Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001564 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 0.0e+00 1494.2 804 100.0
Hma1.2p1_1837F.1_g304750 Hydrangea macrophylla HOM05D003991 ORTHO05D004883 0.0e+00 1260.0 815 83.4
Lj4A124G55 Lonicera japonica HOM05D003991 ORTHO05D004883 0.0e+00 1236.5 806 80.4
vmacro18126 Vaccinium macrocarpon HOM05D003991 ORTHO05D004883 0.0e+00 1221.1 845 76.9
Ciclev10011098m.g Citrus clementina HOM05D003991 ORTHO05D004883 0.0e+00 1212.6 804 78.0
Rhsim08G0077400 Rhododendron simsii HOM05D003991 ORTHO05D004883 0.0e+00 1198.7 826 78.7
CANSAT64G1645 Cannabis sativa HOM05D003991 ORTHO05D004883 0.0e+00 1196.8 813 77.0
Duzib138G0045 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1191.8 813 78.4
Prupe.3G248800 Prunus persica HOM05D003991 ORTHO05D004883 0.0e+00 1188.3 803 77.1
TWI32G1311 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1184.1 805 76.4
COL.COLO4_10252 Corchorus olitorius HOM05D003991 ORTHO05D004883 0.0e+00 1182.2 812 77.2
Cfa007697 Carpinus fangiana HOM05D003991 ORTHO05D004883 0.0e+00 1181.0 805 78.9
Gorai.001G207000 Gossypium raimondii HOM05D003991 ORTHO05D004883 0.0e+00 1177.2 806 78.3
MD17G1065900 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1175.2 804 76.9
Potri.017G100300 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1174.1 810 77.5
TWI34G0665 Tripterygium wilfordii HOM05D003991 ORTHO05D004883 0.0e+00 1173.7 807 75.6
Manes.02G059600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1170.2 807 75.3
Atru.chr8.642 Acer truncatum HOM05D003991 ORTHO05D004883 0.0e+00 1164.4 806 75.8
CiPaw.03G082800 Carya illinoinensis HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 787 77.5
Duzib133G0226 Durio zibethinus HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 806 75.9
Manes.01G103600 Manihot esculenta HOM05D003991 ORTHO05D004883 0.0e+00 1163.3 807 74.7
TAR622G0714 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1158.7 808 75.6
DCAR_011017 Daucus carota HOM05D003991 ORTHO05D004883 0.0e+00 1152.1 810 75.2
Lsat_1_v5_gn_3_96860 Lactuca sativa HOM05D003991 ORTHO05D004883 0.0e+00 1151.3 808 74.1
MD09G1074500 Malus domestica HOM05D003991 ORTHO05D004883 0.0e+00 1149.4 804 75.2
MELO3C026296.2 Cucumis melo HOM05D003991 ORTHO05D004883 0.0e+00 1146.0 806 73.4
Eucgr.I02064 Eucalyptus grandis HOM05D003991 ORTHO05D004883 0.0e+00 1144.4 798 74.6
Haze_14380 Corylus avellana HOM05D003991 ORTHO05D004883 0.0e+00 1142.1 878 70.6
Potri.004G114600 Populus trichocarpa HOM05D003991 ORTHO05D004883 0.0e+00 1140.2 808 74.5
VMungo1383G3466 Vigna mungo HOM05D003991 ORTHO05D004883 0.0e+00 1139.8 804 74.0
Lalb_Chr10g0092711 Lupinus albus HOM05D003991 ORTHO05D004883 0.0e+00 1138.6 804 75.7
Sed0026923 Sechium edule HOM05D003991 ORTHO05D004883 0.0e+00 1136.3 806 73.0
Nn4g23516 Nelumbo nucifera HOM05D003991 ORTHO05D004883 0.0e+00 1135.9 803 75.0
CsaV3_4G010070 Cucumis sativus L. HOM05D003991 ORTHO05D004883 0.0e+00 1135.6 806 73.0
