Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001538 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.1e-195 686.4 333 100.0
CSS0024637 Camellia sinensis var. sinensis HOM05D004519 ORTHO05D006283 1.1e-195 686.4 333 100.0
Dinv29004 Davidia involucrata HOM05D004519 ORTHO05D006283 2.4e-171 605.5 333 86.5
Dinv25262 Davidia involucrata HOM05D004519 ORTHO05D006283 1.8e-166 589.3 333 84.4
Hma1.2p1_1569F.1_g291200 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 2.2e-164 582.4 333 82.3
GSVIVG01013060001 Vitis vinifera HOM05D004519 ORTHO05D006283 5.1e-161 571.2 333 81.1
Rhsim11G0021900 Rhododendron simsii HOM05D004519 ORTHO05D006283 1.9e-160 569.3 348 79.9
vmacro00276 Vaccinium macrocarpon HOM05D004519 ORTHO05D006283 7.3e-160 567.4 329 82.1
Eucgr.E00228 Eucalyptus grandis HOM05D004519 ORTHO05D006283 9.5e-160 567.0 332 78.0
Ciclev10001047m.g Citrus clementina HOM05D004519 ORTHO05D006283 3.6e-159 565.1 331 78.2
Cfa012505 Carpinus fangiana HOM05D004519 ORTHO05D006283 4.7e-159 564.7 333 79.3
CANSAT01G0127 Cannabis sativa HOM05D004519 ORTHO05D006283 1.4e-158 563.1 334 78.7
Nn3g19385 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.4e-158 563.1 333 76.6
RcHm_v2.0_Chr7g0211781 Rosa chinensis HOM05D004519 ORTHO05D006283 1.4e-158 563.1 333 78.1
Oeu027094.2 Olea europaea HOM05D004519 ORTHO05D006283 1.8e-158 562.8 333 80.2
FAN04G1490 Fragaria x ananassa HOM05D004519 ORTHO05D006283 3.1e-158 562.0 331 77.6
FAN13G3061 Fragaria x ananassa HOM05D004519 ORTHO05D006283 4.0e-158 561.6 331 77.9
FvH4_5g23060 Fragaria vesca HOM05D004519 ORTHO05D006283 1.5e-157 559.7 331 77.6
FAN18G3814 Fragaria x ananassa HOM05D004519 ORTHO05D006283 1.5e-157 559.7 331 77.6
CiPaw.12G068400 Carya illinoinensis HOM05D004519 ORTHO05D006283 2.0e-157 559.3 332 78.9
CiPaw.11G098500 Carya illinoinensis HOM05D004519 ORTHO05D006283 3.4e-157 558.5 332 78.6
PGR042G1943 Punica granatum HOM05D004519 ORTHO05D006283 6.4e-156 554.3 333 76.6
Potri.001G136600 Populus trichocarpa HOM05D004519 ORTHO05D006283 8.4e-156 553.9 333 76.9
MD06G1026700 Malus domestica HOM05D004519 ORTHO05D006283 1.1e-155 553.5 333 76.6
CAN.G726.25 Capsicum annuum HOM05D004519 ORTHO05D006283 1.4e-155 553.1 333 78.1
Nitab4.5_0000529g0120 Nicotiana tabacum HOM05D004519 ORTHO05D006283 1.9e-155 552.7 332 78.3
Manes.17G018849 Manihot esculenta HOM05D004519 ORTHO05D006283 3.2e-155 552.0 333 77.5
TAR629G2035 Trochodendron aralioides HOM05D004519 ORTHO05D006283 4.2e-155 551.6 333 78.1
HanXRQChr03g0083251 Helianthus annuus HOM05D004519 ORTHO05D006283 5.4e-155 551.2 330 79.1
Sc01g0007150 Simmondsia chinensis HOM05D004519 ORTHO05D006283 5.4e-155 551.2 333 78.4
Cc08_g03490 Coffea canephora HOM05D004519 ORTHO05D006283 1.6e-154 549.7 341 78.6
