOM05D003005 ORTHO05D004170 1.1e-07 60.1 63 47.6
MD15G1197100 Malus domestica HOM05D008202 ORTHO05D010302 2.4e-07 58.9 86 40.7
unitig_52.g17250 Utricularia gibba HOM05D008202 ORTHO05D010302 1.2e-06 56.6 55 47.3
ATR0705G156 Amborella trichopoda HOM05D008202 ORTHO05D010302 1.6e-06 56.2 63 42.9
Zm00001eb371180 Zea mays HOM05D008202 ORTHO05D010302 2.7e-06 55.5 39 53.8
Os01g0742766 Oryza sativa ssp. japonica HOM05D008202 ORTHO05D010302 3.5e-06 55.1 81 37.0


User provided reference genes

Program Settings