Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001440 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.1e-207 726.5 381 100.0
CSS0047961 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 1.2e-203 713.0 381 97.9
Actinidia13942 Actinidia chinensis HOM05D007537 ORTHO05D009602 6.4e-136 488.0 386 70.5
CSS0034530 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 3.7e-131 472.2 387 69.8
vmacro10037 Vaccinium macrocarpon HOM05D007537 ORTHO05D009602 2.7e-126 456.1 388 67.0
Rhsim09G0177700 Rhododendron simsii HOM05D007537 ORTHO05D009602 2.3e-125 453.0 389 64.8
Duzib114G0965 Durio zibethinus HOM05D007537 ORTHO05D009602 3.4e-113 412.5 389 59.9
Cc02_g06360 Coffea canephora HOM05D007537 ORTHO05D009602 8.5e-112 407.9 392 59.7
Nitab4.5_0000797g0160 Nicotiana tabacum HOM05D007537 ORTHO05D009602 3.2e-111 406.0 401 59.6
Peaxi162Scf00284g01051 Petunia axillaris HOM05D007537 ORTHO05D009602 5.5e-111 405.2 398 60.1
COL.COLO4_25746 Corchorus olitorius HOM05D007537 ORTHO05D009602 1.0e-109 401.0 387 58.4
Nitab4.5_0008231g0020 Nicotiana tabacum HOM05D007537 ORTHO05D009602 5.1e-109 398.7 400 58.0
CiPaw.01G299800 Carya illinoinensis HOM05D007537 ORTHO05D009602 4.4e-108 395.6 389 57.8
Solyc06g051360.3 Solanum lycopersicum HOM05D007537 ORTHO05D009602 9.7e-108 394.4 404 56.7
Cfa001307 Carpinus fangiana HOM05D007537 ORTHO05D009602 4.8e-107 392.1 392 58.2
Sopen06g017350 Solanum pennellii HOM05D007537 ORTHO05D009602 3.1e-106 389.4 397 56.9
TAR633G2636 Trochodendron aralioides HOM05D007537 ORTHO05D009602 1.2e-105 387.5 387 59.2
Thecc.10G014900 Theobroma cacao HOM05D007537 ORTHO05D009602 3.5e-105 386.0 388 57.0
Nn2g10869 Nelumbo nucifera HOM05D007537 ORTHO05D009602 4.2e-103 379.0 402 56.0
PGSC0003DMG400024236 Solanum tuberosum HOM05D007537 ORTHO05D009602 8.8e-101 371.3 401 56.4
Prupe.2G251400 Prunus persica HOM05D007537 ORTHO05D009602 5.7e-100 368.6 393 57.8
Manes.07G130900 Manihot esculenta HOM05D007537 ORTHO05D009602 1.8e-98 363.6 386 54.7
Sabra08G0051400 Salix brachista HOM05D007537 ORTHO05D009602 3.1e-98 362.8 373 57.6
Haze_17238 Corylus avellana HOM05D007537 ORTHO05D009602 1.6e-97 360.5 392 56.1
Glyma.02G257900 Glycine max HOM05D007537 ORTHO05D009602 7.7e-97 358.2 370 54.1
Aqoxy2G00863 Aquilegia oxysepala HOM05D007537 ORTHO05D009602 1.9e-95 353.6 394 54.6
Potri.008G069800 Populus trichocarpa HOM05D007537 ORTHO05D009602 7.2e-95 351.7 385 55.8
Gohir.D13G016000 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.6e-94 350.5 393 57.0
RcHm_v2.0_Chr1g0370441 Rosa chinensis HOM05D007537 ORTHO05D009602 3.0e-93 346.3 395 51.1
PSO384G1417 Papaver somniferum HOM05D007537 ORTHO05D009602 1.8e-90 337.0 426 49.8
