Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001557 Camellia sinensis var. sinensis HOM05D005674 ORTHO05D007015 9.1e-44 182.2 458 100.0
Dinv12372 Davidia involucrata HOM05D005674 ORTHO05D007015 2.1e-32 144.4 80 92.5
Actinidia00858 Actinidia chinensis HOM05D005674 ORTHO05D007015 3.0e-31 140.6 84 86.9
Rhsim04G0075800 Rhododendron simsii HOM05D005674 ORTHO05D007015 4.8e-29 133.3 84 78.6
Cfa012588 Carpinus fangiana HOM05D005674 ORTHO05D007015 3.1e-28 130.6 82 79.3
Dinv11955 Davidia involucrata HOM05D005674 ORTHO05D007015 1.2e-27 128.6 75 89.3
QL08p042254 Quercus lobata HOM05D005674 ORTHO05D007015 1.6e-27 128.3 81 80.2
Hma1.2p1_0067F.1_g036940 Hydrangea macrophylla HOM05D005674 ORTHO05D007015 2.0e-27 127.9 82 78.0
GSVIVG01024415001 Vitis vinifera HOM05D005674 ORTHO05D007015 7.7e-27 125.9 71 84.5
CiPaw.03G192600 Carya illinoinensis HOM05D005674 ORTHO05D007015 2.9e-26 124.0 81 74.1
ClCG07G002660 Citrullus lanatus HOM05D005674 ORTHO05D007015 5.0e-26 123.2 82 73.2
DCAR_018956 Daucus carota HOM05D005674 ORTHO05D007015 1.1e-25 122.1 83 72.3
Sc04g0009990 Simmondsia chinensis HOM05D005674 ORTHO05D007015 1.5e-25 121.7 82 73.2
Duzib160G0406 Durio zibethinus HOM05D005674 ORTHO05D007015 2.5e-25 120.9 83 74.7
Thecc.01G153300 Theobroma cacao HOM05D005674 ORTHO05D007015 7.2e-25 119.4 80 76.2
TAR627G1060 Trochodendron aralioides HOM05D005674 ORTHO05D007015 7.2e-25 119.4 78 76.9
Gorai.011G295800 Gossypium raimondii HOM05D005674 ORTHO05D007015 9.5e-25 119.0 83 71.1
Lj1P677T28 Lonicera japonica HOM05D005674 ORTHO05D007015 9.5e-25 119.0 83 71.1
Manes.08G068200 Manihot esculenta HOM05D005674 ORTHO05D007015 9.5e-25 119.0 78 74.4
Gohir.D10G254800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.6e-24 118.2 83 71.1
Gorai.013G183800 Gossypium raimondii HOM05D005674 ORTHO05D007015 1.6e-24 118.2 82 72.0
Ciclev10008244m.g Citrus clementina HOM05D005674 ORTHO05D007015 2.1e-24 117.9 82 69.5
Gohir.D13G161800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 3.6e-24 117.1 81 72.8
PGSC0003DMG401020415 Solanum tuberosum HOM05D005674 ORTHO05D007015 6.1e-24 116.3 82 65.9
CAN.G1360.18 Capsicum annuum HOM05D005674 ORTHO05D007015 8.0e-24 115.9 80 67.5
Cpa.g.sc90.66 Carica papaya HOM05D005674 ORTHO05D007015 1.0e-23 115.5 82 69.5
Gohir.A10G242800 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.0e-23 115.5 82 70.7
Manes.09G079700 Manihot esculenta HOM05D005674 ORTHO05D007015 1.0e-23 115.5 81 71.6
CANSAT54G2399 Cannabis sativa HOM05D005674 ORTHO05D007015 1.8e-23 114.8 78 71.8
Solyc07g055220.3 Solanum lycopersicum HOM05D005674 ORTHO05D007015 1.8e-23 114.8 80 66.2
Sopen07g027000 Solanum pennellii HOM05D005674 ORTHO05D007015 1.8e-23 114.8 80 66.2
VMungo1309G1849 Vigna mungo HOM05D005674 ORTHO05D007015 2.3e-23 114.4 80 70.0
