Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001518 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.9e-107 392.5 193 100.0
CSS0002491 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-104 381.7 193 97.4
CSS0006626 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-104 381.7 193 97.4
CSS0008525 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-104 381.7 193 97.4
CSS0023461 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.6e-103 379.4 193 96.4
CSS0048962 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.8e-102 375.9 193 95.9
CSS0041441 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 3.3e-96 355.1 183 95.1
CSS0030669 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 6.4e-92 340.9 193 88.1
CSS0036967 Camellia sinensis var. sinensis HOM05D003812 ORTHO05D004393 1.7e-84 316.2 193 84.5
Rhsim09G0003800 Rhododendron simsii HOM05D003812 ORTHO05D004393 6.7e-73 277.7 183 73.8
Actinidia18400 Actinidia chinensis HOM05D003812 ORTHO05D004393 3.1e-70 268.9 183 74.9
vmacro06691 Vaccinium macrocarpon HOM05D003812 ORTHO05D004393 6.9e-70 267.7 181 75.1
Oeu064436.1 Olea europaea HOM05D003812 ORTHO05D004393 8.8e-57 224.2 185 62.7
MSTRG.26255 Avicennia marina HOM05D003812 ORTHO05D004393 4.4e-56 221.9 179 62.0
Hma1.2p1_0381F.1_g140050 Hydrangea macrophylla HOM05D003812 ORTHO05D004393 4.8e-55 218.4 183 60.7
Migut.K00296 Erythranthe guttata HOM05D003812 ORTHO05D004393 1.7e-52 209.9 184 56.5
SGA_v2.0_scaffold12G06029 Striga asiatica HOM05D003812 ORTHO05D004393 3.8e-52 208.8 192 54.7
Cc00_g24630 Coffea canephora HOM05D003812 ORTHO05D004393 1.9e-51 206.5 184 60.9
Peaxi162Scf00463g00428 Petunia axillaris HOM05D003812 ORTHO05D004393 4.7e-50 201.8 184 57.1
Lj4C178G3 Lonicera japonica HOM05D003812 ORTHO05D004393 3.0e-49 199.1 200 53.5
DCAR_023841 Daucus carota HOM05D003812 ORTHO05D004393 1.7e-47 193.4 183 55.2
GSVIVG01038248001 Vitis vinifera HOM05D003812 ORTHO05D004393 3.7e-47 192.2 183 55.7
TAR636G0947 Trochodendron aralioides HOM05D003812 ORTHO05D004393 1.8e-46 189.9 185 57.8
Thecc.03G204100 Theobroma cacao HOM05D003812 ORTHO05D004393 3.1e-46 189.1 184 52.7
CAN.G164.18 Capsicum annuum HOM05D003812 ORTHO05D004393 5.3e-46 188.3 183 57.4
COL.COLO4_16818 Corchorus olitorius HOM05D003812 ORTHO05D004393 3.5e-45 185.7 184 52.2
Nitab4.5_0000160g0140 Nicotiana tabacum HOM05D003812 ORTHO05D004393 4.5e-45 185.3 184 54.9
Sopen12g006540 Solanum pennellii HOM05D003812 ORTHO05D004393 5.9e-45 184.9 184 54.9
Nitab4.5_0010162g0010 Nicotiana tabacum HOM05D003812 ORTHO05D004393 7.7e-45 184.5 183 54.1
Solyc12g011180.3 Solanum lycopersicum HOM05D003812 ORTHO05D004393 7.7e-45 184.5 183 53.6
TAR362G0390 Trochodendron aralioides HOM05D003812 ORTHO05D004393 7.7e-45 184.5 185 56.8
Nitab4.5_0003520g0020 Nicotiana tabacum HOM05D003812 ORTHO05D004393 1.0e-44 184.1 184 53.8
SalBow5G1511 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.2e-44 183.0 184 52.7
SalBow5G1547 Salvia bowleyana HOM05D003812 ORTHO05D004393 2.2e-44 183.0 184 52.7