Cpa.g.sc541.1 Carica papaya HOM05D003991 ORTHO05D004883 0.0e+00 1134.8 762 76.6
Ca_06908_v3 Cicer arietinum L. HOM05D003991 ORTHO05D004883 0.0e+00 1133.6 808 73.5
RcHm_v2.0_Chr2g0164851 Rosa chinensis HOM05D003991 ORTHO05D004883 0.0e+00 1133.2 805 74.3
TPR.G23393 Trifolium pratense HOM05D003991 ORTHO05D004883 0.0e+00 1132.5 804 73.0
Glyma.18G274100 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1129.8 805 73.4
SGA_v2.0_scaffold148G36448 Striga asiatica HOM05D003991 ORTHO05D004883 0.0e+00 1126.7 802 73.6
Lj1g0022443 Lotus japonicus HOM05D003991 ORTHO05D004883 0.0e+00 1126.3 803 73.5
FAN05G5440 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 815 73.3
Phvul.008G026400 Phaseolus vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1125.2 806 73.0
FvH4_6g46350 Fragaria vesca HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 800 74.2
Glyma.08G251400 Glycine max HOM05D003991 ORTHO05D004883 0.0e+00 1124.8 805 73.2
FAN09G2010 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1122.5 800 74.0
Nitab4.5_0000154g0150 Nicotiana tabacum HOM05D003991 ORTHO05D004883 0.0e+00 1121.7 796 74.4
Cc07_g04500 Coffea canephora HOM05D003991 ORTHO05D004883 0.0e+00 1115.1 811 74.1
SalBow1G2342 Salvia bowleyana HOM05D003991 ORTHO05D004883 0.0e+00 1114.8 802 73.8
FAN14G3680 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1112.4 814 72.7
Psat3g203280 Pisum sativum HOM05D003991 ORTHO05D004883 0.0e+00 1111.7 805 71.9
PGR004G0075 Punica granatum HOM05D003991 ORTHO05D004883 0.0e+00 1111.3 801 73.2
ClCG07G016050 Citrullus lanatus HOM05D003991 ORTHO05D004883 0.0e+00 1108.6 852 68.9
MSTRG.2973 Avicennia marina HOM05D003991 ORTHO05D004883 0.0e+00 1108.2 802 73.1
Peaxi162Scf01002g00121 Petunia axillaris HOM05D003991 ORTHO05D004883 0.0e+00 1107.8 800 73.5
Sopen03g010790 Solanum pennellii HOM05D003991 ORTHO05D004883 0.0e+00 1107.0 805 72.0
AL7G51550 Arabidopsis lyrata HOM05D003991 ORTHO05D004883 0.0e+00 1106.7 804 71.6
EL10Ac2g04440 Beta vulgaris HOM05D003991 ORTHO05D004883 0.0e+00 1105.9 816 70.8
HanXRQChr02g0043871 Helianthus annuus HOM05D003991 ORTHO05D004883 0.0e+00 1105.5 798 72.1
AT5G38880 Arabidopsis thaliana HOM05D003991 ORTHO05D004883 0.0e+00 1104.4 804 71.6
Medtr7g016900 Medicago truncatula HOM05D003991 ORTHO05D004883 0.0e+00 1102.4 801 71.7
CAN.G427.3 Capsicum annuum HOM05D003991 ORTHO05D004883 0.0e+00 1100.9 800 72.2
Hund13674 Selenicereus undatus HOM05D003991 ORTHO05D004883 0.0e+00 1099.0 798 70.8
GSVIVG01036544001 Vitis vinifera HOM05D003991 ORTHO05D004883 0.0e+00 1098.2 672 84.1
Carub.0007s3697 Capsella rubella HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 805 71.3
FAN02G3988 Fragaria x ananassa HOM05D003991 ORTHO05D004883 0.0e+00 1094.7 814 71.7
arahy.Tifrunner.gnm1.ann1.YA99EJ Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1093.2 799 72.2
Solyc03g046590.3 Solanum lycopersicum HOM05D003991 ORTHO05D004883 0.0e+00 1092.0 805 72.2
Aa31LG2G3750 Aethionema arabicum HOM05D003991 ORTHO05D004883 0.0e+00 1090.1 793 70.6