Atru.chr7.2335 Acer truncatum HOM05D005674 ORTHO05D007015 3.0e-23 114.0 83 66.3
CsaV3_4G030900 Cucumis sativus L. HOM05D005674 ORTHO05D007015 3.0e-23 114.0 80 70.0
Solyc02g086230.2 Solanum lycopersicum HOM05D005674 ORTHO05D007015 3.0e-23 114.0 84 65.5
Sopen02g030910 Solanum pennellii HOM05D005674 ORTHO05D007015 3.0e-23 114.0 84 65.5
PGSC0003DMG400026386 Solanum tuberosum HOM05D005674 ORTHO05D007015 4.0e-23 113.6 84 65.5
Lalb_Chr01g0007701 Lupinus albus HOM05D005674 ORTHO05D007015 5.2e-23 113.2 82 67.1
Prupe.4G280300 Prunus persica HOM05D005674 ORTHO05D007015 6.8e-23 112.8 69 79.7
CAN.G625.40 Capsicum annuum HOM05D005674 ORTHO05D007015 2.0e-22 111.3 81 67.9
Sed0024338 Sechium edule HOM05D005674 ORTHO05D007015 3.4e-22 110.5 80 66.2
Sed0008626 Sechium edule HOM05D005674 ORTHO05D007015 4.4e-22 110.2 79 68.4
MD07G1055100 Malus domestica HOM05D005674 ORTHO05D007015 5.7e-22 109.8 71 74.6
Thhalv10001221m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 9.8e-22 109.0 68 76.5
MD15G1427800 Malus domestica HOM05D005674 ORTHO05D007015 1.3e-21 108.6 69 75.4
Sabra06G0005200 Salix brachista HOM05D005674 ORTHO05D007015 1.7e-21 108.2 71 73.2
Phvul.009G126100 Phaseolus vulgaris HOM05D005674 ORTHO05D007015 2.8e-21 107.5 80 66.2
Potri.006G006500 Populus trichocarpa HOM05D005674 ORTHO05D007015 3.7e-21 107.1 71 71.8
Hund00863 Selenicereus undatus HOM05D005674 ORTHO05D007015 4.9e-21 106.7 80 63.8
TWI12G0566 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 4.9e-21 106.7 82 65.9
TWI31G0445 Tripterygium wilfordii HOM05D005674 ORTHO05D007015 1.1e-20 105.5 80 66.2
Gohir.A13G157000 Gossypium hirsutum HOM05D005674 ORTHO05D007015 1.4e-20 105.1 80 65.0
Nitab4.5_0007923g0040 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.4e-20 105.1 84 63.1
Sp2g11490 Schrenkiella parvula HOM05D005674 ORTHO05D007015 1.4e-20 105.1 66 77.3
Nitab4.5_0000249g0090 Nicotiana tabacum HOM05D005674 ORTHO05D007015 1.8e-20 104.8 80 66.2
arahy.Tifrunner.gnm1.ann1.U482D3 Arachis hypogaea HOM05D005674 ORTHO05D007015 2.4e-20 104.4 82 61.0
arahy.Tifrunner.gnm1.ann1.MAGV51 Arachis hypogaea HOM05D005674 ORTHO05D007015 4.1e-20 103.6 82 59.8
Cc05_g08520 Coffea canephora HOM05D005674 ORTHO05D007015 4.1e-20 103.6 84 59.5
Duzib116G0841 Durio zibethinus HOM05D005674 ORTHO05D007015 4.1e-20 103.6 71 69.0
Ca_14577_v3 Cicer arietinum L. HOM05D005674 ORTHO05D007015 5.4e-20 103.2 79 63.3
Psat0s443g0080 Pisum sativum HOM05D005674 ORTHO05D007015 5.4e-20 103.2 79 62.0
Prupe.3G114500 Prunus persica HOM05D005674 ORTHO05D007015 7.0e-20 102.8 79 64.6
RcHm_v2.0_Chr2g0130841 Rosa chinensis HOM05D005674 ORTHO05D007015 7.0e-20 102.8 79 67.1
SalBow4G2062 Salvia bowleyana HOM05D005674 ORTHO05D007015 1.2e-19 102.1 71 69.0
