Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-181 639.8 328 100.0
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 3.3e-157 558.5 323 89.5
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.2e-123 445.7 327 72.5
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 3.2e-123 445.7 328 70.7
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 5.4e-123 444.9 323 72.1
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.1e-119 433.0 323 71.8
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.5e-117 426.8 322 68.3
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 3.2e-115 419.1 325 69.8
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 1.3e-113 413.7 324 69.4
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 2.3e-113 412.9 326 67.8
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.1e-112 410.6 293 72.4
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 1.9e-112 409.8 292 70.9
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.9e-112 409.8 292 70.9
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 8.1e-111 404.4 334 67.1
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 5.2e-110 401.7 292 71.6
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 8.9e-110 401.0 295 70.2
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.2e-109 400.6 292 70.5
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.2e-109 400.6 327 66.1
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.5e-109 400.2 288 71.2
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 3.4e-109 399.1 326 65.3
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 5.8e-109 398.3 326 65.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.2e-108 396.4 292 70.5
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.1e-107 394.0 327 64.5
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 1.4e-107 393.7 289 70.2
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.2e-106 390.6 286 69.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 1.6e-106 390.2 326 66.9
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.6e-106 388.7 323 64.7
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 7.8e-106 387.9 296 68.6
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 7.8e-106 387.9 292 68.8
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.3e-105 387.1 284 68.0
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 3.9e-105 385.6 296 68.2
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 5.1e-105 385.2 322 64.0
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 5.1e-105 385.2 299 66.9
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.1e-104 384.0 294 68.0
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.6e-103 379.0 288 67.7
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 8.1e-103 377.9 299 65.2
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.4e-102 377.1 297 68.4
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 3.1e-102 375.9 333 64.9
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 5.2e-102 375.2 288 67.4
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 5.2e-102 375.2 298 65.1
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 6.8e-102 374.8 280 67.1
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 6.8e-102 374.8 328 64.6
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 6.8e-102 374.8 360 58.1
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 8.9e-102 374.4 264 70.5
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.2e-101 374.0 288 68.1
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.5e-101 373.6 280 67.1
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 2.6e-101 372.9 288 68.4
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 3.4e-101 372.5 292 67.5
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 9.9e-101 370.9 288 67.0
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.3e-100 370.5 336 59.8
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.2e-100 369.8 285 67.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 4.9e-100 368.6 277 68.2
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 4.9e-100 368.6 285 67.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 6.4e-100 368.2 327 59.9
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 6.4e-100 368.2 280 67.9
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 8.4e-100 367.9 293 65.9
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 5.4e-99 365.2 289 64.7
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 9.3e-99 364.4 202 85.1
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.0e-97 360.9 274 68.2
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.3e-97 360.5 274 68.2
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 1.7e-97 360.1 328 57.9
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 1.7e-97 360.1 287 64.8
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 3.0e-97 359.4 304 61.5
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 5.1e-97 358.6 297 63.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 6.6e-97 358.2 292 64.7
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 1.9e-96 356.7 272 65.4
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 1.9e-96 356.7 294 62.6
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 2.5e-96 356.3 273 67.0
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 7.3e-96 354.8 286 65.7
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 7.3e-96 354.8 286 65.7
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 1.6e-95 353.6 283 65.7
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 3.6e-95 352.4 273 66.7
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 3.6e-95 352.4 273 65.6
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 6.2e-95 351.7 285 64.6
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 6.2e-95 351.7 253 68.8
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 3.1e-94 349.4 289 60.6
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 3.1e-94 349.4 202 80.7
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 1.2e-93 347.4 303 61.4
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 2.6e-93 346.3 334 58.4
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.6e-93 346.3 286 59.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 4.5e-93 345.5 289 61.6
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 4.5e-93 345.5 288 62.2
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 4.5e-93 345.5 340 58.8
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 5.8e-93 345.1 285 62.5
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 5.8e-93 345.1 308 60.1
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 9.9e-93 344.4 338 57.7
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 1.3e-92 344.0 201 79.6
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 1.7e-92 343.6 287 62.7
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 3.8e-92 342.4 287 62.0
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.1e-91 340.9 303 60.7
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.9e-91 340.1 282 62.8
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.4e-91 338.6 307 60.6
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 2.7e-90 336.3 288 61.8
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 3.5e-90 335.9 306 58.2
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 3.5e-90 335.9 226 72.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 4.6e-90 335.5 266 63.9
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.9e-90 334.7 301 58.5
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.0e-89 334.3 286 61.2
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.3e-89 334.0 298 59.1
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.3e-89 334.0 291 62.5
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.3e-89 334.0 291 59.8
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.3e-89 333.2 282 61.7
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 2.3e-89 333.2 282 61.7
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-88 330.9 303 58.4
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.1e-88 330.9 282 62.4
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 3.3e-88 329.3 285 61.8
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 4.3e-88 328.9 282 61.3
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 5.6e-88 328.6 286 57.7
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 7.4e-88 328.2 283 60.1
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 9.6e-88 327.8 275 62.9
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 9.6e-88 327.8 283 63.3
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 9.6e-88 327.8 280 61.4
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.3e-87 327.4 274 60.9
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 1.3e-87 327.4 286 60.8
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 3.6e-87 325.9 278 61.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 8.1e-87 324.7 297 58.9
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 1.1e-86 324.3 278 61.2
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-86 323.2 275 61.8
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-86 323.2 275 61.8
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 3.1e-86 322.8 309 59.2
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 4.0e-86 322.4 285 60.0
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 6.9e-86 321.6 278 60.8
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 2.0e-85 320.1 285 59.6
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.5e-85 318.9 275 61.1
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.5e-85 318.9 275 60.7
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.5e-85 318.9 275 60.7
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 4.5e-85 318.9 286 56.3
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 7.6e-85 318.2 303 55.1
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 9.9e-85 317.8 284 56.3
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 4.2e-83 312.4 291 58.1
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 2.1e-82 310.1 202 76.7
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 2.3e-81 306.6 206 65.0
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 4.5e-77 292.4 209 70.3
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.9e-75 287.0 270 54.1
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 5.5e-75 285.4 418 42.1
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 8.7e-73 278.1 298 49.3
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 2.5e-67 260.0 280 53.2
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 1.0e-65 254.6 202 65.3
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.3e-60 237.7 163 70.6
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 9.7e-40 168.3 216 39.8
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.8e-38 164.1 217 41.5
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 2.3e-33 147.1 101 70.3
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 8.3e-31 138.7 90 72.2
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 9.1e-30 135.2 99 68.7
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-29 134.8 123 57.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.2e-23 114.0 156 44.2
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 2.4e-22 110.5 126 50.8
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.3e-17 94.0 85 61.2
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 3.2e-14 83.6 218 28.4
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.7e-13 80.5 53 69.8
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 2.7e-13 80.5 172 33.1
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 5.6e-11 72.8 109 44.0


User provided reference genes

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