Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001516 Camellia sinensis var. sinensis HOM05D003648 ORTHO05D004267 1.6e-159 566.2 330 100.0
Dinv14314 Davidia involucrata HOM05D003648 ORTHO05D004267 1.4e-57 227.6 224 67.0
CiPaw.09G029700 Carya illinoinensis HOM05D003648 ORTHO05D004267 2.9e-52 209.9 317 45.4
Duzib093G1879 Durio zibethinus HOM05D003648 ORTHO05D004267 5.0e-52 209.1 281 56.2
QL07p024078 Quercus lobata HOM05D003648 ORTHO05D004267 1.2e-50 204.5 299 52.8
Thecc.05G173300 Theobroma cacao HOM05D003648 ORTHO05D004267 1.2e-50 204.5 280 47.1
Hma1.2p1_0431F.1_g151600 Hydrangea macrophylla HOM05D003648 ORTHO05D004267 3.6e-50 203.0 312 46.8
Manes.08G043500 Manihot esculenta HOM05D003648 ORTHO05D004267 1.0e-49 201.4 334 43.7
Potri.006G193500 Populus trichocarpa HOM05D003648 ORTHO05D004267 3.0e-49 199.9 327 52.6
Cfa020157 Carpinus fangiana HOM05D003648 ORTHO05D004267 8.8e-49 198.4 317 45.4
Potri.016G058100 Populus trichocarpa HOM05D003648 ORTHO05D004267 1.5e-48 197.6 323 43.3
Actinidia32398 Actinidia chinensis HOM05D003648 ORTHO05D004267 5.7e-48 195.7 315 46.0
Actinidia22042 Actinidia chinensis HOM05D003648 ORTHO05D004267 2.2e-47 193.7 284 50.7
Potri.006G193300 Populus trichocarpa HOM05D003648 ORTHO05D004267 6.3e-47 192.2 313 44.7
CiPaw.10G026000 Carya illinoinensis HOM05D003648 ORTHO05D004267 8.3e-47 191.8 299 45.5
Sabra06G0148400 Salix brachista HOM05D003648 ORTHO05D004267 2.7e-45 186.8 293 43.0
Nn2g15698 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.3e-44 184.5 301 46.8
Sabra16G0061500 Salix brachista HOM05D003648 ORTHO05D004267 1.7e-44 184.1 317 42.6
Duzib128G0816 Durio zibethinus HOM05D003648 ORTHO05D004267 3.8e-44 183.0 332 47.9
Haze_20003 Corylus avellana HOM05D003648 ORTHO05D004267 6.6e-44 182.2 333 42.6
Dinv24064 Davidia involucrata HOM05D003648 ORTHO05D004267 8.6e-44 181.8 317 48.9
COL.COLO4_29331 Corchorus olitorius HOM05D003648 ORTHO05D004267 2.5e-43 180.3 365 43.8
Medtr1g054175 Medicago truncatula HOM05D003648 ORTHO05D004267 2.5e-43 180.3 321 40.5
RcHm_v2.0_Chr3g0479411 Rosa chinensis HOM05D003648 ORTHO05D004267 2.5e-43 180.3 301 42.5
Lalb_Chr18g0047921 Lupinus albus HOM05D003648 ORTHO05D004267 5.5e-43 179.1 286 43.7
Lalb_Chr18g0047911 Lupinus albus HOM05D003648 ORTHO05D004267 7.2e-43 178.7 323 42.1
Lj1g0001044 Lotus japonicus HOM05D003648 ORTHO05D004267 1.6e-42 177.6 263 43.3
Sabra16G0061400 Salix brachista HOM05D003648 ORTHO05D004267 1.6e-42 177.6 312 47.8
Manes.08G043600 Manihot esculenta HOM05D003648 ORTHO05D004267 2.8e-42 176.8 270 42.6
Atru.chr8.1128 Acer truncatum HOM05D003648 ORTHO05D004267 5.2e-41 172.6 324 41.7
VMungo0720G1699 Vigna mungo HOM05D003648 ORTHO05D004267 5.2e-41 172.6 336 42.0
Phvul.007G260600 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 6.8e-41 172.2 318 42.1
Rhsim03G0005500 Rhododendron simsii HOM05D003648 ORTHO05D004267 6.8e-41 172.2 252 48.4