Ciclev10027241m.g Citrus clementina HOM05D003812 ORTHO05D004393 6.5e-44 181.4 184 52.7
arahy.Tifrunner.gnm1.ann1.SFVM41 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-43 179.9 184 50.5
arahy.Tifrunner.gnm1.ann1.U9V8RX Arachis hypogaea HOM05D003812 ORTHO05D004393 1.9e-43 179.9 184 50.5
Nn1g08169 Nelumbo nucifera HOM05D003812 ORTHO05D004393 2.5e-43 179.5 183 50.8
Atru.chr3.1997_Atru.chr3.1998 Acer truncatum HOM05D003812 ORTHO05D004393 1.2e-42 177.2 184 54.3
Aqoxy4G02750 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 1.0e-41 174.1 188 52.1
arahy.Tifrunner.gnm1.ann1.B1HR4A Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-41 173.3 184 50.5
arahy.Tifrunner.gnm1.ann1.CNXN93 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.8e-41 173.3 184 50.5
TWI63G1503 Tripterygium wilfordii HOM05D003812 ORTHO05D004393 6.8e-41 171.4 184 48.9
Lsat_1_v5_gn_8_131861 Lactuca sativa HOM05D003812 ORTHO05D004393 8.8e-41 171.0 182 49.5
VMungo1215G0546 Vigna mungo HOM05D003812 ORTHO05D004393 1.2e-40 170.6 184 51.6
PSO170G6215 Papaver somniferum HOM05D003812 ORTHO05D004393 2.6e-40 169.5 184 52.2
MD15G1143400 Malus domestica HOM05D003812 ORTHO05D004393 5.7e-40 168.3 185 49.7
Cc06_g19250 Coffea canephora HOM05D003812 ORTHO05D004393 7.5e-40 167.9 183 55.2
ECA246G4500 Erigeron canadensis HOM05D003812 ORTHO05D004393 1.7e-39 166.8 184 49.5
Lalb_Chr05g0212041 Lupinus albus HOM05D003812 ORTHO05D004393 2.2e-39 166.4 184 50.0
Gorai.004G122600 Gossypium raimondii HOM05D003812 ORTHO05D004393 4.9e-39 165.2 189 47.6
Manes.01G010200 Manihot esculenta HOM05D003812 ORTHO05D004393 4.9e-39 165.2 185 49.7
Aqoxy7G02949 Aquilegia oxysepala HOM05D003812 ORTHO05D004393 6.3e-39 164.9 188 49.5
CANSAT54G2113 Cannabis sativa HOM05D003812 ORTHO05D004393 6.3e-39 164.9 181 49.2
Cpa.g.sc151.5 Carica papaya HOM05D003812 ORTHO05D004393 6.3e-39 164.9 183 47.5
Phvul.002G113100 Phaseolus vulgaris HOM05D003812 ORTHO05D004393 6.3e-39 164.9 184 49.5
Gohir.A08G102525 Gossypium hirsutum HOM05D003812 ORTHO05D004393 1.4e-38 163.7 187 48.1
Gohir.D08G113808 Gossypium hirsutum HOM05D003812 ORTHO05D004393 2.4e-38 162.9 191 47.1
QL10p064313 Quercus lobata HOM05D003812 ORTHO05D004393 2.0e-37 159.8 185 49.2
Lj2g0024194 Lotus japonicus HOM05D003812 ORTHO05D004393 7.7e-37 157.9 184 48.9
Lj2g0003816 Lotus japonicus HOM05D003812 ORTHO05D004393 1.0e-36 157.5 184 47.3
HanXRQChr05g0135721 Helianthus annuus HOM05D003812 ORTHO05D004393 2.9e-36 156.0 184 46.7
PGR142G2470 Punica granatum HOM05D003812 ORTHO05D004393 2.5e-35 152.9 181 50.8
Prupe.7G062100 Prunus persica HOM05D003812 ORTHO05D004393 5.5e-35 151.8 184 45.1
RcHm_v2.0_Chr2g0084531 Rosa chinensis HOM05D003812 ORTHO05D004393 9.5e-35 151.0 185 45.9
Sc25g0002340 Simmondsia chinensis HOM05D003812 ORTHO05D004393 1.2e-34 150.6 183 45.4
CsaV3_5G037130 Cucumis sativus L. HOM05D003812 ORTHO05D004393 2.8e-34 149.4 184 46.7
Sc13g0007550 Simmondsia chinensis HOM05D003812 ORTHO05D004393 2.8e-34 149.4 183 44.8
Psat3g143480 Pisum sativum HOM05D003812 ORTHO05D004393 3.6e-34 149.1 184 47.3