LjContig00357g0012610 Lotus japonicus HOM05D007537 ORTHO05D009602 4.1e-90 335.9 356 54.5
Ciclev10031789m.g Citrus clementina HOM05D007537 ORTHO05D009602 1.2e-89 334.3 396 52.5
DCAR_011821 Daucus carota HOM05D007537 ORTHO05D009602 1.2e-89 334.3 366 52.7
Hund13875 Selenicereus undatus HOM05D007537 ORTHO05D009602 1.2e-89 334.3 407 51.6
Ca_05971_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 5.9e-89 332.0 391 52.2
Ca_05972_v3 Cicer arietinum L. HOM05D007537 ORTHO05D009602 5.9e-89 332.0 391 52.2
FAN03G1922 Fragaria x ananassa HOM05D007537 ORTHO05D009602 7.7e-89 331.6 394 51.3
PGR044G1397 Punica granatum HOM05D007537 ORTHO05D009602 7.7e-89 331.6 398 50.8
FAN01G2979 Fragaria x ananassa HOM05D007537 ORTHO05D009602 2.2e-88 330.1 400 50.8
FAN10G0956 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.1e-87 327.8 402 50.7
GSVIVG01032801001 Vitis vinifera HOM05D007537 ORTHO05D009602 1.1e-87 327.8 350 54.9
FAN06G1236 Fragaria x ananassa HOM05D007537 ORTHO05D009602 1.5e-87 327.4 398 50.8
Psat2g031640 Pisum sativum HOM05D007537 ORTHO05D009602 1.2e-86 324.3 350 52.6
Gorai.013G017500 Gossypium raimondii HOM05D007537 ORTHO05D009602 1.6e-86 323.9 393 54.5
Lsat_1_v5_gn_8_12620 Lactuca sativa HOM05D007537 ORTHO05D009602 2.7e-86 323.2 316 56.6
MSTRG.27338 Avicennia marina HOM05D007537 ORTHO05D009602 4.7e-86 322.4 388 52.3
arahy.Tifrunner.gnm1.ann1.EU49LP Arachis hypogaea HOM05D007537 ORTHO05D009602 1.2e-84 317.8 402 50.2
VMungo0647G0018 Vigna mungo HOM05D007537 ORTHO05D009602 2.0e-84 317.0 388 49.5
Medtr5g082850 Medicago truncatula HOM05D007537 ORTHO05D009602 2.6e-84 316.6 357 51.3
Phvul.008G223100 Phaseolus vulgaris HOM05D007537 ORTHO05D009602 2.6e-84 316.6 386 50.0
FvH4_7g24610 Fragaria vesca HOM05D007537 ORTHO05D009602 3.4e-84 316.2 401 49.6
ClCG07G004310 Citrullus lanatus HOM05D007537 ORTHO05D009602 8.3e-83 311.6 389 51.7
arahy.Tifrunner.gnm1.ann1.QLS93X Arachis hypogaea HOM05D007537 ORTHO05D009602 1.8e-82 310.5 412 51.0
HanXRQChr08g0221761 Helianthus annuus HOM05D007537 ORTHO05D009602 7.0e-82 308.5 304 58.9
AUR62022900 Chenopodium quinoa HOM05D007537 ORTHO05D009602 9.1e-82 308.1 397 51.1
Sp3g09450 Schrenkiella parvula HOM05D007537 ORTHO05D009602 7.2e-79 298.5 393 47.3
Thhalv10020993m.g Eutrema salsugineum HOM05D007537 ORTHO05D009602 1.2e-78 297.7 401 46.9
BcaB04g21148 Brassica carinata HOM05D007537 ORTHO05D009602 2.1e-78 297.0 392 46.9
BolC1t05333H Brassica oleracea HOM05D007537 ORTHO05D009602 2.8e-78 296.6 399 47.4
CARHR085730 Cardamine hirsuta HOM05D007537 ORTHO05D009602 2.8e-78 296.6 391 47.8
Ah.10g036610 Amaranthus hybridus HOM05D007537 ORTHO05D009602 3.6e-78 296.2 395 49.9