FAN14G0601 Fragaria x ananassa HOM05D003648 ORTHO05D004267 8.9e-41 171.8 307 40.4
Glyma.03G145500 Glycine max HOM05D003648 ORTHO05D004267 1.2e-40 171.4 290 45.5
Prupe.7G079000 Prunus persica HOM05D003648 ORTHO05D004267 2.0e-40 170.6 308 41.2
TPR.G18228 Trifolium pratense HOM05D003648 ORTHO05D004267 2.0e-40 170.6 274 42.7
FvH4_6g22070 Fragaria vesca HOM05D003648 ORTHO05D004267 3.4e-40 169.9 307 40.4
FAN02G2154 Fragaria x ananassa HOM05D003648 ORTHO05D004267 3.4e-40 169.9 288 41.3
Peaxi162Scf00480g00036 Petunia axillaris HOM05D003648 ORTHO05D004267 3.4e-40 169.9 317 41.0
Potri.016G058000 Populus trichocarpa HOM05D003648 ORTHO05D004267 4.4e-40 169.5 299 45.2
MSTRG.19911 Avicennia marina HOM05D003648 ORTHO05D004267 7.5e-40 168.7 295 41.0
Actinidia22043 Actinidia chinensis HOM05D003648 ORTHO05D004267 9.8e-40 168.3 229 58.5
Manes.09G036200 Manihot esculenta HOM05D003648 ORTHO05D004267 9.8e-40 168.3 343 38.5
Haze_20001 Corylus avellana HOM05D003648 ORTHO05D004267 1.3e-39 167.9 226 46.9
FAN05G4067 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.9e-39 166.8 288 41.3
TPR.G15988 Trifolium pratense HOM05D003648 ORTHO05D004267 6.3e-39 165.6 276 40.2
Gohir.D04G089900 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.4e-38 164.5 316 45.9
FAN09G0401 Fragaria x ananassa HOM05D003648 ORTHO05D004267 2.4e-38 163.7 289 40.5
Glyma.19G148700 Glycine max HOM05D003648 ORTHO05D004267 4.1e-38 162.9 325 43.7
MSTRG.6486 Avicennia marina HOM05D003648 ORTHO05D004267 9.2e-38 161.8 299 43.8
MD12G1056100 Malus domestica HOM05D003648 ORTHO05D004267 1.6e-37 161.0 354 38.1
Glyma.09G110100 Glycine max HOM05D003648 ORTHO05D004267 2.0e-37 160.6 297 42.1
MD14G1055800 Malus domestica HOM05D003648 ORTHO05D004267 2.0e-37 160.6 336 39.0
Nitab4.5_0003600g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 7.8e-37 158.7 223 45.7
Cc06_g15770 Coffea canephora HOM05D003648 ORTHO05D004267 1.0e-36 158.3 189 50.3
TWI53G1880 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.0e-36 158.3 225 48.4
Glyma.02G171900 Glycine max HOM05D003648 ORTHO05D004267 1.3e-36 157.9 272 40.4
Gohir.A01G137604 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-36 157.9 287 42.9
TWI77G0250 Tripterygium wilfordii HOM05D003648 ORTHO05D004267 1.7e-36 157.5 256 43.0
Medtr7g093360 Medicago truncatula HOM05D003648 ORTHO05D004267 8.6e-36 155.2 316 41.1
Gohir.A04G053800 Gossypium hirsutum HOM05D003648 ORTHO05D004267 4.3e-35 152.9 335 40.3
Medtr7g093350 Medicago truncatula HOM05D003648 ORTHO05D004267 5.6e-35 152.5 317 41.3
Gorai.012G100300 Gossypium raimondii HOM05D003648 ORTHO05D004267 7.3e-35 152.1 263 49.4
Sed0001893 Sechium edule HOM05D003648 ORTHO05D004267 7.3e-35 152.1 262 43.1
vmacro07898 Vaccinium macrocarpon HOM05D003648 ORTHO05D004267 9.5e-35 151.8 141 58.9
