Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001510 Camellia sinensis var. sinensis HOM05D005709 ORTHO05D006306 0.0e+00 1309.3 682 100.0
Actinidia28821 Actinidia chinensis HOM05D005709 ORTHO05D006306 3.9e-285 984.6 687 77.3
vmacro18555 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.0e-270 933.7 671 73.5
Rhsim08G0016800 Rhododendron simsii HOM05D005709 ORTHO05D006306 6.5e-264 914.1 672 72.5
QL06p035832 Quercus lobata HOM05D005709 ORTHO05D006306 1.2e-244 850.1 678 67.0
Lju188A3T31 Lonicera japonica HOM05D005709 ORTHO05D006306 1.4e-242 843.2 679 67.7
Cfa006877 Carpinus fangiana HOM05D005709 ORTHO05D006306 1.8e-242 842.8 674 66.3
Haze_03880 Corylus avellana HOM05D005709 ORTHO05D006306 5.9e-241 837.8 674 66.0
TAR625G0141 Trochodendron aralioides HOM05D005709 ORTHO05D006306 1.0e-240 837.0 670 66.0
CiPaw.07G047300 Carya illinoinensis HOM05D005709 ORTHO05D006306 2.5e-239 832.4 669 65.3
RcHm_v2.0_Chr2g0111161 Rosa chinensis HOM05D005709 ORTHO05D006306 2.5e-239 832.4 671 66.0
CANSAT01G1032 Cannabis sativa HOM05D005709 ORTHO05D006306 4.4e-236 821.6 676 64.8
Nitab4.5_0013799g0010 Nicotiana tabacum HOM05D005709 ORTHO05D006306 4.1e-234 815.1 679 66.0
TWI74G1439 Tripterygium wilfordii HOM05D005709 ORTHO05D006306 4.1e-234 815.1 673 65.8
vmacro21792 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 2.7e-233 812.4 608 70.7
MD03G1143200 Malus domestica HOM05D005709 ORTHO05D006306 6.0e-233 811.2 671 65.3
Ciclev10025155m.g Citrus clementina HOM05D005709 ORTHO05D006306 7.8e-233 810.8 660 65.6
vmacro18553 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 1.7e-232 809.7 568 74.6
Nn3g18597 Nelumbo nucifera HOM05D005709 ORTHO05D006306 1.5e-231 806.6 686 62.1
Sopen11g005470 Solanum pennellii HOM05D005709 ORTHO05D006306 4.3e-231 805.1 675 64.6
MD11G1164000 Malus domestica HOM05D005709 ORTHO05D006306 9.5e-231 803.9 670 64.2
Prupe.6G202100 Prunus persica HOM05D005709 ORTHO05D006306 9.5e-231 803.9 673 64.0
PGSC0003DMG400016130 Solanum tuberosum HOM05D005709 ORTHO05D006306 1.2e-230 803.5 673 64.8
Potri.006G134400 Populus trichocarpa HOM05D005709 ORTHO05D006306 1.4e-229 800.0 667 64.5
Cpa.g.sc55.19 Carica papaya HOM05D005709 ORTHO05D006306 4.0e-229 798.5 672 63.4
FAN28G2327 Fragaria x ananassa HOM05D005709 ORTHO05D006306 4.0e-229 798.5 671 63.9
Eucgr.H04723 Eucalyptus grandis HOM05D005709 ORTHO05D006306 5.2e-229 798.1 669 66.5
Sabra06G0105500 Salix brachista HOM05D005709 ORTHO05D006306 5.2e-229 798.1 685 63.9
Aqoxy5G01380 Aquilegia oxysepala HOM05D005709 ORTHO05D006306 2.0e-228 796.2 675 63.6
Solyc11g010660.2 Solanum lycopersicum HOM05D005709 ORTHO05D006306 7.5e-228 794.3 677 63.5
Nitab4.5_0007624g0020 Nicotiana tabacum HOM05D005709 ORTHO05D006306 6.4e-227 791.2 721 61.4
Manes.12G125900 Manihot esculenta HOM05D005709 ORTHO05D006306 8.3e-227 790.8 673 63.9
FvH4_1g19610 Fragaria vesca HOM05D005709 ORTHO05D006306 1.2e-225 786.9 672 63.4
ECA238G0695 Erigeron canadensis HOM05D005709 ORTHO05D006306 2.1e-225 786.2 672 62.4