BcaC09g48157 Brassica carinata HOM05D007537 ORTHO05D009602 1.0e-77 294.7 399 47.4
Sed0013636 Sechium edule HOM05D007537 ORTHO05D009602 1.4e-77 294.3 388 50.3
THA.LOC104823184 Tarenaya hassleriana HOM05D007537 ORTHO05D009602 1.4e-77 294.3 357 49.6
Lalb_Chr04g0250531 Lupinus albus HOM05D007537 ORTHO05D009602 2.3e-77 293.5 381 47.8
AUR62012265 Chenopodium quinoa HOM05D007537 ORTHO05D009602 6.8e-77 292.0 421 48.2
Aa31LG3G4310 Aethionema arabicum HOM05D007537 ORTHO05D009602 1.5e-76 290.8 394 48.0
ECA233G1171 Erigeron canadensis HOM05D007537 ORTHO05D009602 2.0e-76 290.4 386 47.4
TPR.G38413 Trifolium pratense HOM05D007537 ORTHO05D009602 5.7e-76 288.9 319 52.7
Eucgr.J00197 Eucalyptus grandis HOM05D007537 ORTHO05D009602 4.9e-75 285.8 302 54.3
Dinv21742 Davidia involucrata HOM05D007537 ORTHO05D009602 6.3e-75 285.4 208 73.6
Migut.F00693 Erythranthe guttata HOM05D007537 ORTHO05D009602 8.3e-75 285.0 315 53.7
Gohir.A13G014800 Gossypium hirsutum HOM05D007537 ORTHO05D009602 1.4e-74 284.3 296 57.1
AL3G22670 Arabidopsis lyrata HOM05D007537 ORTHO05D009602 1.2e-73 281.2 395 46.8
SGA_v2.0_scaffold44G16701 Striga asiatica HOM05D007537 ORTHO05D009602 1.6e-73 280.8 393 46.1
AT3G11150 Arabidopsis thaliana HOM05D007537 ORTHO05D009602 7.8e-73 278.5 389 45.8
MBI03_g40958_MAGBIO Magnolia biondii HOM05D007537 ORTHO05D009602 1.5e-71 274.2 346 49.7
Carub.0003s1045 Capsella rubella HOM05D007537 ORTHO05D009602 1.9e-71 273.9 402 45.0
BraA01t04198Z Brassica rapa HOM05D007537 ORTHO05D009602 4.4e-68 262.7 393 43.8
MELO3C026792.2 Cucumis melo HOM05D007537 ORTHO05D009602 3.6e-62 243.0 274 54.7
CsaV3_5G010250 Cucumis sativus L. HOM05D007537 ORTHO05D009602 2.2e-59 233.8 275 53.1
EL10Ac2g04847 Beta vulgaris HOM05D007537 ORTHO05D009602 8.3e-59 231.9 392 42.9
Sc10g0002440 Simmondsia chinensis HOM05D007537 ORTHO05D009602 1.2e-54 218.0 393 40.2
BcaB04g21146 Brassica carinata HOM05D007537 ORTHO05D009602 8.9e-53 211.8 280 47.5
CSS0044280 Camellia sinensis var. sinensis HOM05D007537 ORTHO05D009602 3.3e-47 193.4 118 82.2
Atru.chr12.52 Acer truncatum HOM05D007537 ORTHO05D009602 8.9e-45 185.3 316 41.8
Oeu004692.1 Olea europaea HOM05D007537 ORTHO05D009602 9.0e-37 158.7 216 48.6
HPP92_007582 Vanilla planifolia HOM05D007537 ORTHO05D009602 9.0e-37 158.7 389 36.8
Os01g0830500 Oryza sativa ssp. japonica HOM05D007537 ORTHO05D009602 4.2e-34 149.8 362 34.5
Glyma.14G058602 Glycine max HOM05D007537 ORTHO05D009602 6.6e-32 142.5 197 47.7
MD01G1154400 Malus domestica HOM05D007537 ORTHO05D009602 4.8e-30 136.3 146 53.4
ATR0681G199 Amborella trichopoda HOM05D007537 ORTHO05D009602 3.3e-23 113.6 393 31.3
Oeu004690.1 Olea europaea HOM05D007537 ORTHO05D009602 5.3e-21 106.3 114 57.0
