Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001435 Camellia sinensis var. sinensis HOM05D004221 ORTHO05D004998 2.7e-65 251.9 132 100.0
Actinidia04331 Actinidia chinensis HOM05D004221 ORTHO05D004998 6.0e-57 224.2 131 87.8
Actinidia04067 Actinidia chinensis HOM05D004221 ORTHO05D004998 3.9e-56 221.5 131 87.8
Sed0003164 Sechium edule HOM05D004221 ORTHO05D004998 8.7e-56 220.3 131 85.5
Hund24383 Selenicereus undatus HOM05D004221 ORTHO05D004998 1.5e-55 219.5 122 90.2
COL.COLO4_33086 Corchorus olitorius HOM05D004221 ORTHO05D004998 3.3e-55 218.4 131 83.2
Potri.005G090100 Populus trichocarpa HOM05D004221 ORTHO05D004998 7.4e-55 217.2 130 82.3
AUR62032953 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.3e-54 216.5 131 80.9
Thecc.02G156600 Theobroma cacao HOM05D004221 ORTHO05D004998 1.3e-54 216.5 131 84.7
Rhsim09G0069500 Rhododendron simsii HOM05D004221 ORTHO05D004998 6.2e-54 214.2 130 84.6
Cc00_g07040 Coffea canephora HOM05D004221 ORTHO05D004998 8.1e-54 213.8 129 86.0
Hma1.2p1_0513F.1_g169420 Hydrangea macrophylla HOM05D004221 ORTHO05D004998 1.1e-53 213.4 130 83.8
Cpa.g.sc60.76 Carica papaya HOM05D004221 ORTHO05D004998 1.8e-53 212.6 131 79.4
Nn3g18605 Nelumbo nucifera HOM05D004221 ORTHO05D004998 1.8e-53 212.6 131 84.0
PGR044G1895 Punica granatum HOM05D004221 ORTHO05D004998 1.8e-53 212.6 130 83.8
vmacro15987 Vaccinium macrocarpon HOM05D004221 ORTHO05D004998 2.4e-53 212.2 130 85.4
Dinv17642 Davidia involucrata HOM05D004221 ORTHO05D004998 3.1e-53 211.8 131 85.5
Gohir.A01G012400 Gossypium hirsutum HOM05D004221 ORTHO05D004998 3.1e-53 211.8 131 80.2
Lj3A847T45 Lonicera japonica HOM05D004221 ORTHO05D004998 6.9e-53 210.7 123 86.2
TAR629G0713 Trochodendron aralioides HOM05D004221 ORTHO05D004998 9.0e-53 210.3 131 80.9
Gorai.002G015400 Gossypium raimondii HOM05D004221 ORTHO05D004998 1.2e-52 209.9 131 80.2
Nitab4.5_0000069g0160 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.2e-52 209.9 131 84.7
Nitab4.5_0013217g0020 Nicotiana tabacum HOM05D004221 ORTHO05D004998 1.2e-52 209.9 131 84.7
ClCG01G008100 Citrullus lanatus HOM05D004221 ORTHO05D004998 1.5e-52 209.5 133 82.0
Gohir.D01G013600 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.5e-52 209.5 131 79.4
TAR629G3528 Trochodendron aralioides HOM05D004221 ORTHO05D004998 1.5e-52 209.5 131 80.9
Cfa008767 Carpinus fangiana HOM05D004221 ORTHO05D004998 2.0e-52 209.1 131 82.4
AUR62017728 Chenopodium quinoa HOM05D004221 ORTHO05D004998 2.0e-52 209.1 131 80.2
DCAR_023468 Daucus carota HOM05D004221 ORTHO05D004998 2.0e-52 209.1 132 83.3
EL10Ac9g22978 Beta vulgaris HOM05D004221 ORTHO05D004998 2.6e-52 208.8 131 80.2
CAN.G282.46 Capsicum annuum HOM05D004221 ORTHO05D004998 2.6e-52 208.8 118 89.0
Solyc01g008270.3 Solanum lycopersicum HOM05D004221 ORTHO05D004998 2.6e-52 208.8 118 89.0