ClCG10G007760 Citrullus lanatus HOM05D005709 ORTHO05D006306 3.5e-225 785.4 677 62.6
FAN26G3468 Fragaria x ananassa HOM05D005709 ORTHO05D006306 1.0e-224 783.9 671 63.2
HanXRQChr14g0442981 Helianthus annuus HOM05D005709 ORTHO05D006306 1.2e-222 776.9 683 61.8
PGR102G2444 Punica granatum HOM05D005709 ORTHO05D006306 8.1e-222 774.2 672 62.5
Cc07_g14050 Coffea canephora HOM05D005709 ORTHO05D006306 1.1e-221 773.9 674 63.1
SGA_v2.0_scaffold115G32123 Striga asiatica HOM05D005709 ORTHO05D006306 3.4e-220 768.8 673 62.4
Lj2g0012290 Lotus japonicus HOM05D005709 ORTHO05D006306 7.5e-220 767.7 667 62.2
Atru.chr3.1240 Acer truncatum HOM05D005709 ORTHO05D006306 2.2e-219 766.1 642 64.0
Medtr5g032050 Medicago truncatula HOM05D005709 ORTHO05D006306 2.2e-219 766.1 671 61.4
Thecc.01G090000 Theobroma cacao HOM05D005709 ORTHO05D006306 3.7e-219 765.4 667 62.1
VMungo1215G1966 Vigna mungo HOM05D005709 ORTHO05D006306 4.9e-219 765.0 668 61.1
EL10Ac6g15201 Beta vulgaris HOM05D005709 ORTHO05D006306 1.9e-218 763.1 663 62.3
Hund16527 Selenicereus undatus HOM05D005709 ORTHO05D006306 3.2e-218 762.3 668 62.6
Duzib187G1076 Durio zibethinus HOM05D005709 ORTHO05D006306 4.1e-218 761.9 666 61.1
Ca_22702_v3 Cicer arietinum L. HOM05D005709 ORTHO05D006306 1.6e-217 760.0 664 61.1
MELO3C016416.2 Cucumis melo HOM05D005709 ORTHO05D006306 2.1e-217 759.6 685 60.6
arahy.Tifrunner.gnm1.ann1.7T2SE7 Arachis hypogaea HOM05D005709 ORTHO05D006306 1.9e-215 753.1 669 61.6
arahy.Tifrunner.gnm1.ann1.IH5V0S Arachis hypogaea HOM05D005709 ORTHO05D006306 1.9e-215 753.1 669 61.6
Sed0005807 Sechium edule HOM05D005709 ORTHO05D006306 1.9e-215 753.1 673 61.2
PSO170G3043 Papaver somniferum HOM05D005709 ORTHO05D006306 5.6e-215 751.5 667 61.5
FAN19G1851 Fragaria x ananassa HOM05D005709 ORTHO05D006306 6.2e-214 748.0 637 63.6
Glyma.09G199500 Glycine max HOM05D005709 ORTHO05D006306 1.4e-213 746.9 671 60.2
Ah.02g123530 Amaranthus hybridus HOM05D005709 ORTHO05D006306 1.2e-212 743.8 670 60.6
Thhalv10003796m.g Eutrema salsugineum HOM05D005709 ORTHO05D006306 1.2e-212 743.8 671 59.5
MBI16_g12470_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 1.2e-212 743.8 698 58.3
DCAR_010090 Daucus carota HOM05D005709 ORTHO05D006306 4.4e-212 741.9 668 60.9
Peaxi162Scf00474g00732 Petunia axillaris HOM05D005709 ORTHO05D006306 1.7e-211 740.0 675 60.7
Sp2g28570 Schrenkiella parvula HOM05D005709 ORTHO05D006306 3.8e-211 738.8 672 58.5
Lalb_Chr09g0325971 Lupinus albus HOM05D005709 ORTHO05D006306 4.9e-211 738.4 668 59.7
Psat2g082080 Pisum sativum HOM05D005709 ORTHO05D006306 1.1e-210 737.3 668 58.8
CsaV3_3G006890 Cucumis sativus L. HOM05D005709 ORTHO05D006306 1.4e-210 736.9 677 60.3
Migut.K00802 Erythranthe guttata HOM05D005709 ORTHO05D006306 1.9e-207 726.5 678 58.3
AL8G43070 Arabidopsis lyrata HOM05D005709 ORTHO05D006306 2.4e-205 719.5 665 58.2
COL.COLO4_27357 Corchorus olitorius HOM05D005709 ORTHO05D006306 3.1e-205 719.2 685 58.1
