Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001459 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 0.0e+00 1418.7 757 100.0
CSS0020826 Camellia sinensis var. sinensis HOM05D004705 ORTHO05D005595 0.0e+00 1398.3 757 98.8
Dinv38075 Davidia involucrata HOM05D004705 ORTHO05D005595 9.7e-293 1010.0 800 70.6
vmacro16932 Vaccinium macrocarpon HOM05D004705 ORTHO05D005595 2.2e-284 982.2 799 69.5
RhsimUnG0009400 Rhododendron simsii HOM05D004705 ORTHO05D005595 6.8e-270 934.1 844 65.2
Rhsim12G0195000 Rhododendron simsii HOM05D004705 ORTHO05D005595 1.4e-267 926.4 844 64.7
Lj5A66T57 Lonicera japonica HOM05D004705 ORTHO05D005595 5.2e-254 881.3 802 64.8
Ciclev10024977m.g Citrus clementina HOM05D004705 ORTHO05D005595 1.7e-252 876.3 784 62.4
Cc04_g03760 Coffea canephora HOM05D004705 ORTHO05D005595 8.3e-252 874.0 814 59.8
Dinv30551 Davidia involucrata HOM05D004705 ORTHO05D005595 1.1e-251 873.6 760 65.1
QL05p026953 Quercus lobata HOM05D004705 ORTHO05D005595 1.4e-251 873.2 777 63.7
Thecc.06G077700 Theobroma cacao HOM05D004705 ORTHO05D005595 3.2e-251 872.1 778 62.3
Haze_16487 Corylus avellana HOM05D004705 ORTHO05D005595 3.5e-250 868.6 779 64.4
Prupe.3G077300 Prunus persica HOM05D004705 ORTHO05D005595 2.3e-249 865.9 780 62.1
Potri.003G058600 Populus trichocarpa HOM05D004705 ORTHO05D005595 2.5e-248 862.4 778 62.5
Cfa002032 Carpinus fangiana HOM05D004705 ORTHO05D005595 1.6e-247 859.8 777 64.5
RcHm_v2.0_Chr2g0137071 Rosa chinensis HOM05D004705 ORTHO05D005595 1.9e-243 846.3 779 60.8
Peaxi162Scf00015g00532 Petunia axillaris HOM05D004705 ORTHO05D005595 1.0e-241 840.5 838 57.8
PGSC0003DMG400005697 Solanum tuberosum HOM05D004705 ORTHO05D005595 2.3e-241 839.3 822 58.6
Duzib235G0494 Durio zibethinus HOM05D004705 ORTHO05D005595 2.5e-240 835.9 780 62.1
Atru.chr1.3167 Acer truncatum HOM05D004705 ORTHO05D005595 3.6e-239 832.0 768 61.1
CiPaw.01G242500 Carya illinoinensis HOM05D004705 ORTHO05D005595 1.4e-238 830.1 782 62.7
TAR626G1984 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.3e-238 829.3 778 61.8
CAN.G438.96 Capsicum annuum HOM05D004705 ORTHO05D005595 5.2e-238 828.2 813 58.1
FvH4_6g30700 Fragaria vesca HOM05D004705 ORTHO05D005595 8.9e-238 827.4 779 60.2
Sopen03g038820 Solanum pennellii HOM05D004705 ORTHO05D005595 3.4e-237 825.5 821 57.7
Manes.04G119400 Manihot esculenta HOM05D004705 ORTHO05D005595 8.3e-236 820.8 790 59.7
Solyc03g119940.3 Solanum lycopersicum HOM05D004705 ORTHO05D005595 1.1e-235 820.5 825 57.8
Oeu051920.1 Olea europaea HOM05D004705 ORTHO05D005595 1.4e-235 820.1 837 58.1
FAN09G0848 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.1e-235 817.8 779 58.8
Nitab4.5_0004817g0040 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.2e-234 817.0 804 58.5