TAR369G0578 Trochodendron aralioides HOM05D003648 ORTHO05D004267 2.8e-34 150.2 330 40.6
Oeu007752.1 Olea europaea HOM05D003648 ORTHO05D004267 1.0e-33 148.3 295 38.3
Cpa.g.sc85.54 Carica papaya HOM05D003648 ORTHO05D004267 1.4e-33 147.9 258 44.2
Nn7g35986 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.8e-33 147.5 338 42.3
TAR633G0715 Trochodendron aralioides HOM05D003648 ORTHO05D004267 1.8e-33 147.5 320 39.1
arahy.Tifrunner.gnm1.ann1.DZ4RFW Arachis hypogaea HOM05D003648 ORTHO05D004267 2.3e-33 147.1 265 46.8
VMungo1383G3335 Vigna mungo HOM05D003648 ORTHO05D004267 2.3e-33 147.1 316 43.7
DCAR_013539 Daucus carota HOM05D003648 ORTHO05D004267 6.8e-33 145.6 321 36.1
Nitab4.5_0006890g0010 Nicotiana tabacum HOM05D003648 ORTHO05D004267 6.8e-33 145.6 314 37.6
arahy.Tifrunner.gnm1.ann1.D8BKSU Arachis hypogaea HOM05D003648 ORTHO05D004267 8.9e-33 145.2 265 44.5
PGSC0003DMG400023669 Solanum tuberosum HOM05D003648 ORTHO05D004267 2.0e-32 144.1 320 38.4
CsaV3_3G038720 Cucumis sativus L. HOM05D003648 ORTHO05D004267 2.6e-32 143.7 268 39.2
Phvul.001G143000 Phaseolus vulgaris HOM05D003648 ORTHO05D004267 2.6e-32 143.7 332 38.6
Sabra06G0148600 Salix brachista HOM05D003648 ORTHO05D004267 3.4e-32 143.3 348 34.8
Gohir.D01G125600 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.3e-31 141.4 286 39.9
Gorai.002G156300 Gossypium raimondii HOM05D003648 ORTHO05D004267 1.3e-31 141.4 286 39.9
Lsat_1_v5_gn_9_26100 Lactuca sativa HOM05D003648 ORTHO05D004267 1.3e-31 141.4 322 38.8
MELO3C009616.2 Cucumis melo HOM05D003648 ORTHO05D004267 2.2e-31 140.6 224 42.0
arahy.Tifrunner.gnm1.ann1.SE7UXR Arachis hypogaea HOM05D003648 ORTHO05D004267 1.1e-30 138.3 362 41.4
EL10Ac3g06898 Beta vulgaris HOM05D003648 ORTHO05D004267 1.4e-30 137.9 237 49.8
Gohir.1Z049549 Gossypium hirsutum HOM05D003648 ORTHO05D004267 1.4e-30 137.9 241 47.3
Nn7g35998 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.9e-30 137.5 290 40.7
Solyc10g080530.2 Solanum lycopersicum HOM05D003648 ORTHO05D004267 7.0e-30 135.6 309 37.9
CAN.G128.46 Capsicum annuum HOM05D003648 ORTHO05D004267 1.6e-29 134.4 327 37.3
Ciclev10012160m.g Citrus clementina HOM05D003648 ORTHO05D004267 1.6e-29 134.4 271 47.6
arahy.Tifrunner.gnm1.ann1.AL1Y46 Arachis hypogaea HOM05D003648 ORTHO05D004267 7.8e-29 132.1 356 41.6
Dinv16371 Davidia involucrata HOM05D003648 ORTHO05D004267 3.0e-28 130.2 293 34.8
Eucgr.A02456 Eucalyptus grandis HOM05D003648 ORTHO05D004267 1.2e-26 124.8 289 40.5
Nn2g15714 Nelumbo nucifera HOM05D003648 ORTHO05D004267 4.7e-26 122.9 303 45.2
TAR623G0235 Trochodendron aralioides HOM05D003648 ORTHO05D004267 4.7e-26 122.9 247 44.1
Hund19206 Selenicereus undatus HOM05D003648 ORTHO05D004267 6.2e-26 122.5 129 56.6
Lj5g0018704 Lotus japonicus HOM05D003648 ORTHO05D004267 1.1e-25 121.7 306 41.5
ClCG10G017600 Citrullus lanatus HOM05D003648 ORTHO05D004267 3.1e-25 120.2 133 51.9