MBI17_g07944_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 0.0e+00 1088.9 811 71.4
Thhalv10003675m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 793 71.5
PSO782G2666 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1085.9 810 70.2
THA.LOC104822745 Tarenaya hassleriana HOM05D003991 ORTHO05D004883 0.0e+00 1085.5 814 70.4
TAR374G0063 Trochodendron aralioides HOM05D003991 ORTHO05D004883 0.0e+00 1083.6 766 74.7
Sp2g18130 Schrenkiella parvula HOM05D003991 ORTHO05D004883 0.0e+00 1082.0 794 71.4
PSO063G1675 Papaver somniferum HOM05D003991 ORTHO05D004883 0.0e+00 1080.9 810 70.4
arahy.Tifrunner.gnm1.ann1.T6I3L8 Arachis hypogaea HOM05D003991 ORTHO05D004883 0.0e+00 1079.7 811 71.9
Migut.O00382 Erythranthe guttata HOM05D003991 ORTHO05D004883 5.5e-312 1073.5 801 71.0
Sabra17G0086400 Salix brachista HOM05D003991 ORTHO05D004883 1.1e-311 1072.8 903 65.9
AUR62009479 Chenopodium quinoa HOM05D003991 ORTHO05D004883 2.2e-311 1072.0 808 70.3
ECA246G2054 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.1e-309 1065.4 809 73.1
C07p38530 Brassica napus HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 793 70.5
BolC7t44375H Brassica oleracea HOM05D003991 ORTHO05D004883 2.7e-309 1065.1 793 70.5
BcaC06g33715 Brassica carinata HOM05D003991 ORTHO05D004883 3.5e-309 1064.7 793 70.4
BcaC06g30850 Brassica carinata HOM05D003991 ORTHO05D004883 1.0e-308 1063.1 794 70.5
Thhalv10027646m.g Eutrema salsugineum HOM05D003991 ORTHO05D004883 4.3e-307 1057.7 806 69.2
A06p39740 Brassica napus HOM05D003991 ORTHO05D004883 2.1e-306 1055.4 794 70.0
BraA06t26889Z Brassica rapa HOM05D003991 ORTHO05D004883 2.1e-306 1055.4 794 70.0
Thecc.04G106400 Theobroma cacao HOM05D003991 ORTHO05D004883 1.7e-303 1045.8 646 82.2
AUR62023158 Chenopodium quinoa HOM05D003991 ORTHO05D004883 9.3e-302 1040.0 794 69.8
Gohir.D07G186400 Gossypium hirsutum HOM05D003991 ORTHO05D004883 4.8e-298 1027.7 646 81.4
Gohir.A07G179600 Gossypium hirsutum HOM05D003991 ORTHO05D004883 8.1e-298 1026.9 646 81.1
Nitab4.5_0001434g0090 Nicotiana tabacum HOM05D003991 ORTHO05D004883 3.2e-294 1015.0 806 68.6
Ah.16g101030 Amaranthus hybridus HOM05D003991 ORTHO05D004883 5.5e-294 1014.2 795 69.1
CiPaw.04G052100 Carya illinoinensis HOM05D003991 ORTHO05D004883 3.5e-293 1011.5 819 68.6
Lsat_1_v5_gn_2_90201 Lactuca sativa HOM05D003991 ORTHO05D004883 3.3e-291 1005.0 803 67.1
ATR0605G126 Amborella trichopoda HOM05D003991 ORTHO05D004883 4.3e-291 1004.6 806 65.9
C09p04400 Brassica napus HOM05D003991 ORTHO05D004883 4.2e-286 988.0 795 67.0
unitig_748.g8415 Utricularia gibba HOM05D003991 ORTHO05D004883 2.3e-284 982.2 800 64.8
BraA09t36055Z Brassica rapa HOM05D003991 ORTHO05D004883 7.4e-283 977.2 793 66.1
CSS0050035 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 8.2e-282 973.8 722 76.7
Oeu007082.1 Olea europaea HOM05D003991 ORTHO05D004883 8.2e-282 973.8 848 62.6
BolC9t53370H Brassica oleracea HOM05D003991 ORTHO05D004883 4.1e-281 971.5 793 66.5