MD17G1201400 Malus domestica HOM05D004705 ORTHO05D005595 3.5e-234 815.5 795 58.5
GSVIVG01017208001 Vitis vinifera HOM05D004705 ORTHO05D005595 3.5e-234 815.5 776 60.3
ECA247G3649 Erigeron canadensis HOM05D004705 ORTHO05D005595 4.6e-234 815.1 801 58.8
FAN14G4493 Fragaria x ananassa HOM05D004705 ORTHO05D005595 1.3e-233 813.5 745 61.2
MSTRG.20727 Avicennia marina HOM05D004705 ORTHO05D005595 3.9e-233 812.0 829 58.4
FAN05G0816 Fragaria x ananassa HOM05D004705 ORTHO05D005595 6.6e-233 811.2 777 58.2
Gohir.A02G124100 Gossypium hirsutum HOM05D004705 ORTHO05D005595 6.6e-233 811.2 778 59.8
SGA_v2.0_scaffold153G36966 Striga asiatica HOM05D004705 ORTHO05D005595 6.6e-233 811.2 777 60.1
FAN02G3197 Fragaria x ananassa HOM05D004705 ORTHO05D005595 8.6e-233 810.8 777 58.8
TAR383G1056 Trochodendron aralioides HOM05D004705 ORTHO05D005595 2.5e-232 809.3 789 60.7
Potri.001G175500 Populus trichocarpa HOM05D004705 ORTHO05D005595 4.7e-231 805.1 744 61.2
TWI75G0140 Tripterygium wilfordii HOM05D004705 ORTHO05D005595 1.1e-230 803.9 784 59.2
Gohir.D03G064900 Gossypium hirsutum HOM05D004705 ORTHO05D005595 1.4e-230 803.5 815 57.8
Duzib160G0698 Durio zibethinus HOM05D004705 ORTHO05D005595 1.8e-230 803.1 744 60.8
DCAR_025463 Daucus carota HOM05D004705 ORTHO05D005595 2.6e-229 799.3 825 56.8
Gorai.002G057500 Gossypium raimondii HOM05D004705 ORTHO05D005595 3.4e-229 798.9 815 57.5
HanXRQChr02g0032571 Helianthus annuus HOM05D004705 ORTHO05D005595 2.3e-225 786.2 785 58.0
Oeu000022.1 Olea europaea HOM05D004705 ORTHO05D005595 5.6e-224 781.6 803 58.8
Aqoxy7G01953 Aquilegia oxysepala HOM05D004705 ORTHO05D005595 1.6e-223 780.0 798 56.9
Glyma.15G011700 Glycine max HOM05D004705 ORTHO05D005595 1.5e-221 773.5 795 56.0
ClCG07G012910 Citrullus lanatus HOM05D004705 ORTHO05D005595 4.4e-221 771.9 773 56.5
Nn8g39334 Nelumbo nucifera HOM05D004705 ORTHO05D005595 2.9e-220 769.2 765 57.8
Lj3g0018532 Lotus japonicus HOM05D004705 ORTHO05D005595 1.4e-219 766.9 762 57.5
Phvul.005G173800 Phaseolus vulgaris HOM05D004705 ORTHO05D005595 1.4e-219 766.9 782 57.2
MELO3C012944.2 Cucumis melo HOM05D004705 ORTHO05D005595 1.2e-218 763.8 775 55.6
MSTRG.17159 Avicennia marina HOM05D004705 ORTHO05D005595 2.1e-218 763.1 823 55.8
Sp3g13840 Schrenkiella parvula HOM05D004705 ORTHO05D005595 1.0e-217 760.8 774 55.9
Lsat_1_v5_gn_1_33801 Lactuca sativa HOM05D004705 ORTHO05D005595 6.6e-217 758.1 790 55.9
Hund00574 Selenicereus undatus HOM05D004705 ORTHO05D005595 2.8e-215 752.7 766 57.4
EL10Ac9g21966 Beta vulgaris HOM05D004705 ORTHO05D005595 4.8e-215 751.9 810 54.3
Glyma.13G362100 Glycine max HOM05D004705 ORTHO05D005595 6.2e-215 751.5 779 57.1
PGR031G3493 Punica granatum HOM05D004705 ORTHO05D005595 6.2e-215 751.5 767 57.8