ClCG09G014660 Citrullus lanatus HOM05D003812 ORTHO05D004393 1.0e-33 147.5 184 45.1
Cfa008512 Carpinus fangiana HOM05D003812 ORTHO05D004393 1.4e-33 147.1 187 46.0
Hund12300 Selenicereus undatus HOM05D003812 ORTHO05D004393 2.3e-33 146.4 191 44.5
Glyma.11G082800 Glycine max HOM05D003812 ORTHO05D004393 4.0e-33 145.6 184 44.6
VMungo0251G1870 Vigna mungo HOM05D000140 ORTHO05D004393 4.0e-33 145.6 185 46.5
Potri.017G007200 Populus trichocarpa HOM05D003812 ORTHO05D004393 1.5e-32 143.7 185 44.3
Sabra17G0008000 Salix brachista HOM05D003812 ORTHO05D004393 4.4e-32 142.1 187 43.9
Sed0027703 Sechium edule HOM05D003812 ORTHO05D004393 4.4e-32 142.1 184 44.0
Medtr7g059160 Medicago truncatula HOM05D003812 ORTHO05D004393 5.7e-32 141.7 184 45.1
CARHR188960 Cardamine hirsuta HOM05D003812 ORTHO05D004393 9.8e-32 141.0 182 43.4
Ca_17095_v3 Cicer arietinum L. HOM05D003812 ORTHO05D004393 4.9e-31 138.7 184 43.5
MELO3C026683.2 Cucumis melo HOM05D003812 ORTHO05D004393 4.9e-31 138.7 185 44.3
SEGI_23375 Sequoiadendron giganteum HOM05D003812 ORTHO05D004393 4.9e-31 138.7 194 43.3
AT5G24450 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 9.2e-30 134.4 182 42.9
AL6G36030 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 1.2e-29 134.0 182 41.2
AT3G49410 Arabidopsis thaliana HOM05D003812 ORTHO05D004393 1.2e-29 134.0 182 39.6
FAN07G0162 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.2e-29 134.0 182 42.9
FAN07G2723 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-29 134.0 182 42.9
FAN26G2119 Fragaria x ananassa HOM05D003812 ORTHO05D004393 1.2e-29 134.0 189 38.6
FvH4_1g00230 Fragaria vesca HOM05D003812 ORTHO05D004393 2.7e-29 132.9 189 41.3
FvH4_4g37371 Fragaria vesca HOM05D003812 ORTHO05D004393 3.5e-29 132.5 184 41.8
Aa31LG11G3700 Aethionema arabicum HOM05D003812 ORTHO05D004393 4.6e-29 132.1 181 39.8
BcaB05g23118 Brassica carinata HOM05D003812 ORTHO05D004393 5.9e-29 131.7 182 39.0
Thhalv10010256m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 5.9e-29 131.7 182 38.5
THA.LOC104814949 Tarenaya hassleriana HOM05D003812 ORTHO05D004393 7.8e-29 131.3 182 41.8
FAN17G2490 Fragaria x ananassa HOM05D004444 ORTHO05D005246 1.0e-28 131.0 177 42.9
TPR.G23263 Trifolium pratense HOM05D003812 ORTHO05D004393 1.3e-28 130.6 184 42.4
Aa31LG4G17960 Aethionema arabicum HOM05D003812 ORTHO05D004393 1.7e-28 130.2 181 38.7
C01p30850 Brassica napus HOM05D003812 ORTHO05D004393 3.9e-28 129.0 184 38.6
BolC1t03017H Brassica oleracea HOM05D003812 ORTHO05D004393 3.9e-28 129.0 184 38.6
Carub.0006s2228 Capsella rubella HOM05D003812 ORTHO05D004393 5.0e-28 128.6 182 40.7
Sp2g22880 Schrenkiella parvula HOM05D003812 ORTHO05D004393 5.0e-28 128.6 182 40.1
AL5G29170 Arabidopsis lyrata HOM05D003812 ORTHO05D004393 6.6e-28 128.3 182 37.9
Carub.0005s1566 Capsella rubella HOM05D003812 ORTHO05D004393 6.6e-28 128.3 182 38.5
Sp5g12660 Schrenkiella parvula HOM05D003812 ORTHO05D004393 1.1e-27 127.5 182 40.1
TPR.G11261 Trifolium pratense HOM05D003812 ORTHO05D004393 1.1e-27 127.5 184 41.8
BcaC09g49951 Brassica carinata HOM05D003812 ORTHO05D004393 1.9e-27 126.7 184 38.0