Oeu039811.1 Olea europaea HOM05D003648 ORTHO05D004267 3.1e-25 120.2 168 45.8
DCAR_017003 Daucus carota HOM05D003648 ORTHO05D004267 6.8e-25 119.0 241 39.4
CANSAT64G1307 Cannabis sativa HOM05D003648 ORTHO05D004267 2.6e-24 117.1 173 45.1
GSVIVG01033479001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.6e-24 117.1 265 37.7
GSVIVG01033486001 Vitis vinifera HOM05D003648 ORTHO05D004267 2.6e-24 117.1 128 53.1
Psat3g068040 Pisum sativum HOM05D003648 ORTHO05D004267 5.8e-24 115.9 235 39.1
PGR004G0238 Punica granatum HOM05D003648 ORTHO05D004267 1.3e-23 114.8 137 51.8
HanXRQChr10g0289891 Helianthus annuus HOM05D003648 ORTHO05D004267 6.4e-23 112.5 269 35.3
CAN.G128.47 Capsicum annuum HOM05D003648 ORTHO05D004267 5.4e-22 109.4 335 34.6
Psat0s5171g0040 Pisum sativum HOM05D003648 ORTHO05D004267 5.4e-22 109.4 140 46.4
CARHR137130 Cardamine hirsuta HOM05D003648 ORTHO05D004267 2.1e-21 107.5 137 48.2
C03p28080 Brassica napus HOM05D003648 ORTHO05D004267 3.5e-21 106.7 128 48.4
Ah.04g152510 Amaranthus hybridus HOM05D003648 ORTHO05D004267 4.6e-21 106.3 133 53.4
BcaC01g05312 Brassica carinata HOM05D003648 ORTHO05D004267 4.6e-21 106.3 128 50.8
BolC3t15177H Brassica oleracea HOM05D003648 ORTHO05D004267 4.6e-21 106.3 128 50.0
CDE05G0371 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.0e-20 105.1 123 48.0
Aa31LG1G24140 Aethionema arabicum HOM05D003648 ORTHO05D004267 1.3e-20 104.8 129 48.8
Ah.13g075770 Amaranthus hybridus HOM05D003648 ORTHO05D004267 1.3e-20 104.8 126 50.0
A03p23540 Brassica napus HOM05D003648 ORTHO05D004267 1.3e-20 104.8 128 50.0
BraA03t11571Z Brassica rapa HOM05D003648 ORTHO05D004267 1.3e-20 104.8 128 50.0
Thhalv10017052m.g Eutrema salsugineum HOM05D003648 ORTHO05D004267 1.3e-20 104.8 130 47.7
Migut.J01846 Erythranthe guttata HOM05D003648 ORTHO05D004267 1.7e-20 104.4 171 39.8
SalBow6G7267 Salvia bowleyana HOM05D003648 ORTHO05D004267 2.3e-20 104.0 217 37.8
AL4G40410 Arabidopsis lyrata HOM05D003648 ORTHO05D004267 3.0e-20 103.6 127 48.8
AT2G42040 Arabidopsis thaliana HOM05D003648 ORTHO05D004267 5.1e-20 102.8 130 48.5
BcaB01g03435 Brassica carinata HOM05D003648 ORTHO05D004267 5.1e-20 102.8 134 47.8
C04p69480 Brassica napus HOM05D003648 ORTHO05D004267 1.5e-19 101.3 125 48.0
BolC4t28447H Brassica oleracea HOM05D003648 ORTHO05D004267 1.5e-19 101.3 125 48.0
MBI13_g32435_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 1.9e-19 100.9 131 51.1
THA.LOC104802623 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.9e-19 100.9 286 32.2
Carub.0004s2437 Capsella rubella HOM05D003648 ORTHO05D004267 3.3e-19 100.1 118 50.8
SpUn1032_0010 Schrenkiella parvula HOM05D003648 ORTHO05D004267 3.3e-19 100.1 125 48.8
ECA247G1467 Erigeron canadensis HOM05D003648 ORTHO05D004267 1.2e-18 98.2 231 34.2
MBI19_g43859_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 2.8e-18 97.1 129 51.2