Sopen01g003790 Solanum pennellii HOM05D004221 ORTHO05D004998 2.6e-52 208.8 118 89.0
Duzib132G0203 Durio zibethinus HOM05D004221 ORTHO05D004998 3.4e-52 208.4 123 83.7
Manes.11G108400 Manihot esculenta HOM05D004221 ORTHO05D004998 3.4e-52 208.4 131 79.4
Duzib132G0545 Durio zibethinus HOM05D004221 ORTHO05D004998 7.6e-52 207.2 123 82.9
Duzib132G0858 Durio zibethinus HOM05D004221 ORTHO05D004998 7.6e-52 207.2 123 82.9
CsaV3_5G020730 Cucumis sativus L. HOM05D004221 ORTHO05D004998 9.9e-52 206.8 134 79.9
PGSC0003DMG400016397 Solanum tuberosum HOM05D004221 ORTHO05D004998 9.9e-52 206.8 118 88.1
HanXRQChr04g0111871 Helianthus annuus HOM05D004221 ORTHO05D004998 1.3e-51 206.5 131 82.4
THA.LOC104800677 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.3e-51 206.5 115 87.8
CiPaw.06G062100 Carya illinoinensis HOM05D004221 ORTHO05D004998 1.7e-51 206.1 124 83.1
Duzib052G1226 Durio zibethinus HOM05D004221 ORTHO05D004998 1.7e-51 206.1 131 79.4
MSTRG.13679 Avicennia marina HOM05D004221 ORTHO05D004998 2.2e-51 205.7 115 89.6
Lsat_1_v5_gn_4_64581 Lactuca sativa HOM05D004221 ORTHO05D004998 3.8e-51 204.9 137 80.3
Eucgr.J00883 Eucalyptus grandis HOM05D004221 ORTHO05D004998 4.9e-51 204.5 117 87.2
PSO017G5121 Papaver somniferum HOM05D004221 ORTHO05D004998 8.4e-51 203.8 114 88.6
PSO170G6579 Papaver somniferum HOM05D004221 ORTHO05D004998 8.4e-51 203.8 114 88.6
Potri.007G074042 Populus trichocarpa HOM05D004221 ORTHO05D004998 1.1e-50 203.4 130 76.2
THA.LOC104818379 Tarenaya hassleriana HOM05D004221 ORTHO05D004998 1.4e-50 203.0 115 87.0
Migut.E00685 Erythranthe guttata HOM05D004221 ORTHO05D004998 2.4e-50 202.2 115 86.1
Sabra07G0062100 Salix brachista HOM05D004221 ORTHO05D004998 3.2e-50 201.8 132 77.3
CANSAT78G1084 Cannabis sativa HOM05D004221 ORTHO05D004998 5.5e-50 201.1 131 80.2
Ciclev10032992m.g Citrus clementina HOM05D004221 ORTHO05D004998 5.5e-50 201.1 130 79.2
HPP92_005060 Vanilla planifolia HOM05D004221 ORTHO05D004998 7.1e-50 200.7 125 80.0
GSVIVG01026144001 Vitis vinifera HOM05D004221 ORTHO05D004998 7.1e-50 200.7 111 91.0
Lalb_Chr06g0163921 Lupinus albus HOM05D004221 ORTHO05D004998 9.3e-50 200.3 131 80.2
Aa31LG11G2750 Aethionema arabicum HOM05D004221 ORTHO05D004998 1.6e-49 199.5 115 85.2
ECA232G2799 Erigeron canadensis HOM05D004221 ORTHO05D004998 3.5e-49 198.4 124 79.8
AT5G23290 Arabidopsis thaliana HOM05D004221 ORTHO05D004998 4.6e-49 198.0 115 84.3
Carub.0006s2106 Capsella rubella HOM05D004221 ORTHO05D004998 4.6e-49 198.0 115 84.3
CARHR190250 Cardamine hirsuta HOM05D004221 ORTHO05D004998 7.9e-49 197.2 115 84.3
SGA_v2.0_scaffold256G45657 Striga asiatica HOM05D004221 ORTHO05D004998 7.9e-49 197.2 114 85.1
Sabra05G0074200 Salix brachista HOM05D004221 ORTHO05D004998 1.3e-48 196.4 170 62.9
AL6G34550 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.8e-48 196.1 115 83.5
