Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001563 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 9.1e-52 206.5 93 100.0
CSS0038907 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 9.1e-52 206.5 93 100.0
CSS0020125 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.1e-25 119.8 83 73.5
CSS0026204 Camellia sinensis var. sinensis HOM05D002831 ORTHO05D010484 1.1e-25 119.8 83 73.5
vmacro06629 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 1.3e-21 106.3 82 59.8
CiPaw.06G003400 Carya illinoinensis HOM05D002831 ORTHO05D010484 2.7e-19 98.6 82 59.8
arahy.Tifrunner.gnm1.ann1.VWVY78 Arachis hypogaea HOM05D002831 ORTHO05D010484 1.0e-18 96.7 72 62.5
Atru.ctg97_1.17 Acer truncatum HOM05D002831 ORTHO05D010484 1.7e-18 95.9 75 62.7
MD01G1208000 Malus domestica HOM05D002831 ORTHO05D010484 5.1e-18 94.4 53 79.2
Prupe.2G300500 Prunus persica HOM05D002831 ORTHO05D010484 5.1e-18 94.4 53 79.2
Manes.14G022900 Manihot esculenta HOM05D002831 ORTHO05D010484 6.6e-18 94.0 53 79.2
Sabra04G0053100 Salix brachista HOM05D002831 ORTHO05D004341 1.1e-17 93.2 57 75.4
Manes.06G152150 Manihot esculenta HOM05D002831 ORTHO05D010484 1.5e-17 92.8 53 77.4
Potri.004G080000 Populus trichocarpa HOM05D002831 ORTHO05D010484 4.3e-17 91.3 53 77.4
Dinv35249 Davidia involucrata HOM05D002831 ORTHO05D004341 7.3e-17 90.5 59 74.6
Nn1g01626 Nelumbo nucifera HOM05D002831 ORTHO05D010484 1.2e-16 89.7 53 79.2
Potri.017G143300 Populus trichocarpa HOM05D002831 ORTHO05D010484 1.2e-16 89.7 53 75.5
Prupe.7G027400 Prunus persica HOM05D002831 ORTHO05D010484 1.6e-16 89.4 51 74.5
Glyma.20G162551 Glycine max HOM05D002831 ORTHO05D010484 2.1e-16 89.0 53 71.7
CiPaw.06G003200 Carya illinoinensis HOM05D002831 ORTHO05D010484 2.8e-16 88.6 53 73.6
MD07G1278600 Malus domestica HOM05D002831 ORTHO05D010484 1.1e-15 86.7 53 71.7
Thecc.03G183800 Theobroma cacao HOM05D002831 ORTHO05D010484 3.1e-15 85.1 53 69.8
Glyma.09G132600 Glycine max HOM05D002831 ORTHO05D010484 4.0e-15 84.7 53 71.7
Glyma.10G231251 Glycine max HOM05D002831 ORTHO05D010484 4.0e-15 84.7 53 66.0
Glyma.16G179250 Glycine max HOM05D002831 ORTHO05D010484 4.0e-15 84.7 53 71.7
Peaxi162Scf00444g00118 Petunia axillaris HOM05D002831 ORTHO05D010484 5.2e-15 84.3 66 63.6
GSVIVG01028866001 Vitis vinifera HOM05D002831 ORTHO05D010484 5.2e-15 84.3 52 67.3
Lalb_Chr02g0141241 Lupinus albus HOM05D002831 ORTHO05D010484 2.6e-14 82.0 54 70.4
Gohir.D09G177300 Gossypium hirsutum HOM05D002831 ORTHO05D010484 3.4e-14 81.6 53 67.9
Gorai.006G199300 Gossypium raimondii HOM05D002831 ORTHO05D010484 4.4e-14 81.3 53 66.0
Gohir.D11G011200 Gossypium hirsutum HOM05D002831 ORTHO05D010484 5.8e-14 80.9 53 66.0
Gorai.004G117400 Gossypium raimondii HOM05D002831 ORTHO05D004341 5.8e-14 80.9 52 69.2
Cc02_g02410 Coffea canephora HOM05D002831 ORTHO05D010484 1.3e-13 79.7 53 69.8
RcHm_v2.0_Chr1g0378241 Rosa chinensis HOM05D002831 ORTHO05D004341 1.3e-13 79.7 52 67.3
Solyc03g007990.2 Solanum lycopersicum HOM05D002831 ORTHO05D010484 1.7e-13 79.3 53 73.6
ClCG05G008350 Citrullus lanatus HOM05D002831 ORTHO05D010484 2.9e-13 78.6 73 54.8