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 1.6e-19 101.7 66 71.2
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 1.6e-19 101.7 66 71.2
A02p30210 Brassica napus HOM05D005674 ORTHO05D007015 2.0e-19 101.3 66 72.7
BraA02t08037Z Brassica rapa HOM05D005674 ORTHO05D007015 2.0e-19 101.3 66 72.7
AT5G46680 Arabidopsis thaliana HOM05D005674 ORTHO05D007015 2.7e-19 100.9 66 71.2
AUR62040438 Chenopodium quinoa HOM05D005674 ORTHO05D007015 2.7e-19 100.9 73 65.8
FvH4_6g27690 Fragaria vesca HOM05D005674 ORTHO05D007015 2.7e-19 100.9 69 72.5
AUR62024049 Chenopodium quinoa HOM05D005674 ORTHO05D007015 3.5e-19 100.5 74 64.9
AL8G11670 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 4.5e-19 100.1 66 71.2
arahy.Tifrunner.gnm1.ann1.I145LQ Arachis hypogaea HOM05D005674 ORTHO05D007015 4.5e-19 100.1 76 64.5
BcaC03g16871 Brassica carinata HOM05D005674 ORTHO05D007015 4.5e-19 100.1 66 69.7
ECA240G0139 Erigeron canadensis HOM05D005674 ORTHO05D007015 4.5e-19 100.1 82 58.5
TPR.G14745 Trifolium pratense HOM05D005674 ORTHO05D007015 5.9e-19 99.8 71 64.8
CARHR174820 Cardamine hirsuta HOM05D005674 ORTHO05D007015 7.8e-19 99.4 66 71.2
CAN.G1360.17 Capsicum annuum HOM05D001556 ORTHO05D001505 1.3e-18 98.6 61 70.5
MBI15_g37633_MAGBIO Magnolia biondii HOM05D000146 ORTHO05D000178 1.3e-18 98.6 77 63.6
TPR.G15161 Trifolium pratense HOM05D005674 ORTHO05D007015 1.3e-18 98.6 71 64.8
SGA_v2.0_scaffold18G08491 Striga asiatica HOM05D005674 ORTHO05D007015 1.7e-18 98.2 67 65.7
arahy.Tifrunner.gnm1.ann1.JH6JIJ Arachis hypogaea HOM05D005674 ORTHO05D007015 2.3e-18 97.8 77 62.3
Migut.F00129 Erythranthe guttata HOM05D005674 ORTHO05D007015 2.3e-18 97.8 71 64.8
MELO3C020050.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.0e-18 96.7 71 66.2
Glyma.03G075500 Glycine max HOM05D005674 ORTHO05D007015 5.0e-18 96.7 77 62.3
HanXRQChr13g0421081 Helianthus annuus HOM05D005674 ORTHO05D007015 1.1e-17 95.5 76 61.8
PGR142G3640 Punica granatum HOM05D005674 ORTHO05D007015 1.5e-17 95.1 78 61.5
Medtr7g024140 Medicago truncatula HOM05D005674 ORTHO05D007015 1.9e-17 94.7 78 57.7
Lsat_1_v5_gn_3_116841 Lactuca sativa HOM05D005674 ORTHO05D007015 2.5e-17 94.4 81 55.6
Aqoxy3G02039 Aquilegia oxysepala HOM05D005674 ORTHO05D007015 3.3e-17 94.0 67 67.2
Nitab4.5_0000753g0050 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.3e-17 94.0 80 61.2
Lj3g0025693 Lotus japonicus HOM05D005674 ORTHO05D007015 4.3e-17 93.6 65 66.2
MELO3C033809.2 Cucumis melo HOM05D005674 ORTHO05D007015 5.6e-17 93.2 70 68.6
Eucgr.K01145 Eucalyptus grandis HOM05D005674 ORTHO05D007015 9.5e-17 92.4 71 66.2
CsaV3_5G005440 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.1e-16 91.3 77 62.3
PSO063G6562 Papaver somniferum HOM05D005674 ORTHO05D007015 2.8e-16 90.9 71 59.2