Nn1g00218 Nelumbo nucifera HOM05D004519 ORTHO05D006283 1.6e-154 549.7 333 75.4
FAN18G1908 Fragaria x ananassa HOM05D004519 ORTHO05D006283 6.0e-154 547.7 347 73.8
Gorai.004G182200 Gossypium raimondii HOM05D004519 ORTHO05D006283 6.0e-154 547.7 333 77.8
MD16G1279400 Malus domestica HOM05D004519 ORTHO05D006283 2.3e-153 545.8 333 75.7
Solyc08g076470.4 Solanum lycopersicum HOM05D004519 ORTHO05D006283 1.5e-152 543.1 333 76.6
Sopen08g025050 Solanum pennellii HOM05D004519 ORTHO05D006283 1.5e-152 543.1 333 76.6
CsaV3_3G048840 Cucumis sativus L. HOM05D004519 ORTHO05D006283 9.6e-152 540.4 331 76.1
HanXRQChr13g0414231 Helianthus annuus HOM05D004519 ORTHO05D006283 1.2e-151 540.0 329 77.8
PSO782G3212 Papaver somniferum HOM05D004519 ORTHO05D006283 6.2e-151 537.7 333 74.8
PSO063G4347 Papaver somniferum HOM05D004519 ORTHO05D006283 8.1e-151 537.3 333 74.8
MSTRG.24848 Avicennia marina HOM05D004519 ORTHO05D006283 2.4e-150 535.8 331 75.8
Gorai.007G033500 Gossypium raimondii HOM05D004519 ORTHO05D006283 2.4e-150 535.8 333 76.9
SGA_v2.0_scaffold198G41070 Striga asiatica HOM05D004519 ORTHO05D006283 2.4e-150 535.8 330 75.8
THA.LOC104812759 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 3.1e-150 535.4 332 74.7
Aqoxy3G02176 Aquilegia oxysepala HOM05D004519 ORTHO05D006283 6.9e-150 534.3 333 73.6
Migut.E00743 Erythranthe guttata HOM05D004519 ORTHO05D006283 1.2e-149 533.5 330 76.1
Gohir.A11G028600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.8e-149 531.2 333 76.3
Gohir.D11G030600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.8e-149 531.2 333 76.3
MELO3C003440.2 Cucumis melo HOM05D004519 ORTHO05D006283 1.7e-148 529.6 331 75.5
THA.LOC104814413 Tarenaya hassleriana HOM05D004519 ORTHO05D006283 2.2e-148 529.3 331 74.0
Duzib205G0301 Durio zibethinus HOM05D004519 ORTHO05D006283 8.4e-148 527.3 326 76.7
ECA240G3299 Erigeron canadensis HOM05D004519 ORTHO05D006283 1.1e-147 526.9 330 74.8
Lsat_1_v5_gn_6_80100 Lactuca sativa HOM05D004519 ORTHO05D006283 1.1e-147 526.9 330 73.9
Sed0022223 Sechium edule HOM05D004519 ORTHO05D006283 1.1e-147 526.9 331 74.0
Gohir.A03G000032 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.4e-147 524.6 333 74.8
Lj4g0001331 Lotus japonicus HOM05D004519 ORTHO05D006283 7.1e-147 524.2 333 73.0
Gohir.D03G176300 Gossypium hirsutum HOM05D004519 ORTHO05D006283 1.6e-146 523.1 333 74.5
Gorai.003G185500 Gossypium raimondii HOM05D004519 ORTHO05D006283 1.6e-146 523.1 333 74.5
Lalb_Chr16g0381061 Lupinus albus HOM05D004519 ORTHO05D006283 6.0e-146 521.2 333 72.4
DCAR_008221 Daucus carota HOM05D004519 ORTHO05D006283 7.8e-146 520.8 365 69.9
Sabra01G0105700 Salix brachista HOM05D004519 ORTHO05D006283 2.3e-145 519.2 380 66.8