arahy.Tifrunner.gnm1.ann1.8BKN44 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-48 196.1 114 86.0
arahy.Tifrunner.gnm1.ann1.G8X8S8 Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-48 196.1 114 86.0
arahy.Tifrunner.gnm1.ann1.VLL77W Arachis hypogaea HOM05D004221 ORTHO05D004998 1.8e-48 196.1 114 86.0
ATR0618G284 Amborella trichopoda HOM05D004221 ORTHO05D004998 2.3e-48 195.7 111 89.2
BcaC04g23487 Brassica carinata HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
A06p34250 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
C07p44270 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
C09p07830 Brassica napus HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
BolC7t44950H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
BolC9t53699H Brassica oleracea HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
BraA06t26357Z Brassica rapa HOM05D004221 ORTHO05D004998 2.3e-48 195.7 115 83.5
MD13G1003600 Malus domestica HOM05D004221 ORTHO05D004998 2.3e-48 195.7 116 84.5
Sp2g23860 Schrenkiella parvula HOM05D004221 ORTHO05D004998 3.0e-48 195.3 116 83.6
Haze_11779 Corylus avellana HOM05D004221 ORTHO05D004998 3.9e-48 194.9 163 66.9
MD16G1003800 Malus domestica HOM05D004221 ORTHO05D004998 3.9e-48 194.9 116 82.8
BcaB04g19880 Brassica carinata HOM05D004221 ORTHO05D004998 5.1e-48 194.5 115 82.6
Thhalv10005074m.g Eutrema salsugineum HOM05D004221 ORTHO05D004998 5.1e-48 194.5 115 82.6
Atru.chr11.1114 Acer truncatum HOM05D004221 ORTHO05D004998 6.7e-48 194.1 115 82.6
Prupe.1G348800 Prunus persica HOM05D004221 ORTHO05D004998 1.5e-47 193.0 116 82.8
Aqoxy3G04291 Aquilegia oxysepala HOM05D004221 ORTHO05D004998 1.9e-47 192.6 114 81.6
SalBow2G0865 Salvia bowleyana HOM05D004221 ORTHO05D004998 1.9e-47 192.6 115 82.6
CDE02G2963 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.5e-47 192.2 114 82.5
RcHm_v2.0_Chr2g0169341 Rosa chinensis HOM05D004221 ORTHO05D004998 2.5e-47 192.2 121 79.3
RcHm_v2.0_Chr6g0253901 Rosa chinensis HOM05D004221 ORTHO05D004998 2.5e-47 192.2 121 79.3
Zm00001eb045320 Zea mays HOM05D004221 ORTHO05D004998 2.5e-47 192.2 115 83.5
A09p07020 Brassica napus HOM05D004221 ORTHO05D004998 3.3e-47 191.8 124 77.4
BraA09t36350Z Brassica rapa HOM05D004221 ORTHO05D004998 3.3e-47 191.8 124 77.4
Lj5g0004809 Lotus japonicus HOM05D004221 ORTHO05D004998 3.3e-47 191.8 128 76.6
TWI77G0364 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 3.3e-47 191.8 131 75.6
Os10g0488100 Oryza sativa ssp. japonica HOM05D004221 ORTHO05D004998 4.3e-47 191.4 115 81.7
RcHm_v2.0_Chr1g0343381 Rosa chinensis HOM05D004221 ORTHO05D004998 4.3e-47 191.4 121 79.3
RcHm_v2.0_Chr4g0389221 Rosa chinensis HOM05D004221 ORTHO05D004998 5.6e-47 191.0 121 79.3
Sc26g0002050 Simmondsia chinensis HOM05D004221 ORTHO05D004998 7.4e-47 190.7 114 83.3
RcHm_v2.0_Chr4g0446851 Rosa chinensis HOM05D004221 ORTHO05D004998 1.6e-46 189.5 121 78.5