Nitab4.5_0000084g0420 Nicotiana tabacum HOM05D002831 ORTHO05D010484 2.9e-13 78.6 52 71.2
Cfa016283 Carpinus fangiana HOM05D002831 ORTHO05D004341 4.9e-13 77.8 43 79.1
FAN03G0192 Fragaria x ananassa HOM05D002831 ORTHO05D010484 4.9e-13 77.8 46 71.7
CiPaw.12G018400 Carya illinoinensis HOM05D002831 ORTHO05D010484 6.4e-13 77.4 44 77.3
Gohir.A11G012000 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.1e-12 76.6 53 64.2
Lalb_Chr21g0305231 Lupinus albus HOM05D002831 ORTHO05D010484 1.4e-12 76.3 54 68.5
CAN.G126.13 Capsicum annuum HOM05D002831 ORTHO05D010484 3.2e-12 75.1 53 71.7
Rhsim03G0190700 Rhododendron simsii HOM05D002831 ORTHO05D004341 3.2e-12 75.1 43 76.7
FAN06G3328 Fragaria x ananassa HOM05D002831 ORTHO05D004341 4.2e-12 74.7 44 72.7
Gohir.A12G255400 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.2e-11 73.2 53 60.4
Gohir.D12G256800 Gossypium hirsutum HOM05D002831 ORTHO05D010484 1.2e-11 73.2 53 60.4
Gorai.008G275000 Gossypium raimondii HOM05D002831 ORTHO05D010484 1.2e-11 73.2 53 60.4
Carub.0008s1269 Capsella rubella HOM05D002831 ORTHO05D010484 2.7e-11 72.0 53 62.3
Lalb_Chr03g0034821 Lupinus albus HOM05D002831 ORTHO05D010484 3.5e-11 71.6 50 62.0
Nitab4.5_0003825g0100 Nicotiana tabacum HOM05D002831 ORTHO05D010484 4.6e-11 71.2 52 69.2
vmacro09817 Vaccinium macrocarpon HOM05D002831 ORTHO05D004341 4.6e-11 71.2 48 66.7
VMungo0464G0591 Vigna mungo HOM05D002831 ORTHO05D004341 7.8e-11 70.5 48 66.7
Sabra06G0007800 Salix brachista HOM05D002831 ORTHO05D010484 1.0e-10 70.1 43 72.1
TPR.G7753 Trifolium pratense HOM05D002831 ORTHO05D004341 8.7e-10 67.0 43 69.8
CARHR233120 Cardamine hirsuta HOM05D002831 ORTHO05D010484 1.5e-09 66.2 53 58.5
VMungo0720G1018 Vigna mungo HOM05D002831 ORTHO05D004341 1.9e-09 65.9 43 67.4
CAN.G204.17 Capsicum annuum HOM05D002831 ORTHO05D010484 3.3e-09 65.1 53 64.2
Carub.0007s1529 Capsella rubella HOM05D002831 ORTHO05D010484 5.6e-09 64.3 53 54.7
Lalb_Chr06g0161311 Lupinus albus HOM05D002831 ORTHO05D010484 5.6e-09 64.3 44 70.5
SGA_v2.0_scaffold60G21104 Striga asiatica HOM05D002831 ORTHO05D004341 1.6e-08 62.8 46 60.9
Migut.F00296 Erythranthe guttata HOM05D002831 ORTHO05D004341 2.8e-08 62.0 47 59.6
BolC1t02050H Brassica oleracea HOM05D002831 ORTHO05D010484 4.8e-08 61.2 53 54.7
BraA01t01649Z Brassica rapa HOM05D002831 ORTHO05D010484 1.4e-07 59.7 53 52.8
Hma1.2p1_0274F.1_g110180 Hydrangea macrophylla HOM05D002831 ORTHO05D004341 1.4e-07 59.7 52 55.8
BolC1t02047H Brassica oleracea HOM05D002831 ORTHO05D010484 6.9e-07 57.4 53 54.7
BraA01t01646Z Brassica rapa HOM05D002831 ORTHO05D010484 6.9e-07 57.4 53 54.7
Oeu045362.1 Olea europaea HOM05D002831 ORTHO05D004341 6.9e-07 57.4 39 66.7
Ah.07g206590 Amaranthus hybridus HOM05D002831 ORTHO05D004341 9.0e-07 57.0 45 57.8
Migut.F01087 Erythranthe guttata HOM05D002831 ORTHO05D004341 1.5e-06 56.2 48 56.2
Ah.13g069160 Amaranthus hybridus HOM05D004727 ORTHO05D005788 2.0e-06 55.8 53 52.8
Nitab4.5_0000248g0010 Nicotiana tabacum HOM05D002831 ORTHO05D004341 3.4e-06 55.1 44 68.2
Sabra05G0003700 Salix brachista HOM05D000273 ORTHO05D000198 3.4e-06 55.1 37 67.6


User provided reference genes

Program Settings