Carub.0008s2634 Capsella rubella HOM05D005709 ORTHO05D006306 1.5e-204 716.8 670 57.9
BolC3t18312H Brassica oleracea HOM05D005709 ORTHO05D006306 2.0e-204 716.5 667 59.2
A06p32320 Brassica napus HOM05D005709 ORTHO05D006306 2.2e-203 713.0 668 57.6
AT5G65490 Arabidopsis thaliana HOM05D005709 ORTHO05D006306 2.9e-203 712.6 663 57.9
CARHR279470 Cardamine hirsuta HOM05D005709 ORTHO05D006306 3.8e-203 712.2 667 58.5
BraA06t26158Z Brassica rapa HOM05D005709 ORTHO05D006306 8.4e-203 711.1 668 58.8
GSVIVG01007131001 Vitis vinifera HOM05D005709 ORTHO05D006306 2.7e-201 706.1 511 69.9
Gorai.003G037400 Gossypium raimondii HOM05D005709 ORTHO05D006306 3.0e-200 702.6 666 57.8
Aa31LG1G16510 Aethionema arabicum HOM05D005709 ORTHO05D006306 6.6e-200 701.4 666 56.0
AUR62003667 Chenopodium quinoa HOM05D005709 ORTHO05D006306 3.3e-199 699.1 625 61.4
Gohir.D03G035800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 3.3e-199 699.1 666 57.8
Gohir.A02G144800 Gossypium hirsutum HOM05D005709 ORTHO05D006306 4.0e-197 692.2 666 57.5
PSO017G1508 Papaver somniferum HOM05D005709 ORTHO05D006306 5.3e-197 691.8 670 57.5
C03p60550 Brassica napus HOM05D005709 ORTHO05D006306 5.8e-196 688.3 667 56.5
vmacro21794 Vaccinium macrocarpon HOM05D005709 ORTHO05D006306 8.4e-195 684.5 610 62.5
ATR0763G252 Amborella trichopoda HOM05D005709 ORTHO05D006306 1.2e-185 654.1 698 53.7
SHI21884 Sapria himalayana HOM05D005709 ORTHO05D006306 1.8e-184 650.2 675 52.6
unitig_32.g11802 Utricularia gibba HOM05D005709 ORTHO05D006306 8.7e-184 647.9 707 51.9
Glyma.01G022800 Glycine max HOM05D005709 ORTHO05D006306 1.6e-182 643.7 541 63.2
Phvul.002G146800 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.8e-181 640.2 545 60.6
Sc03g0000380 Simmondsia chinensis HOM05D005709 ORTHO05D006306 7.1e-178 628.2 516 64.0
AUR62017977 Chenopodium quinoa HOM05D005709 ORTHO05D006306 1.6e-177 627.1 664 55.6
CAN.G1344.19 Capsicum annuum HOM05D005709 ORTHO05D006306 5.1e-176 622.1 552 63.2
Lsat_1_v5_gn_2_70300 Lactuca sativa HOM05D005709 ORTHO05D006306 5.1e-176 622.1 508 63.2
SEGI_11890 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 3.8e-171 605.9 704 49.9
Zm00001eb040880 Zea mays HOM05D005709 ORTHO05D006306 6.7e-168 595.1 678 49.3
Os08g0447200 Oryza sativa ssp. japonica HOM05D005709 ORTHO05D006306 1.1e-167 594.3 675 50.7
HPP92_015350 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.4e-157 560.8 566 56.4
THA.LOC104809180 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 2.1e-145 520.4 496 59.5
PSO675G1794 Papaver somniferum HOM05D005709 ORTHO05D006306 4.4e-143 512.7 449 63.7
SMO137G0394 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 3.6e-129 466.5 665 41.7
Medtr4g125890 Medicago truncatula HOM05D005709 ORTHO05D006306 2.6e-127 460.3 530 52.6
Mapoly0135s0033 Marchantia polymorpha HOM05D005709 ORTHO05D006306 4.3e-122 443.0 752 38.4
TAR381G1594 Trochodendron aralioides HOM05D005709 ORTHO05D006306 6.0e-116 422.5 390 63.3