TWI74G0522 Tripterygium wilfordii HOM05D004221 ORTHO05D004998 2.8e-46 188.7 131 74.0
FAN07G0046 Fragaria x ananassa HOM05D004221 ORTHO05D004998 6.2e-46 187.6 121 76.9
RcHm_v2.0_Chr5g0039981 Rosa chinensis HOM05D004221 ORTHO05D004998 6.2e-46 187.6 121 77.7
unitig_699.g19553 Utricularia gibba HOM05D004221 ORTHO05D004998 6.2e-46 187.6 121 78.5
FvH4_4g37090 Fragaria vesca HOM05D004221 ORTHO05D004998 8.2e-46 187.2 121 76.0
MBI06_g27498_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 8.2e-46 187.2 121 79.3
RcHm_v2.0_Chr4g0391031 Rosa chinensis HOM05D004221 ORTHO05D004998 1.1e-45 186.8 121 76.9
FAN12G1261 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.4e-45 186.4 114 78.9
RcHm_v2.0_Chr5g0070771 Rosa chinensis HOM05D004221 ORTHO05D004998 1.4e-45 186.4 121 76.9
Glyma.20G103300 Glycine max HOM05D004221 ORTHO05D004998 1.8e-45 186.0 134 74.6
RcHm_v2.0_Chr4g0391701 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-45 186.0 121 77.7
FAN17G0592 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.4e-45 185.7 121 75.2
FAN03G0273 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-44 183.3 121 73.6
FAN10G4155 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-44 183.3 121 72.7
FAN23G3078 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.2e-44 183.3 121 73.6
AL2G24680 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-44 183.0 110 80.0
AL8G16830 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 1.5e-44 183.0 110 80.0
CDE04G0710 Ceratophyllum demersum HOM05D004221 ORTHO05D004998 2.0e-44 182.6 141 68.8
FAN15G1018 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.0e-44 182.6 121 73.6
Medtr1g114500 Medicago truncatula HOM05D004221 ORTHO05D004998 2.0e-44 182.6 131 73.3
Ca_11255_v3 Cicer arietinum L. HOM05D004221 ORTHO05D004998 4.5e-44 181.4 131 74.8
FAN07G1220 Fragaria x ananassa HOM05D004221 ORTHO05D004998 2.9e-43 178.7 120 73.3
Psat6g233960 Pisum sativum HOM05D004221 ORTHO05D004998 2.9e-43 178.7 131 71.8
Glyma.10G286000 Glycine max HOM05D004221 ORTHO05D004998 4.9e-43 177.9 114 76.3
VMungo0720G0328 Vigna mungo HOM05D004221 ORTHO05D004998 4.9e-43 177.9 114 76.3
TPR.G4058 Trifolium pratense HOM05D004221 ORTHO05D004998 1.9e-42 176.0 131 71.8
Phvul.007G014900 Phaseolus vulgaris HOM05D004221 ORTHO05D004998 2.5e-42 175.6 114 75.4
SGA_v2.0_scaffold358G49836 Striga asiatica HOM05D004221 ORTHO05D004998 1.3e-40 169.9 151 61.6
TAR371G0536 Trochodendron aralioides HOM05D004221 ORTHO05D004998 2.3e-40 169.1 125 72.0
FAN10G1077 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.5e-39 166.4 121 68.6
FAN03G3278 Fragaria x ananassa HOM05D004221 ORTHO05D004998 1.9e-39 166.0 121 68.6
Ah.01g012690 Amaranthus hybridus HOM05D004221 ORTHO05D004998 4.3e-39 164.9 96 86.5
Peaxi162Scf00021g02223 Petunia axillaris HOM05D004221 ORTHO05D004998 1.3e-38 163.3 118 74.6