BcaC06g33618 Brassica carinata HOM05D005674 ORTHO05D007015 6.1e-16 89.7 79 58.2
CARHR224650 Cardamine hirsuta HOM05D005674 ORTHO05D007015 8.0e-16 89.4 76 61.8
PSO782G5737 Papaver somniferum HOM05D005674 ORTHO05D007015 8.0e-16 89.4 71 57.7
Aa31LG10G3050 Aethionema arabicum HOM05D005674 ORTHO05D007015 1.0e-15 89.0 77 61.0
Nn2g12528 Nelumbo nucifera HOM05D005674 ORTHO05D007015 1.0e-15 89.0 80 60.0
BolC7t45434H Brassica oleracea HOM05D005674 ORTHO05D007015 2.3e-15 87.8 78 57.7
Nitab4.5_0007990g0010 Nicotiana tabacum HOM05D005674 ORTHO05D007015 3.0e-15 87.4 76 60.5
COL.COLO4_33609 Corchorus olitorius HOM05D005674 ORTHO05D007015 5.2e-15 86.7 80 57.5
Thhalv10025145m.g Eutrema salsugineum HOM05D005674 ORTHO05D007015 5.2e-15 86.7 79 55.7
TAR626G0412 Trochodendron aralioides HOM05D005674 ORTHO05D007015 6.8e-15 86.3 82 62.2
Peaxi162Scf00888g00007 Petunia axillaris HOM05D005674 ORTHO05D007015 1.2e-14 85.5 78 55.1
A03p50860 Brassica napus HOM05D005674 ORTHO05D007015 2.6e-14 84.3 77 57.1
BraA03t14173Z Brassica rapa HOM05D005674 ORTHO05D007015 2.6e-14 84.3 77 57.1
Carub.0008s0124 Capsella rubella HOM05D005674 ORTHO05D007015 3.4e-14 84.0 77 58.4
THA.LOC104806715 Tarenaya hassleriana HOM05D005674 ORTHO05D007015 4.4e-14 83.6 76 53.9
C07p49250 Brassica napus HOM05D005674 ORTHO05D007015 7.5e-14 82.8 74 58.1
HPP92_017208 Vanilla planifolia HOM05D005674 ORTHO05D007015 7.5e-14 82.8 74 52.7
Os02g0793200 Oryza sativa ssp. japonica HOM05D005674 ORTHO05D007015 9.8e-14 82.4 74 54.1
Aa31LG6G670 Aethionema arabicum HOM05D005674 ORTHO05D007015 2.9e-13 80.9 76 56.6
AL7G36590 Arabidopsis lyrata HOM05D005674 ORTHO05D007015 3.7e-13 80.5 72 58.3
Sp7g16190 Schrenkiella parvula HOM05D005674 ORTHO05D007015 3.7e-13 80.5 73 57.5
Carub.0007s2342 Capsella rubella HOM05D005674 ORTHO05D007015 6.4e-13 79.7 73 56.2
Psat5g177920 Pisum sativum HOM05D005674 ORTHO05D007015 6.4e-13 79.7 54 70.4
ATR1132G073 Amborella trichopoda HOM05D005674 ORTHO05D007015 1.9e-12 78.2 48 77.1
Zm00001eb201010 Zea mays HOM05D005674 ORTHO05D007015 4.1e-12 77.0 71 50.7
CsaV3_5G013070 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.7e-11 74.3 52 63.5
CsaV3_UNG017130 Cucumis sativus L. HOM05D005674 ORTHO05D007015 2.7e-11 74.3 52 63.5
FAN23G2012 Fragaria x ananassa HOM05D005674 ORTHO05D007015 7.8e-11 72.8 50 74.0
BcaC06g31458 Brassica carinata HOM05D005674 ORTHO05D007015 1.1e-09 68.9 80 48.8
CAN.G1034.39 Capsicum annuum HOM05D005674 ORTHO05D033540 7.3e-09 66.2 46 63.0
MELO3C033079.2 Cucumis melo HOM05D005674 ORTHO05D031076 2.8e-08 64.3 47 63.8
Lalb_Chr01g0013691 Lupinus albus HOM05D001514 ORTHO05D007015 1.4e-07 62.0 45 66.7
Aqoxy5G02826 Aquilegia oxysepala HOM05D000017 ORTHO05D000013 2.0e-06 58.2 54 48.1


User provided reference genes

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