Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001536 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 2.5e-133 478.8 244 100.0
CSS0024821 Camellia sinensis var. sinensis HOM05D008369 ORTHO05D005932 5.4e-128 461.1 244 96.3
Rhsim08G0152100 Rhododendron simsii HOM05D008369 ORTHO05D005932 5.2e-46 188.7 256 50.0
Actinidia04866 Actinidia chinensis HOM05D008369 ORTHO05D005932 1.7e-44 183.7 241 48.1
Dinv10658 Davidia involucrata HOM05D008369 ORTHO05D005932 6.3e-36 155.2 240 49.2
Dinv38746 Davidia involucrata HOM05D008369 ORTHO05D005932 5.4e-35 152.1 252 47.6
vmacro17570 Vaccinium macrocarpon HOM05D008369 ORTHO05D005932 3.8e-33 146.0 229 44.5
Cfa019277 Carpinus fangiana HOM05D008369 ORTHO05D005932 5.2e-22 109.0 210 37.6
TAR006G0004 Trochodendron aralioides HOM05D009095 ORTHO05D005932 5.2e-22 109.0 229 40.6
MD06G1197700 Malus domestica HOM05D008369 ORTHO05D005932 8.9e-22 108.2 207 43.0
FAN18G3211 Fragaria x ananassa HOM05D008369 ORTHO05D005932 7.5e-21 105.1 190 40.5
MD14G1205100 Malus domestica HOM05D008369 ORTHO05D005932 9.8e-21 104.8 206 42.7
RcHm_v2.0_Chr7g0182121 Rosa chinensis HOM05D008369 ORTHO05D005932 9.8e-21 104.8 191 41.9
FvH4_5g14530 Fragaria vesca HOM05D008369 ORTHO05D005932 1.4e-19 100.9 190 38.9
FAN13G2099 Fragaria x ananassa HOM05D008369 ORTHO05D005932 2.4e-19 100.1 203 37.4
Duzib084G1416 Durio zibethinus HOM05D008369 ORTHO05D005932 4.1e-19 99.4 223 37.2
FAN08G2699 Fragaria x ananassa HOM05D008369 ORTHO05D005932 4.1e-19 99.4 189 39.2
Gohir.A11G032000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 9.2e-19 98.2 237 35.9
Ciclev10022335m.g Citrus clementina HOM05D008369 ORTHO05D005932 2.1e-18 97.1 191 35.6
Gohir.D11G035400 Gossypium hirsutum HOM05D008369 ORTHO05D005932 2.7e-18 96.7 236 34.3
Haze_07652 Corylus avellana HOM05D008369 ORTHO05D005932 3.5e-18 96.3 187 37.4
COL.COLO4_36949 Corchorus olitorius HOM05D008369 ORTHO05D005932 1.7e-17 94.0 227 34.8
Gorai.007G038200 Gossypium raimondii HOM05D008369 ORTHO05D005932 8.6e-17 91.7 237 33.8
Thecc.03G094300 Theobroma cacao HOM05D008369 ORTHO05D005932 5.6e-16 89.0 231 32.9
Dinv34096 Davidia involucrata HOM05D009095 ORTHO05D005932 2.8e-15 86.7 191 40.3
DCAR_026037 Daucus carota HOM05D008369 ORTHO05D005932 4.7e-15 85.9 161 37.9
Medtr4g108990 Medicago truncatula HOM05D008369 ORTHO05D005932 8.1e-15 85.1 188 37.2
Manes.06G089401 Manihot esculenta HOM05D000041 ORTHO05D006140 1.4e-14 84.3 188 37.8
GSVIVG01007962001 Vitis vinifera HOM05D008369 ORTHO05D005932 1.4e-14 84.3 165 40.6
Prupe.5G198500 Prunus persica HOM05D008369 ORTHO05D005932 3.1e-14 83.2 202 36.1
Nn3g17332 Nelumbo nucifera HOM05D009095 ORTHO05D005932 5.2e-14 82.4 238 34.5