Aqoxy2G00100 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.2e-18 95.9 278 32.0
BraA05t19262Z Brassica rapa HOM05D003648 ORTHO05D004267 6.2e-18 95.9 127 47.2
BcaC02g12455 Brassica carinata HOM05D003648 ORTHO05D004267 8.1e-18 95.5 127 47.2
A05p02700 Brassica napus HOM05D003648 ORTHO05D004267 8.1e-18 95.5 127 47.2
C04p03220 Brassica napus HOM05D003648 ORTHO05D004267 8.1e-18 95.5 127 47.2
BolC4t21960H Brassica oleracea HOM05D003648 ORTHO05D004267 8.1e-18 95.5 127 47.2
CDE06G0452 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.1e-18 95.5 117 48.7
THA.LOC104824476 Tarenaya hassleriana HOM05D003648 ORTHO05D004267 1.8e-17 94.4 274 32.8
BcaC02g07267 Brassica carinata HOM05D003648 ORTHO05D004267 2.3e-17 94.0 122 47.5
MBI19_g03064_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 4.0e-17 93.2 201 37.3
AUR62015354 Chenopodium quinoa HOM05D003648 ORTHO05D004267 5.2e-17 92.8 117 55.6
MBI19_g23209_MAGBIO Magnolia biondii HOM05D003648 ORTHO05D004267 6.8e-17 92.4 136 41.2
CDE04G2150 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 8.9e-17 92.0 120 45.8
Nn7g36026 Nelumbo nucifera HOM05D003648 ORTHO05D004267 1.2e-16 91.7 81 55.6
CDE11G0439 Ceratophyllum demersum HOM05D003648 ORTHO05D004267 1.5e-16 91.3 56 73.2
BcaB06g29223 Brassica carinata HOM05D003648 ORTHO05D004267 7.6e-16 89.0 119 45.4
A04p31970 Brassica napus HOM05D003648 ORTHO05D004267 1.3e-15 88.2 125 43.2
BraA04t18655Z Brassica rapa HOM05D003648 ORTHO05D004267 1.7e-15 87.8 125 43.2
Os02g0773600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 2.9e-15 87.0 48 79.2
HPP92_016181 Vanilla planifolia HOM05D003648 ORTHO05D004267 8.4e-15 85.5 94 48.9
HPP92_026735 Vanilla planifolia HOM05D003648 ORTHO05D004267 8.4e-15 85.5 94 48.9
Os06g0207600 Oryza sativa ssp. japonica HOM05D003648 ORTHO05D004267 1.4e-14 84.7 42 83.3
ATR0598G173 Amborella trichopoda HOM05D003648 ORTHO05D004267 1.7e-12 77.8 231 29.0
Actinidia22048 Actinidia chinensis HOM05D003648 ORTHO05D014310 5.1e-12 76.3 313 29.1
Zm00001eb193290 Zea mays HOM05D003648 ORTHO05D004267 8.6e-12 75.5 39 79.5
SEGI_09004 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-10 71.6 39 76.9
SEGI_21966 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.2e-10 71.6 39 76.9
SEGI_34260 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 2.8e-10 70.5 39 74.4
Dinv36431 Davidia involucrata HOM05D003648 ORTHO05D004267 8.1e-10 68.9 102 40.2
SEGI_22789 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 8.1e-10 68.9 39 74.4
SEGI_00470 Sequoiadendron giganteum HOM05D003648 ORTHO05D004267 1.5e-08 64.7 37 70.3
ATR0598G250 Amborella trichopoda HOM05D003648 ORTHO05D004267 2.9e-07 60.5 43 55.8
Aqoxy1G04270 Aquilegia oxysepala HOM05D003648 ORTHO05D004267 6.4e-07 59.3 37 62.2


User provided reference genes

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