ATR0829G164 Amborella trichopoda HOM05D004519 ORTHO05D006283 3.0e-145 518.8 333 73.6
VMungo1215G0394 Vigna mungo HOM05D004519 ORTHO05D006283 1.5e-144 516.5 333 73.0
Lalb_Chr09g0325481 Lupinus albus HOM05D004519 ORTHO05D006283 7.3e-144 514.2 333 73.0
Aa31LG2G13810 Aethionema arabicum HOM05D004519 ORTHO05D006283 9.6e-144 513.8 333 71.8
MBI04_g32203_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 9.6e-144 513.8 360 68.6
Glyma.01G014200 Glycine max HOM05D004519 ORTHO05D006283 1.3e-143 513.5 333 72.7
Glyma.09G207900 Glycine max HOM05D004519 ORTHO05D006283 2.1e-143 512.7 333 72.4
SEGI_02196 Sequoiadendron giganteum HOM05D004519 ORTHO05D006283 2.1e-143 512.7 331 72.5
Medtr5g029230 Medicago truncatula HOM05D004519 ORTHO05D006283 2.8e-143 512.3 333 73.0
Psat2g139000 Pisum sativum HOM05D004519 ORTHO05D006283 2.8e-143 512.3 333 72.4
Zm00001eb025080 Zea mays HOM05D004519 ORTHO05D006283 1.4e-142 510.0 333 71.2
BcaC05g27905 Brassica carinata HOM05D004519 ORTHO05D006283 1.8e-142 509.6 333 70.3
Thhalv10007540m.g Eutrema salsugineum HOM05D004519 ORTHO05D006283 3.1e-142 508.8 333 70.3
A05p25130 Brassica napus HOM05D004519 ORTHO05D006283 5.3e-142 508.1 333 70.0
BraA05t21393Z Brassica rapa HOM05D004519 ORTHO05D006283 5.3e-142 508.1 333 70.0
BcaB03g13753 Brassica carinata HOM05D004519 ORTHO05D006283 9.0e-142 507.3 333 70.0
TPR.G19434 Trifolium pratense HOM05D004519 ORTHO05D006283 9.0e-142 507.3 333 72.4
Zm00001eb224960 Zea mays HOM05D004519 ORTHO05D006283 9.0e-142 507.3 333 70.3
Os10g0577900 Oryza sativa ssp. japonica HOM05D004519 ORTHO05D006283 1.5e-141 506.5 333 69.4
Sp1g27880 Schrenkiella parvula HOM05D004519 ORTHO05D006283 2.0e-141 506.1 333 70.3
Carub.0001s3053 Capsella rubella HOM05D004519 ORTHO05D006283 4.5e-141 505.0 333 69.7
BcaC05g27251 Brassica carinata HOM05D004519 ORTHO05D006283 1.7e-140 503.1 333 70.0
ClCG09G011630 Citrullus lanatus HOM05D004519 ORTHO05D006283 1.7e-140 503.1 349 69.9
AL1G46330 Arabidopsis lyrata HOM05D004519 ORTHO05D006283 2.2e-140 502.7 333 69.1
AT1G32200 Arabidopsis thaliana HOM05D004519 ORTHO05D006283 2.2e-140 502.7 333 69.4
C05p31600 Brassica napus HOM05D004519 ORTHO05D006283 2.2e-140 502.7 333 70.0
BolC5t31883H Brassica oleracea HOM05D004519 ORTHO05D006283 2.2e-140 502.7 333 70.0
Phvul.002G136600 Phaseolus vulgaris HOM05D004519 ORTHO05D006283 6.4e-140 501.1 333 70.0
BcaB07g32892 Brassica carinata HOM05D004519 ORTHO05D006283 8.4e-140 500.7 333 69.4
Ca_25177_v3 Cicer arietinum L. HOM05D004519 ORTHO05D006283 1.1e-139 500.4 323 73.7
A09p34000 Brassica napus HOM05D004519 ORTHO05D006283 1.4e-139 500.0 333 69.7
Nitab4.5_0012493g0010 Nicotiana tabacum HOM05D004519 ORTHO05D006283 2.7e-138 495.7 309 77.0
CARHR031570 Cardamine hirsuta HOM05D004519 ORTHO05D006283 3.5e-138 495.4 333 68.8