BraA01t02385Z Brassica rapa HOM05D003812 ORTHO05D004393 1.9e-27 126.7 182 37.9
A01p24730 Brassica napus HOM05D003812 ORTHO05D004393 2.5e-27 126.3 182 37.4
BraA02t09001Z Brassica rapa HOM05D003812 ORTHO05D004393 4.3e-27 125.6 182 40.1
BcaC03g17974 Brassica carinata HOM05D003812 ORTHO05D004393 5.6e-27 125.2 182 40.1
BolC2t12085H Brassica oleracea HOM05D003812 ORTHO05D004393 5.6e-27 125.2 182 40.1
Potri.007G145000 Populus trichocarpa HOM05D003812 ORTHO05D004393 5.6e-27 125.2 183 39.9
BcaB07g29910 Brassica carinata HOM05D003812 ORTHO05D004393 7.3e-27 124.8 182 38.5
CARHR158380 Cardamine hirsuta HOM05D003812 ORTHO05D004393 1.2e-26 124.0 182 37.9
Thhalv10003925m.g Eutrema salsugineum HOM05D003812 ORTHO05D004393 1.2e-26 124.0 182 39.0
A02p40330 Brassica napus HOM05D003812 ORTHO05D004393 4.7e-26 122.1 183 38.3
C02p60290 Brassica napus HOM05D003812 ORTHO05D004393 5.2e-25 118.6 183 38.3
ATR0580G406 Amborella trichopoda HOM05D003812 ORTHO05D004393 9.8e-24 114.4 184 40.8
Mapoly0019s0182 Marchantia polymorpha HOM05D003812 ORTHO05D004393 1.4e-22 110.5 182 38.5
VMungo1268G0001 Vigna mungo HOM05D003812 ORTHO05D004393 1.9e-22 110.2 183 39.9
BcaB01g00718 Brassica carinata HOM05D003812 ORTHO05D004393 2.4e-22 109.8 182 37.4
Pp3c16_3240 Physcomitrium patens HOM05D003812 ORTHO05D004393 1.2e-21 107.5 183 34.4
arahy.Tifrunner.gnm1.ann1.05VQ85 Arachis hypogaea HOM05D003812 ORTHO05D004393 1.6e-21 107.1 125 42.4
BolC2t12088H Brassica oleracea HOM05D003812 ORTHO05D004393 2.7e-21 106.3 185 35.1
HPP92_018576 Vanilla planifolia HOM05D003812 ORTHO05D004393 3.5e-21 105.9 175 38.3
SMO367G0920 Selaginella moellendorffii HOM05D003812 ORTHO05D004393 1.3e-20 104.0 183 33.9
unitig_37.g12590 Utricularia gibba HOM05D003812 ORTHO05D004393 2.3e-20 103.2 82 57.3
Ah.13g073190 Amaranthus hybridus HOM05D003812 ORTHO05D004393 5.0e-20 102.1 140 45.0
AUR62023711 Chenopodium quinoa HOM05D003812 ORTHO05D004393 6.6e-20 101.7 141 44.7
EL10Ac3g06164 Beta vulgaris HOM05D003812 ORTHO05D004393 1.9e-19 100.1 77 62.3
Haze_11133 Corylus avellana HOM05D003812 ORTHO05D004393 1.9e-19 100.1 151 40.4
MBI16_g29049_MAGBIO Magnolia biondii HOM05D003812 ORTHO05D004393 9.5e-19 97.8 120 50.8
CiPaw.01G201400 Carya illinoinensis HOM05D003812 ORTHO05D004393 2.1e-18 96.7 61 77.0
BcaB07g31049 Brassica carinata HOM05D003812 ORTHO05D004393 1.8e-17 93.6 77 53.2
Nitab4.5_0001168g0120 Nicotiana tabacum HOM05D003812 ORTHO05D004393 5.2e-17 92.0 154 39.0
AagrBONN_evm.TU.Sc2ySwM_344.3654 Anthoceros agrestis HOM05D003812 ORTHO05D004393 4.9e-15 85.5 185 31.9
CDE05G0093 Ceratophyllum demersum HOM05D003812 ORTHO05D004393 6.4e-15 85.1 247 28.7
Zm00001eb420200 Zea mays HOM05D003812 ORTHO05D004393 1.2e-13 80.9 178 32.6
BcaC03g17970 Brassica carinata HOM05D003812 ORTHO05D004393 7.3e-11 71.6 182 26.4
SHI01261 Sapria himalayana HOM05D003812 ORTHO05D004393 7.3e-11 71.6 121 38.8
CBR_g26464 Chara braunii HOM05D003812 ORTHO05D004393 7.1e-06 55.1 109 27.5


User provided reference genes

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