Pp3c1_9650 Physcomitrium patens HOM05D005709 ORTHO05D006306 1.9e-114 417.5 707 39.0
Dinv13597 Davidia involucrata HOM05D005709 ORTHO05D006306 7.3e-114 415.6 303 76.9
Dinv13596 Davidia involucrata HOM05D005709 ORTHO05D006306 1.6e-108 397.9 340 66.2
MBI16_g19593_MAGBIO Magnolia biondii HOM05D005709 ORTHO05D006306 3.3e-98 363.6 338 60.7
SMO137G0085 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 1.2e-95 355.1 589 38.4
TPR.G36816 Trifolium pratense HOM05D005709 ORTHO05D006306 9.9e-95 352.1 289 61.6
Oeu002141.1 Olea europaea HOM05D005709 ORTHO05D006306 4.6e-92 343.2 303 65.3
AagrBONN_evm.TU.Sc2ySwM_368.1496 Anthoceros agrestis HOM05D005709 ORTHO05D006306 2.9e-86 323.9 666 34.5
Nitab4.5_0001235g0070 Nicotiana tabacum HOM05D005280 ORTHO05D006253 3.0e-83 313.9 432 49.3
TPR.G36731 Trifolium pratense HOM05D005709 ORTHO05D006306 4.3e-82 310.1 302 59.3
CBR_g78875 Chara braunii HOM05D005709 ORTHO05D006306 2.2e-78 297.7 490 39.2
HPP92_015330 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.3e-75 288.5 332 51.5
Nitab4.5_0000294g0080 Nicotiana tabacum HOM05D005280 ORTHO05D006253 5.5e-69 266.5 205 68.8
PSO210G2291 Papaver somniferum HOM05D005709 ORTHO05D006306 1.5e-63 248.4 380 42.1
BcaC01g02778 Brassica carinata HOM05D005709 ORTHO05D006306 6.5e-62 243.0 177 67.8
Sed0017677 Sechium edule HOM05D005709 ORTHO05D006306 1.4e-56 225.3 396 41.4
Oeu031122.1 Olea europaea HOM05D005709 ORTHO05D006306 2.6e-55 221.1 197 60.9
TAR381G1451 Trochodendron aralioides HOM05D005709 ORTHO05D006306 3.2e-53 214.2 149 68.5
THA.LOC104821549 Tarenaya hassleriana HOM05D005709 ORTHO05D006306 1.4e-51 208.8 155 65.8
PRCOL_00002122 Prasinoderma coloniale HOM05D005709 ORTHO05D006306 2.7e-36 157.9 634 28.7
Cre03.g145707 Chlamydomonas reinhardtii HOM05D005709 ORTHO05D006306 4.4e-34 150.6 435 29.7
BcaC01g02777 Brassica carinata HOM05D005709 ORTHO05D006306 4.5e-31 140.6 185 46.5
BcaC01g02779 Brassica carinata HOM05D005709 ORTHO05D006306 1.3e-30 139.0 123 52.8
SEGI_13404 Sequoiadendron giganteum HOM05D005709 ORTHO05D006306 2.0e-18 98.6 126 50.8
Phvul.008G217000 Phaseolus vulgaris HOM05D005709 ORTHO05D006306 1.4e-16 92.4 58 81.0
SMO162G0006 Selaginella moellendorffii HOM05D000981 ORTHO05D006306 1.0e-14 86.3 171 36.3
SalBow5G5475 Salvia bowleyana HOM05D036480 ORTHO05D006306 3.8e-14 84.3 103 52.4
SMO207G0001 Selaginella moellendorffii HOM05D005709 ORTHO05D006306 5.0e-14 84.0 102 45.1
BolC2t12478H Brassica oleracea HOM05D005709 ORTHO05D006306 6.6e-14 83.6 127 42.5
HPP92_015331 Vanilla planifolia HOM05D005709 ORTHO05D006306 1.1e-13 82.8 56 67.9
C02p64140 Brassica napus HOM05D005709 ORTHO05D006306 1.9e-13 82.0 127 40.9
TPR.G34440 Trifolium pratense HOM05D005709 ORTHO05D006306 3.3e-13 81.3 64 64.1
CARHR215690 Cardamine hirsuta HOM05D005709 ORTHO05D006306 1.2e-12 79.3 55 67.3
TPR.G25795 Trifolium pratense HOM05D005709 ORTHO05D006306 4.0e-11 74.3 64 59.4


User provided reference genes

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