CsaV3_3G026670 Cucumis sativus L. HOM05D004705 ORTHO05D005595 1.1e-214 750.7 770 54.4
Sed0012410 Sechium edule HOM05D004705 ORTHO05D005595 3.1e-214 749.2 765 55.9
CANSAT56G4120 Cannabis sativa HOM05D004705 ORTHO05D005595 4.0e-214 748.8 794 56.9
SalBow5G4930 Salvia bowleyana HOM05D004705 ORTHO05D005595 3.8e-212 742.3 732 56.7
Manes.11G049500 Manihot esculenta HOM05D004705 ORTHO05D005595 5.1e-209 731.9 663 60.2
Aa31LG8G2800 Aethionema arabicum HOM05D004705 ORTHO05D005595 3.3e-208 729.2 763 55.7
AUR62016408 Chenopodium quinoa HOM05D004705 ORTHO05D005595 9.6e-208 727.6 800 52.8
Ca_01096_v3 Cicer arietinum L. HOM05D004705 ORTHO05D005595 1.4e-206 723.8 738 56.5
A05p33830 Brassica napus HOM05D004705 ORTHO05D005595 4.5e-205 718.8 762 54.9
THA.LOC104818041 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 7.6e-205 718.0 778 53.9
Carub.0003s1530 Capsella rubella HOM05D004705 ORTHO05D005595 2.2e-204 716.5 768 53.6
Medtr2g102680 Medicago truncatula HOM05D004705 ORTHO05D005595 1.4e-203 713.8 734 56.0
CARHR090640 Cardamine hirsuta HOM05D004705 ORTHO05D005595 2.1e-202 709.9 760 53.7
VMungo1080G1183 Vigna mungo HOM05D004705 ORTHO05D005595 2.1e-202 709.9 774 55.8
AL3G28180 Arabidopsis lyrata HOM05D004705 ORTHO05D005595 2.7e-202 709.5 765 53.1
PSO170G5959 Papaver somniferum HOM05D004705 ORTHO05D005595 2.7e-202 709.5 775 54.2
PSO017G1026 Papaver somniferum HOM05D004705 ORTHO05D005595 6.0e-202 708.4 775 53.9
C05p51460 Brassica napus HOM05D004705 ORTHO05D005595 1.1e-200 704.1 757 54.3
Thhalv10020202m.g Eutrema salsugineum HOM05D004705 ORTHO05D005595 1.3e-199 700.7 774 52.7
AT3G15550 Arabidopsis thaliana HOM05D004705 ORTHO05D005595 2.1e-199 699.9 768 52.3
Sabra01G0137000 Salix brachista HOM05D004705 ORTHO05D005595 4.8e-199 698.7 730 55.5
BcaC05g28954 Brassica carinata HOM05D004705 ORTHO05D005595 1.4e-198 697.2 758 54.0
BraA01t03898Z Brassica rapa HOM05D004705 ORTHO05D005595 3.4e-197 692.6 757 53.2
MBI04_g43364_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 2.9e-196 689.5 866 49.8
A01p38480 Brassica napus HOM05D004705 ORTHO05D005595 3.8e-196 689.1 757 52.8
BcaB06g29595 Brassica carinata HOM05D004705 ORTHO05D005595 6.5e-196 688.3 764 53.9
C01p48810 Brassica napus HOM05D004705 ORTHO05D005595 1.4e-195 687.2 760 53.8
Sc12g0008970 Simmondsia chinensis HOM05D004705 ORTHO05D005595 1.4e-195 687.2 803 52.4
Lalb_Chr22g0351091 Lupinus albus HOM05D004705 ORTHO05D005595 4.2e-195 685.6 733 53.8
TPR.G37249 Trifolium pratense HOM05D004705 ORTHO05D005595 9.3e-195 684.5 769 52.9
BraA05t22205Z Brassica rapa HOM05D004705 ORTHO05D005595 1.2e-194 684.1 757 53.0
Eucgr.J03029 Eucalyptus grandis HOM05D004705 ORTHO05D005595 1.6e-194 683.7 746 53.4