QL12p001672 Quercus lobata HOM05D004519 ORTHO05D006283 3.5e-138 495.4 455 55.2
AUR62018641 Chenopodium quinoa HOM05D004519 ORTHO05D006283 4.6e-138 495.0 331 71.3
BcaB04g17996 Brassica carinata HOM05D004519 ORTHO05D006283 6.0e-138 494.6 332 69.0
BolC8t47999H Brassica oleracea HOM05D004519 ORTHO05D006283 7.9e-138 494.2 332 68.7
BcaC07g37628 Brassica carinata HOM05D004519 ORTHO05D006283 1.3e-137 493.4 332 68.7
A08p09320 Brassica napus HOM05D004519 ORTHO05D006283 1.8e-137 493.0 332 68.7
BraA08t32930Z Brassica rapa HOM05D004519 ORTHO05D006283 1.8e-137 493.0 332 68.7
AUR62007353 Chenopodium quinoa HOM05D004519 ORTHO05D006283 6.7e-137 491.1 353 67.4
Prupe.5G027200 Prunus persica HOM05D004519 ORTHO05D006283 6.2e-135 484.6 333 68.5
Haze_08164 Corylus avellana HOM05D004519 ORTHO05D006283 5.3e-134 481.5 318 73.0
CDE12G0245 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 2.6e-133 479.2 309 72.2
Lj2A231G41 Lonicera japonica HOM05D004519 ORTHO05D006283 9.9e-133 477.2 360 67.2
Thecc.03G310400 Theobroma cacao HOM05D004519 ORTHO05D006283 4.2e-131 471.9 333 69.4
arahy.Tifrunner.gnm1.ann1.BI8WMI Arachis hypogaea HOM05D004519 ORTHO05D006283 6.7e-129 464.5 311 71.1
arahy.Tifrunner.gnm1.ann1.D9NVDI Arachis hypogaea HOM05D004519 ORTHO05D006283 6.7e-129 464.5 311 71.1
Duzib068G1409 Durio zibethinus HOM05D004519 ORTHO05D006283 6.2e-127 458.0 333 69.1
C05p39140 Brassica napus HOM05D004519 ORTHO05D006283 1.4e-126 456.8 293 70.6
BraA09t38946Z Brassica rapa HOM05D004519 ORTHO05D006283 3.4e-125 452.2 333 65.5
unitig_32.g10899 Utricularia gibba HOM05D004519 ORTHO05D006283 5.8e-125 451.4 288 72.9
Mapoly0045s0098 Marchantia polymorpha HOM05D004519 ORTHO05D006283 3.8e-124 448.7 331 60.7
Gohir.D08G174500 Gossypium hirsutum HOM05D004519 ORTHO05D006283 6.5e-124 448.0 262 79.0
Peaxi162Scf00170g00818 Petunia axillaris HOM05D004519 ORTHO05D006283 6.5e-124 448.0 333 66.1
CDE04G2515 Ceratophyllum demersum HOM05D004519 ORTHO05D006283 3.2e-123 445.7 313 67.4
Gohir.A08G153600 Gossypium hirsutum HOM05D004519 ORTHO05D006283 5.5e-123 444.9 262 78.6
EL10Ac5g12013 Beta vulgaris HOM05D004519 ORTHO05D006283 2.5e-120 436.0 350 60.0
Pp3c7_2970 Physcomitrium patens HOM05D004519 ORTHO05D006283 4.1e-118 428.7 331 56.8
HanXRQChr06g0172791 Helianthus annuus HOM05D004519 ORTHO05D006283 6.9e-118 427.9 331 64.4
HPP92_020895 Vanilla planifolia HOM05D004519 ORTHO05D006283 2.0e-117 426.4 260 75.8
SMO244G0022 Selaginella moellendorffii HOM05D004519 ORTHO05D006283 2.2e-116 422.9 331 58.6
FAN08G3243 Fragaria x ananassa HOM05D004519 ORTHO05D006283 2.9e-116 422.5 288 68.8
Actinidia01317 Actinidia chinensis HOM05D004519 ORTHO05D006283 4.5e-109 398.7 210 89.5