SEGI_28444 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 5.1e-16 89.7 398 26.1
SEGI_29994 Sequoiadendron giganteum HOM05D007537 ORTHO05D008256 5.1e-16 89.7 398 26.1
SEGI_01266 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 1.9e-10 71.2 390 25.1
CSS0014632 Camellia sinensis var. sinensis HOM05D006831 ORTHO05D008256 1.6e-09 68.2 321 26.8
Nn6g35309 Nelumbo nucifera HOM05D006831 ORTHO05D008256 1.0e-08 65.5 345 24.3
SEGI_41305 Sequoiadendron giganteum HOM05D007537 ORTHO05D009602 1.0e-08 65.5 388 23.7
MD01G1154300 Malus domestica HOM05D007537 ORTHO05D009602 2.3e-08 64.3 99 54.5
DCAR_016191 Daucus carota HOM05D006831 ORTHO05D008256 3.9e-08 63.5 312 24.4
Sabra01G0151300 Salix brachista HOM05D006831 ORTHO05D008256 5.1e-08 63.2 345 25.2
MSTRG.11030 Avicennia marina HOM05D006831 ORTHO05D008256 6.7e-08 62.8 342 26.3
Migut.N00752 Erythranthe guttata HOM05D000018 ORTHO05D001172 8.7e-08 62.4 251 26.3
Pp3c9_24710 Physcomitrium patens HOM05D000018 ORTHO05D311051 1.1e-07 62.0 245 22.9
QL05p020342 Quercus lobata HOM05D006831 ORTHO05D008256 3.3e-07 60.5 336 23.8
Sabra03G0073700 Salix brachista HOM05D000206 ORTHO05D002863 9.7e-07 58.9 232 25.0
CANSAT56G0873 Cannabis sativa HOM05D006831 ORTHO05D008256 1.3e-06 58.5 310 22.3
Rhsim08G0227100 Rhododendron simsii HOM05D006831 ORTHO05D008256 1.3e-06 58.5 335 25.4
vmacro18857 Vaccinium macrocarpon HOM05D006831 ORTHO05D008256 1.3e-06 58.5 343 24.2
FAN02G3719 Fragaria x ananassa HOM05D006831 ORTHO05D008256 2.2e-06 57.8 334 23.4
Sed0026254 Sechium edule HOM05D000858 ORTHO05D001578 2.2e-06 57.8 277 22.4
Sc08g0000200 Simmondsia chinensis HOM05D000018 ORTHO05D001172 2.2e-06 57.8 250 25.2
arahy.Tifrunner.gnm1.ann1.BL6FL8 Arachis hypogaea HOM05D000018 ORTHO05D000187 2.8e-06 57.4 281 25.3
DCAR_010021 Daucus carota HOM05D000018 ORTHO05D001766 2.8e-06 57.4 233 23.2
Lj5A54G57 Lonicera japonica HOM05D006831 ORTHO05D008256 2.8e-06 57.4 350 24.6
GSVIVG01021468001 Vitis vinifera HOM05D000858 ORTHO05D001578 4.8e-06 56.6 282 25.5
CAN.G1143.6 Capsicum annuum HOM05D006831 ORTHO05D008256 6.3e-06 56.2 344 23.3
Gorai.006G092800 Gossypium raimondii HOM05D000858 ORTHO05D001578 6.3e-06 56.2 270 24.8
Aqoxy7G01449 Aquilegia oxysepala HOM05D006831 ORTHO05D008256 8.2e-06 55.8 332 24.1
arahy.Tifrunner.gnm1.ann1.ZG0GPL Arachis hypogaea HOM05D000018 ORTHO05D001766 8.2e-06 55.8 218 25.7
BcaB04g19016 Brassica carinata HOM05D000018 ORTHO05D001172 8.2e-06 55.8 234 25.6
Hma1.2p1_0584F.1_g183180 Hydrangea macrophylla HOM05D000018 ORTHO05D001172 8.2e-06 55.8 261 23.4
Sopen03g039800 Solanum pennellii HOM05D006831 ORTHO05D008256 8.2e-06 55.8 326 23.3


User provided reference genes

Program Settings