FAN17G2528 Fragaria x ananassa HOM05D004221 ORTHO05D004998 4.8e-38 161.4 121 66.9
SEGI_18337 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 4.8e-38 161.4 131 62.6
AUR62032946 Chenopodium quinoa HOM05D004221 ORTHO05D004998 1.1e-37 160.2 110 74.5
Mapoly0041s0007 Marchantia polymorpha HOM05D004221 ORTHO05D004998 1.2e-36 156.8 130 60.8
Pp3c1_32320 Physcomitrium patens HOM05D004221 ORTHO05D004998 1.2e-36 156.8 115 69.6
SMO114G0084 Selaginella moellendorffii HOM05D004221 ORTHO05D004998 4.5e-36 154.8 115 60.9
Oeu013195.1 Olea europaea HOM05D004221 ORTHO05D004998 7.6e-36 154.1 87 89.7
AagrBONN_evm.TU.Sc2ySwM_117.4013 Anthoceros agrestis HOM05D004221 ORTHO05D004998 8.5e-35 150.6 115 60.9
Oeu041209.1 Olea europaea HOM05D004221 ORTHO05D004998 3.0e-32 142.1 104 77.9
SHI21211 Sapria himalayana HOM05D004221 ORTHO05D004998 1.1e-31 140.2 200 43.5
MELO3C000273.2 Cucumis melo HOM05D004221 ORTHO05D004998 2.9e-27 125.6 70 88.6
Lj9A327T34 Lonicera japonica HOM05D004221 ORTHO05D004998 4.2e-26 121.7 77 80.5
RcHm_v2.0_Chr5g0067401 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-25 118.6 77 79.2
RcHm_v2.0_Chr6g0266371 Rosa chinensis HOM05D004221 ORTHO05D004998 3.6e-25 118.6 77 79.2
RcHm_v2.0_Chr3g0478071 Rosa chinensis HOM05D004221 ORTHO05D004998 1.8e-24 116.3 77 77.9
MELO3C033736.2 Cucumis melo HOM05D004221 ORTHO05D004998 8.8e-24 114.0 64 89.1
CBR_g19844 Chara braunii HOM05D002142 ORTHO05D001189 1.1e-23 113.6 115 46.1
MCO07G569 Micromonas commoda HOM05D004221 ORTHO05D004998 2.0e-23 112.8 117 45.3
SEGI_37490 Sequoiadendron giganteum HOM05D004221 ORTHO05D004998 6.3e-22 107.8 61 78.7
RcHm_v2.0_Chr6g0274601 Rosa chinensis HOM05D004221 ORTHO05D004998 5.3e-21 104.8 71 76.1
Gorai.002G209700 Gossypium raimondii HOM05D004221 ORTHO05D004998 5.9e-20 101.3 59 79.7
Gohir.D01G168833 Gossypium hirsutum HOM05D004221 ORTHO05D004998 7.7e-20 100.9 59 79.7
Sed0018067 Sechium edule HOM05D004221 ORTHO05D004998 8.5e-19 97.4 70 72.9
Gohir.A01G178033 Gossypium hirsutum HOM05D004221 ORTHO05D004998 1.6e-17 93.2 59 72.9
A02p41030 Brassica napus HOM05D004221 ORTHO05D004998 1.5e-15 86.7 51 76.5
MBI19_g48155_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 1.5e-15 86.7 67 68.7
PRCOL_00006790 Prasinoderma coloniale HOM05D004221 ORTHO05D004998 2.6e-15 85.9 117 35.9
MBI19_g31737_MAGBIO Magnolia biondii HOM05D004221 ORTHO05D004998 9.7e-15 84.0 67 67.2
Cre12.g523150 Chlamydomonas reinhardtii HOM05D004221 ORTHO05D004998 3.7e-14 82.0 108 37.0
AL1G29290 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.8e-11 72.0 49 73.5
AL8G24780 Arabidopsis lyrata HOM05D004221 ORTHO05D004998 3.8e-11 72.0 49 73.5
SalBow3G1738 Salvia bowleyana HOM05D004221 ORTHO05D004998 5.0e-11 71.6 47 70.2
SalBow6G4331 Salvia bowleyana HOM05D004221 ORTHO05D004998 6.1e-09 64.7 47 72.3


User provided reference genes

Program Settings