Thecc.02G339500 Theobroma cacao HOM05D009095 ORTHO05D005932 2.0e-13 80.5 178 38.8
Migut.D01759 Erythranthe guttata HOM05D012087 ORTHO05D005932 4.4e-13 79.3 264 33.0
QL10p017723 Quercus lobata HOM05D008369 ORTHO05D005932 4.4e-13 79.3 225 31.6
Sed0006867 Sechium edule HOM05D008369 ORTHO05D005932 4.4e-13 79.3 221 34.8
CiPaw.06G088700 Carya illinoinensis HOM05D009095 ORTHO05D005932 5.8e-13 79.0 188 36.2
Nitab4.5_0001211g0150 Nicotiana tabacum HOM05D012087 ORTHO05D005932 2.2e-12 77.0 227 31.7
Ciclev10032785m.g Citrus clementina HOM05D009095 ORTHO05D005932 4.9e-12 75.9 187 35.3
Lj9A467T87 Lonicera japonica HOM05D008369 ORTHO05D005932 1.1e-11 74.7 229 34.9
TAR622G0621 Trochodendron aralioides HOM05D034691 ORTHO05D005932 1.1e-11 74.7 211 36.5
Cc00_g25850 Coffea canephora HOM05D012087 ORTHO05D005932 1.4e-11 74.3 245 28.6
Haze_11958 Corylus avellana HOM05D009095 ORTHO05D005932 1.4e-11 74.3 220 31.8
SalBow5G3698 Salvia bowleyana HOM05D012087 ORTHO05D005932 1.9e-11 73.9 210 31.4
vmacro01343 Vaccinium macrocarpon HOM05D009095 ORTHO05D005932 1.9e-11 73.9 222 32.9
Oeu052457.1 Olea europaea HOM05D012087 ORTHO05D005932 2.4e-11 73.6 208 33.2
Manes.05G106200 Manihot esculenta HOM05D009095 ORTHO05D005932 7.1e-11 72.0 187 33.7
MSTRG.11371 Avicennia marina HOM05D012087 ORTHO05D005932 1.2e-10 71.2 203 34.0
Phvul.003G188100 Phaseolus vulgaris HOM05D008369 ORTHO05D005932 2.1e-10 70.5 168 35.1
Gorai.008G194900 Gossypium raimondii HOM05D008369 ORTHO05D005932 2.7e-10 70.1 192 35.9
PGSC0003DMG400024562 Solanum tuberosum HOM05D012087 ORTHO05D005932 2.7e-10 70.1 232 29.3
Nitab4.5_0005900g0030 Nicotiana tabacum HOM05D012087 ORTHO05D005932 4.6e-10 69.3 276 30.1
Gohir.A12G179000 Gossypium hirsutum HOM05D008369 ORTHO05D005932 7.8e-10 68.6 188 36.2
Actinidia19933 Actinidia chinensis HOM05D000944 ORTHO05D003581 1.0e-09 68.2 208 30.8
Migut.L01243 Erythranthe guttata HOM05D009095 ORTHO05D005932 1.3e-09 67.8 190 32.1
Lsat_1_v5_gn_1_14361 Lactuca sativa HOM05D008369 ORTHO05D005932 1.7e-09 67.4 218 31.2
Solyc03g115730.3 Solanum lycopersicum HOM05D012087 ORTHO05D005932 1.7e-09 67.4 232 30.6
Sabra17G0070100 Salix brachista HOM05D009095 ORTHO05D005932 3.0e-09 66.6 203 34.0
Ah.02g113780 Amaranthus hybridus HOM05D008369 ORTHO05D005932 3.9e-09 66.2 179 35.8
Sopen03g034710 Solanum pennellii HOM05D012087 ORTHO05D005932 3.9e-09 66.2 232 29.3
Peaxi162Scf00274g00335 Petunia axillaris HOM05D012087 ORTHO05D005932 8.6e-09 65.1 202 30.7
GSVIVG01019947001 Vitis vinifera HOM05D009095 ORTHO05D005932 1.1e-08 64.7 230 33.5
DCAR_016580 Daucus carota HOM05D008369 ORTHO05D005932 1.9e-08 63.9 156 34.6
SGA_v2.0_scaffold313G48329 Striga asiatica HOM05D012087 ORTHO05D005932 1.9e-08 63.9 250 30.0
