Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001451 Camellia sinensis var. sinensis HOM05D002148 ORTHO05D002547 4.7e-208 727.6 370 100.0
Dinv40880 Davidia involucrata HOM05D002148 ORTHO05D002547 1.0e-29 135.2 176 50.0
Rhsim04G0011000 Rhododendron simsii HOM05D002148 ORTHO05D002547 1.8e-26 124.4 167 47.3
Actinidia37136 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.4e-26 124.0 161 51.6
Actinidia35414 Actinidia chinensis HOM05D002148 ORTHO05D002547 1.0e-24 118.6 161 50.9
Actinidia30383 Actinidia chinensis HOM05D002148 ORTHO05D002547 2.7e-22 110.5 115 54.8
Actinidia04991 Actinidia chinensis HOM05D002148 ORTHO05D002547 3.5e-22 110.2 167 43.7
vmacro09629 Vaccinium macrocarpon HOM05D002148 ORTHO05D002547 5.3e-18 96.3 231 33.3
TAR626G1137 Trochodendron aralioides HOM05D002148 ORTHO05D002547 6.3e-11 72.8 219 32.0
TAR627G0712 Trochodendron aralioides HOM05D002148 ORTHO05D002547 2.0e-09 67.8 185 35.1
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.7e-08 64.7 34 94.1
Gorai.013G150900 Gossypium raimondii HOM05D002148 ORTHO05D002547 1.7e-08 64.7 85 49.4
Atru.chr2.3760 Acer truncatum HOM05D002148 ORTHO05D002547 3.8e-08 63.5 170 32.9
Duzib170G0032 Durio zibethinus HOM05D002148 ORTHO05D002547 5.0e-08 63.2 171 32.2
COL.COLO4_07736 Corchorus olitorius HOM05D002148 ORTHO05D002547 6.5e-08 62.8 230 27.8
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 3.2e-07 60.5 65 56.9
Gohir.A13G131300 Gossypium hirsutum HOM05D002148 ORTHO05D002547 3.2e-07 60.5 86 48.8
PGR031G0430 Punica granatum HOM05D002148 ORTHO05D002547 3.2e-07 60.5 147 31.3
Atru.chr2.3746 Acer truncatum HOM05D002148 ORTHO05D002547 4.2e-07 60.1 170 31.8
Gohir.D13G134700 Gossypium hirsutum HOM05D002148 ORTHO05D002547 4.2e-07 60.1 86 48.8
Ciclev10007522m.g Citrus clementina HOM05D002148 ORTHO05D002547 1.2e-06 58.5 193 29.5
Hund23052 Selenicereus undatus HOM05D002148 ORTHO05D002547 1.6e-06 58.2 130 34.6
Dinv06564 Davidia involucrata HOM05D002696 ORTHO05D003940 2.1e-06 57.8 55 58.2
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 2.7e-06 57.4 38 76.3
HanXRQChr11g0334391 Helianthus annuus HOM05D002148 ORTHO05D035164 2.7e-06 57.4 129 35.7
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 2.7e-06 57.4 32 84.4
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 3.6e-06 57.0 55 54.5
Cpa.g.sc12.132 Carica papaya HOM05D002148 ORTHO05D002547 3.6e-06 57.0 170 28.8
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 3.6e-06 57.0 44 70.5
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 3.6e-06 57.0 33 78.8
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.7e-06 56.6 33 78.8
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 4.7e-06 56.6 33 78.8
Cfa016923 Carpinus fangiana HOM05D002148 ORTHO05D002547 4.7e-06 56.6 139 35.3
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 4.7e-06 56.6 34 76.5
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 4.7e-06 56.6 39 74.4
MBI14_g37016_MAGBIO Magnolia biondii HOM05D002148 ORTHO05D002547 4.7e-06 56.6 175 29.7
Manes.15G057800 Manihot esculenta HOM05D002148 ORTHO05D002547 4.7e-06 56.6 92 41.3
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 4.7e-06 56.6 33 78.8
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 4.7e-06 56.6 33 78.8
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 6.1e-06 56.2 33 81.8
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 6.1e-06 56.2 55 56.4
Thecc.07G008900 Theobroma cacao HOM05D002148 ORTHO05D002547 6.1e-06 56.2 76 47.4
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 7.9e-06 55.8 55 52.7
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 7.9e-06 55.8 33 78.8
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 7.9e-06 55.8 34 76.5


User provided reference genes

Program Settings