BcaC09g48528 Brassica carinata HOM05D004705 ORTHO05D005595 8.7e-193 677.9 757 52.3
AUR62011594 Chenopodium quinoa HOM05D004705 ORTHO05D005595 1.9e-192 676.8 616 59.4
Lalb_Chr24g0395661 Lupinus albus HOM05D004705 ORTHO05D005595 2.8e-191 672.9 686 54.4
arahy.Tifrunner.gnm1.ann1.1G4SNU Arachis hypogaea HOM05D004705 ORTHO05D005595 8.2e-191 671.4 766 52.0
BcaB04g20914 Brassica carinata HOM05D004705 ORTHO05D005595 8.2e-191 671.4 759 52.7
Cpa.g.c32383.1 Carica papaya HOM05D004705 ORTHO05D005595 1.1e-190 671.0 717 57.2
BolC1t04836H Brassica oleracea HOM05D004705 ORTHO05D005595 5.3e-190 668.7 760 52.8
COL.COLO4_12857 Corchorus olitorius HOM05D004705 ORTHO05D005595 1.5e-189 667.2 771 52.9
Psat5g299960 Pisum sativum HOM05D004705 ORTHO05D005595 7.6e-189 664.8 611 58.8
arahy.Tifrunner.gnm1.ann1.WXP04W Arachis hypogaea HOM05D004705 ORTHO05D005595 1.7e-188 663.7 763 51.6
BolC5t33833H Brassica oleracea HOM05D004705 ORTHO05D005595 1.2e-186 657.5 757 52.0
arahy.Tifrunner.gnm1.ann1.HFN88V Arachis hypogaea HOM05D004705 ORTHO05D005595 1.0e-185 654.4 740 54.5
unitig_26.g8885 Utricularia gibba HOM05D004705 ORTHO05D005595 3.3e-176 622.9 628 54.0
Nitab4.5_0000410g0340 Nicotiana tabacum HOM05D004705 ORTHO05D005595 1.5e-173 614.0 439 71.1
Lalb_Chr25g0279551 Lupinus albus HOM05D004705 ORTHO05D005595 1.2e-170 604.4 719 51.5
arahy.Tifrunner.gnm1.ann1.AD4PBH Arachis hypogaea HOM05D004705 ORTHO05D005595 1.1e-168 597.8 740 51.6
Migut.B01589 Erythranthe guttata HOM05D004705 ORTHO05D005595 3.7e-167 592.8 769 48.4
Nn2g11880 Nelumbo nucifera HOM05D004705 ORTHO05D005595 1.1e-166 591.3 665 52.0
Os01g0176500 Oryza sativa ssp. japonica HOM05D004705 ORTHO05D005595 1.1e-163 581.3 883 43.5
ATR0083G057 Amborella trichopoda HOM05D004705 ORTHO05D005595 2.6e-160 570.1 855 44.6
Zm00001eb122560 Zea mays HOM05D004705 ORTHO05D005595 2.2e-159 567.0 873 42.6
CDE01G0719 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 9.1e-150 535.0 765 45.6
THA.LOC104812485 Tarenaya hassleriana HOM05D004705 ORTHO05D005595 4.2e-147 526.2 441 61.0
Ah.01g021140 Amaranthus hybridus HOM05D004705 ORTHO05D005595 2.8e-143 513.5 775 43.5
unitig_61.g26415 Utricularia gibba HOM05D004705 ORTHO05D005595 3.9e-132 476.5 524 52.1
SEGI_27484 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.9e-116 423.3 747 39.1
Actinidia16007 Actinidia chinensis HOM05D004705 ORTHO05D005595 8.4e-103 379.0 309 64.7
MBI01_g15493_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 1.0e-100 372.1 778 37.4
SEGI_13982 Sequoiadendron giganteum HOM05D004705 ORTHO05D005595 3.3e-99 367.1 699 36.6
Pp3c8_15560 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.0e-88 331.3 482 41.5