Aqoxy3G03491 Aquilegia oxysepala HOM05D037250 ORTHO05D005932 2.5e-08 63.5 246 28.0
Gohir.D12G181600 Gossypium hirsutum HOM05D008369 ORTHO05D005932 2.5e-08 63.5 192 34.4
TWI56G0627 Tripterygium wilfordii HOM05D009095 ORTHO05D005932 2.5e-08 63.5 183 34.4
VMungo1215G3129 Vigna mungo HOM05D008369 ORTHO05D005932 2.5e-08 63.5 162 32.1
arahy.Tifrunner.gnm1.ann1.G0M71R Arachis hypogaea HOM05D008369 ORTHO05D005932 4.3e-08 62.8 183 33.9
HanXRQChr05g0155031 Helianthus annuus HOM05D008369 ORTHO05D011941 4.3e-08 62.8 213 32.9
Potri.017G079000 Populus trichocarpa HOM05D009095 ORTHO05D005932 4.3e-08 62.8 193 32.6
Duzib251G0477 Durio zibethinus HOM05D009095 ORTHO05D005932 9.5e-08 61.6 228 29.4
Psat4g049480 Pisum sativum HOM05D008369 ORTHO05D005932 9.5e-08 61.6 191 33.5
Glyma.17G102500 Glycine max HOM05D008369 ORTHO05D005932 1.2e-07 61.2 164 33.5
Lalb_Chr12g0196981 Lupinus albus HOM05D008369 ORTHO05D005932 1.2e-07 61.2 191 31.9
Hund09825 Selenicereus undatus HOM05D008369 ORTHO05D005932 1.6e-07 60.8 167 34.7
TPR.G2001 Trifolium pratense HOM05D008369 ORTHO05D005932 2.1e-07 60.5 179 35.8
arahy.Tifrunner.gnm1.ann1.3IH7MW Arachis hypogaea HOM05D013667 ORTHO05D005932 4.7e-07 59.3 98 43.9
PGR102G2341 Punica granatum HOM05D009095 ORTHO05D005932 4.7e-07 59.3 221 32.6
PSO063G4624 Papaver somniferum HOM05D037250 ORTHO05D050201 6.2e-07 58.9 254 30.3
Phvul.002G169000 Phaseolus vulgaris HOM05D013667 ORTHO05D005932 6.2e-07 58.9 98 40.8
arahy.Tifrunner.gnm1.ann1.7B8RN4 Arachis hypogaea HOM05D008369 ORTHO05D005932 8.1e-07 58.5 191 32.5
CAN.G479.59 Capsicum annuum HOM05D012087 ORTHO05D005932 8.1e-07 58.5 272 26.1
CsaV3_1G005690 Cucumis sativus L. HOM05D008369 ORTHO05D005932 8.1e-07 58.5 128 34.4
Oeu047275.1 Olea europaea HOM05D012087 ORTHO05D005932 1.1e-06 58.2 184 31.5
ClCG09G021960 Citrullus lanatus HOM05D029799 ORTHO05D005932 1.4e-06 57.8 167 31.7
Glyma.05G024700 Glycine max HOM05D008369 ORTHO05D005932 1.4e-06 57.8 164 29.3
PGR044G0243 Punica granatum HOM05D008369 ORTHO05D005932 1.4e-06 57.8 199 32.7
TAR622G1347 Trochodendron aralioides HOM05D034691 ORTHO05D005932 1.4e-06 57.8 217 33.2
CDE02G1239 Ceratophyllum demersum HOM05D036885 ORTHO05D034247 3.1e-06 56.6 189 27.0
MELO3C002975.2 Cucumis melo HOM05D029799 ORTHO05D005932 3.1e-06 56.6 187 32.6
Peaxi162Scf00408g00521 Petunia axillaris HOM05D020902 ORTHO05D005932 4.0e-06 56.2 122 35.2
THA.LOC104818323 Tarenaya hassleriana HOM05D010063 ORTHO05D011941 6.8e-06 55.5 242 29.8
Cc11_g12580 Coffea canephora HOM05D020902 ORTHO05D005932 8.9e-06 55.1 141 31.9


User provided reference genes

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