A09p04180 Brassica napus HOM05D003991 ORTHO05D004883 5.9e-280 967.6 794 66.9
Aqoxy3G03722 Aquilegia oxysepala HOM05D003991 ORTHO05D004883 2.1e-277 959.1 781 69.1
CDE06G2000 Ceratophyllum demersum HOM05D003991 ORTHO05D004883 4.8e-274 948.0 813 63.5
BcaC04g23813 Brassica carinata HOM05D003991 ORTHO05D004883 2.0e-264 916.0 795 64.3
ECA238G0416 Erigeron canadensis HOM05D003991 ORTHO05D004883 2.0e-259 899.4 799 61.3
HanXRQChr07g0200011 Helianthus annuus HOM05D003991 ORTHO05D004883 1.3e-258 896.7 829 59.5
SEGI_18103 Sequoiadendron giganteum HOM05D003991 ORTHO05D004883 1.2e-253 880.2 815 59.4
HPP92_025879 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-250 870.2 802 57.9
Sc11g0008820 Simmondsia chinensis HOM05D003991 ORTHO05D004883 8.6e-231 804.3 656 67.2
BcaC04g23825 Brassica carinata HOM05D003991 ORTHO05D004883 1.9e-230 803.1 636 67.5
Actinidia26270 Actinidia chinensis HOM05D003991 ORTHO05D004883 2.1e-221 773.1 480 85.4
SMO147G0301 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 6.0e-208 728.4 808 51.0
Pp3c9_9760 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.3e-190 669.5 854 47.0
Pp3c9_9870 Physcomitrium patens HOM05D003991 ORTHO05D004883 3.3e-190 669.5 854 47.0
ECA285G0010 Erigeron canadensis HOM05D003991 ORTHO05D004883 7.9e-184 648.3 619 58.5
Mapoly0016s0130 Marchantia polymorpha HOM05D003991 ORTHO05D004883 1.5e-179 634.0 874 44.2
Pp3c15_7610 Physcomitrium patens HOM05D003991 ORTHO05D004883 2.7e-176 623.2 850 45.1
Pp3c10_8720 Physcomitrium patens HOM05D003991 ORTHO05D004883 1.3e-167 594.3 654 51.5
Zm00001eb311840 Zea mays HOM05D003991 ORTHO05D004883 1.5e-166 590.9 459 66.9
MBI17_g36999_MAGBIO Magnolia biondii HOM05D003991 ORTHO05D004883 1.6e-165 587.4 531 62.0
AagrBONN_evm.TU.Sc2ySwM_344.1887 Anthoceros agrestis HOM05D003991 ORTHO05D004883 1.5e-163 580.9 832 44.2
Os09g0386600 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D004883 3.0e-159 566.6 434 67.7
Zm00001eb099080 Zea mays HOM05D003991 ORTHO05D004883 2.4e-156 557.0 612 53.9
CARHR263670 Cardamine hirsuta HOM05D003991 ORTHO05D004883 1.4e-135 488.0 411 63.3
BcaB04g19523 Brassica carinata HOM05D003991 ORTHO05D004883 7.3e-113 412.5 615 45.5
BcaC04g23815 Brassica carinata HOM05D003991 ORTHO05D004883 7.8e-107 392.5 613 42.9
Dinv33866 Davidia involucrata HOM05D003991 ORTHO05D004883 1.6e-88 331.6 212 81.1
arahy.Tifrunner.gnm1.ann1.VU455X Arachis hypogaea HOM05D003991 ORTHO05D004883 1.5e-78 298.5 208 73.6
arahy.Tifrunner.gnm1.ann1.994D9I Arachis hypogaea HOM05D003991 ORTHO05D004883 1.1e-76 292.4 197 74.6
arahy.Tifrunner.gnm1.ann1.52AFQE Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-76 291.6 197 74.6
arahy.Tifrunner.gnm1.ann1.YE0A4T Arachis hypogaea HOM05D003991 ORTHO05D004883 1.9e-76 291.6 197 74.6
Aa31LG1G6630 Aethionema arabicum HOM05D003991 ORTHO05D004883 2.7e-75 287.7 290 57.6
CBR_g36314 Chara braunii HOM05D003991 ORTHO05D004883 4.6e-75 287.0 768 30.3
Dinv33867 Davidia involucrata HOM05D003991 ORTHO05D004883 2.4e-71 274.6 211 70.1