Pp3c13_19170 Physcomitrium patens HOM05D004705 ORTHO05D005595 3.8e-87 327.0 488 40.6
Actinidia16006 Actinidia chinensis HOM05D004705 ORTHO05D005595 8.4e-87 325.9 389 56.8
AagrBONN_evm.TU.Sc2ySwM_228.3613 Anthoceros agrestis HOM05D004705 ORTHO05D005595 2.1e-85 321.2 634 34.7
Pp3c23_2990 Physcomitrium patens HOM05D004705 ORTHO05D005595 7.9e-85 319.3 480 41.0
CDE02G1329 Ceratophyllum demersum HOM05D004705 ORTHO05D005595 2.5e-83 314.3 469 41.8
MBI04_g47892_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 9.0e-81 305.8 538 43.5
Pp3c23_18290 Physcomitrium patens HOM05D004705 ORTHO05D005595 2.5e-78 297.7 436 39.7
Pp3c24_17130 Physcomitrium patens HOM05D004705 ORTHO05D005595 4.2e-78 297.0 469 39.7
Pp3c20_1400 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-77 295.0 485 37.3
Pp3c20_1403 Physcomitrium patens HOM05D004705 ORTHO05D005595 1.6e-77 295.0 485 37.3
Lj8C335T16 Lonicera japonica HOM05D004705 ORTHO05D005595 4.1e-73 280.4 383 49.9
Pp3c8_22450 Physcomitrium patens HOM05D004705 ORTHO05D005595 5.9e-72 276.6 574 34.0
SHI09686 Sapria himalayana HOM05D004705 ORTHO05D005595 2.1e-61 241.5 634 34.5
SMO147G0411 Selaginella moellendorffii HOM05D004705 ORTHO05D005595 1.0e-55 222.6 197 54.3
Actinidia08822 Actinidia chinensis HOM05D004705 ORTHO05D005595 1.4e-44 185.7 204 55.4
Nitab4.5_0000410g0350 Nicotiana tabacum HOM05D004705 ORTHO05D005595 2.2e-39 168.3 408 37.7
BcaC09g48527 Brassica carinata HOM05D004705 ORTHO05D005595 6.8e-28 130.2 92 63.0
Actinidia08821 Actinidia chinensis HOM05D004705 ORTHO05D005595 5.6e-22 110.5 359 34.8
Medtr1g107505 Medicago truncatula HOM05D004705 ORTHO05D005595 8.9e-20 103.2 71 70.4
GSVIVG01017207001 Vitis vinifera HOM05D029100 ORTHO05D016439 6.0e-16 90.5 81 55.6
MBI04_g47893_MAGBIO Magnolia biondii HOM05D004705 ORTHO05D005595 7.3e-14 83.6 209 32.5
Cpa.g.c42332 Carica papaya HOM05D004705 ORTHO05D005595 6.8e-12 77.0 53 60.4
FAN08G3635 Fragaria x ananassa HOM05D004705 ORTHO05D000113 1.1e-09 69.7 74 47.3
FAN15G3749 Fragaria x ananassa HOM05D005026 ORTHO05D005981 1.1e-09 69.7 74 47.3
FAN21G1601 Fragaria x ananassa HOM05D000031 ORTHO05D000030 1.4e-09 69.3 53 54.7
Medtr1g041460 Medicago truncatula HOM05D004705 ORTHO05D005595 2.4e-09 68.6 49 69.4
unitig_26.g8886 Utricularia gibba HOM05D004705 ORTHO05D005595 4.1e-09 67.8 77 49.4
unitig_61.g26414 Utricularia gibba HOM05D000584 ORTHO05D000458 5.4e-09 67.4 151 32.5
FAN07G2703 Fragaria x ananassa HOM05D004705 ORTHO05D005595 7.1e-09 67.0 85 43.5
Ah.06g184670 Amaranthus hybridus HOM05D004705 ORTHO05D005595 5.1e-07 60.8 45 64.4
Ah.02g118940 Amaranthus hybridus HOM05D003112 ORTHO05D005595 7.3e-06 57.0 65 49.2


User provided reference genes

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