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.0e-108 397.5 333 56.8
EL10Ac5g12011 Beta vulgaris HOM05D004519 ORTHO05D006283 6.5e-108 394.8 350 56.0
DCAR_004271 Daucus carota HOM05D004519 ORTHO05D006283 8.5e-108 394.4 248 74.6
Eucgr.E01634 Eucalyptus grandis HOM05D004519 ORTHO05D006283 1.1e-107 394.0 249 73.1
Haze_08160 Corylus avellana HOM05D004519 ORTHO05D006283 7.9e-106 387.9 255 72.9
Cpa.g.sc208.3 Carica papaya HOM05D004519 ORTHO05D006283 8.2e-103 377.9 217 79.7
CBR_g4494 Chara braunii HOM05D004519 ORTHO05D006283 1.5e-101 373.6 344 52.9
Atru.chr6.1525 Acer truncatum HOM05D004519 ORTHO05D006283 3.1e-94 349.4 206 80.1
Cre02.g143000 Chlamydomonas reinhardtii HOM05D004519 ORTHO05D006283 2.9e-76 289.7 311 46.0
Actinidia29340 Actinidia chinensis HOM05D004519 ORTHO05D006283 7.5e-72 275.0 163 81.6
PRCOL_00006772 Prasinoderma coloniale HOM05D004519 ORTHO05D006283 2.6e-64 250.0 300 42.3
MCO03G317 Micromonas commoda HOM05D004519 ORTHO05D006283 1.6e-61 240.7 297 44.1
Hma1.2p1_3246F.1_g334370 Hydrangea macrophylla HOM05D004519 ORTHO05D006283 8.3e-55 218.4 176 63.1
MBI15_g25773_MAGBIO Magnolia biondii HOM05D004519 ORTHO05D006283 2.9e-39 166.8 98 75.5
Eucgr.A01818 Eucalyptus grandis HOM05D004519 ORTHO05D006283 4.6e-37 159.5 83 88.0
Cpa.g.sc208.5 Carica papaya HOM05D004519 ORTHO05D006283 2.8e-26 123.6 73 76.7
HanXRQChr16g0500211 Helianthus annuus HOM05D004519 ORTHO05D006283 4.8e-26 122.9 77 74.0
arahy.Tifrunner.gnm1.ann1.LG4SFI Arachis hypogaea HOM05D000755 ORTHO05D017477 7.9e-21 105.5 108 51.9
Haze_20066 Corylus avellana HOM05D004519 ORTHO05D007437 3.7e-18 96.7 95 51.6
Actinidia01316 Actinidia chinensis HOM05D004519 ORTHO05D006283 1.8e-17 94.4 62 71.0
PGSC0003DMG401014796 Solanum tuberosum HOM05D004519 ORTHO05D006283 4.0e-17 93.2 93 50.5
Gohir.D08G117301 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.9e-15 87.0 55 70.9
Gohir.D11G228750 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.9e-15 87.0 55 70.9
Gohir.D11G251850 Gossypium hirsutum HOM05D004519 ORTHO05D017048 2.9e-15 87.0 55 70.9
Gohir.D13G135501 Gossypium hirsutum HOM05D004519 ORTHO05D017048 8.4e-15 85.5 55 69.1
RcHm_v2.0_Chr5g0062811 Rosa chinensis HOM05D004519 ORTHO05D017048 8.4e-15 85.5 54 70.4
Gorai.008G116000 Gossypium raimondii HOM05D004519 ORTHO05D017048 4.2e-14 83.2 54 68.5
Actinidia29341 Actinidia chinensis HOM05D004519 ORTHO05D052920 2.1e-10 70.9 50 68.0
arahy.Tifrunner.gnm1.ann1.18EICQ Arachis hypogaea HOM05D000755 ORTHO05D017477 3.4e-08 63.5 59 54.2
Gohir.D02G161780 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.9e-06 57.8 35 71.4
Gohir.D10G176966 Gossypium hirsutum HOM05D004519 ORTHO05D017048 1.9e-06 57.8 35 71.4


User provided reference genes

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