BcaC04g23820 Brassica carinata HOM05D003991 ORTHO05D004883 3.3e-65 254.2 486 39.7
Sp7g03030 Schrenkiella parvula HOM05D003991 ORTHO05D004883 3.2e-60 237.7 238 55.9
MD09G1075300 Malus domestica HOM05D003991 ORTHO05D004883 5.9e-54 216.9 121 84.3
SMO147G0173 Selaginella moellendorffii HOM05D003991 ORTHO05D004883 7.6e-54 216.5 555 33.3
Dinv33865 Davidia involucrata HOM05D003991 ORTHO05D004883 6.7e-50 203.4 131 79.4
HPP92_006579 Vanilla planifolia HOM05D003991 ORTHO05D004883 2.1e-43 181.8 203 52.7
CSS0000762 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.1e-41 176.0 87 89.7
CSS0038698 Camellia sinensis var. sinensis HOM05D003991 ORTHO05D004883 1.1e-41 176.0 87 89.7
BcaC04g23819 Brassica carinata HOM05D003991 ORTHO05D004883 7.4e-41 173.3 153 61.4
Sc11g0008830 Simmondsia chinensis HOM05D003991 ORTHO05D004883 6.3e-40 170.2 92 85.9
HPP92_006533 Vanilla planifolia HOM05D003991 ORTHO05D004883 9.4e-36 156.4 360 31.7
HPP92_026595 Vanilla planifolia HOM05D003991 ORTHO05D004883 7.7e-30 136.7 130 56.2
SMO147G0397 Selaginella moellendorffii HOM05D003991 ORTHO05D050858 1.7e-29 135.6 141 51.1
BcaC04g23821 Brassica carinata HOM05D003991 ORTHO05D004883 9.7e-25 119.8 89 61.8
arahy.Tifrunner.gnm1.ann1.Q8CATI Arachis hypogaea HOM05D003991 ORTHO05D004883 2.8e-24 118.2 75 81.3
HPP92_026824 Vanilla planifolia HOM05D003991 ORTHO05D004883 3.1e-23 114.8 107 54.2
BcaB04g19526 Brassica carinata HOM05D003991 ORTHO05D004883 2.2e-21 108.6 74 70.3
Medtr7g008870 Medicago truncatula HOM05D003991 ORTHO05D004883 1.5e-20 105.9 71 69.0
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.0e-17 95.5 84 54.8
Cfa002005 Carpinus fangiana HOM05D003991 ORTHO05D009743 3.4e-17 94.7 56 83.9
Dinv33864 Davidia involucrata HOM05D003991 ORTHO05D004883 3.4e-17 94.7 101 55.4
HPP92_028494 Vanilla planifolia HOM05D003991 ORTHO05D004883 1.3e-16 92.8 133 42.9
HPP92_028205 Vanilla planifolia HOM05D003991 ORTHO05D004883 4.8e-16 90.9 112 41.1
Cfa020174 Carpinus fangiana HOM05D003991 ORTHO05D004883 1.6e-14 85.9 54 75.9
Medtr7g051850 Medicago truncatula HOM05D003991 ORTHO05D004883 1.6e-14 85.9 59 64.4
QL05p023649 Quercus lobata HOM05D003991 ORTHO05D004883 1.1e-12 79.7 52 84.6
QL01p030546 Quercus lobata HOM05D003991 ORTHO05D004883 7.2e-12 77.0 54 79.6
Os11g0189900 Oryza sativa ssp. japonica HOM05D003991 ORTHO05D298446 9.5e-12 76.6 77 55.8
QL05p049573 Quercus lobata HOM05D003991 ORTHO05D004883 1.0e-10 73.2 51 78.4
SEGI_36661 Sequoiadendron giganteum HOM05D001164 ORTHO05D018381 2.3e-10 72.0 77 51.9
QL05p049558 Quercus lobata HOM05D003991 ORTHO05D004883 1.2e-09 69.7 48 77.1
HPP92_027976 Vanilla planifolia HOM05D003991 ORTHO05D004883 5.7e-09 67.4 245 28.6
HPP92_027770 Vanilla planifolia HOM05D003991 ORTHO05D432268 4.9e-08 64.3 75 54.7
BcaC04g23826 Brassica carinata HOM05D003991 ORTHO05D004883 5.4e-07 60.8 82 45.1
Oeu049880.1 Olea europaea HOM05D000526 ORTHO05D000956 2.7e-06 58.5 47 66.0


User provided reference genes

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