Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001398 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 7.2e-62 240.4 117 100.0
CSS0043784 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.7e-43 177.6 98 87.8
CSS0038565 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.7e-42 176.0 98 86.7
CSS0016383 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.8e-42 174.5 98 86.7
Aqoxy2G03656 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.1e-41 173.3 98 84.7
Hma1.2p1_0886F.1_g232710 Hydrangea macrophylla HOM05D003336 ORTHO05D003807 2.4e-41 172.2 98 84.7
Cc04_g08950 Coffea canephora HOM05D003336 ORTHO05D003807 5.4e-41 171.0 97 86.6
Eucgr.H01866 Eucalyptus grandis HOM05D003336 ORTHO05D003807 5.4e-41 171.0 98 84.7
Eucgr.A00092 Eucalyptus grandis HOM05D003336 ORTHO05D003807 7.0e-41 170.6 98 83.7
Eucgr.A00283 Eucalyptus grandis HOM05D003336 ORTHO05D003807 7.0e-41 170.6 98 83.7
Eucgr.L00050 Eucalyptus grandis HOM05D003336 ORTHO05D003807 7.0e-41 170.6 98 83.7
Sc25g0002520 Simmondsia chinensis HOM05D003336 ORTHO05D003807 7.0e-41 170.6 98 83.7
QL07p004835 Quercus lobata HOM05D003336 ORTHO05D003807 9.1e-41 170.2 98 84.7
Rhsim09G0026500 Rhododendron simsii HOM05D003336 ORTHO05D003807 9.1e-41 170.2 98 85.7
RhsimUnG0196100 Rhododendron simsii HOM05D003336 ORTHO05D003807 9.1e-41 170.2 98 85.7
HPP92_018106 Vanilla planifolia HOM05D003336 ORTHO05D003807 1.6e-40 169.5 98 83.7
Lsat_1_v5_gn_3_6100 Lactuca sativa HOM05D003336 ORTHO05D003807 3.5e-40 168.3 98 81.6
MSTRG.9761 Avicennia marina HOM05D003336 ORTHO05D003807 4.5e-40 167.9 98 83.7
CANSAT78G0594 Cannabis sativa HOM05D003336 ORTHO05D003807 4.5e-40 167.9 98 83.7
PSO210G2800 Papaver somniferum HOM05D003336 ORTHO05D003807 4.5e-40 167.9 98 82.7
Solyc02g068750.1 Solanum lycopersicum HOM05D003336 ORTHO05D003807 4.5e-40 167.9 97 83.5
Sopen02g017920 Solanum pennellii HOM05D003336 ORTHO05D003807 4.5e-40 167.9 97 83.5
GSVIVG01006062001 Vitis vinifera HOM05D003336 ORTHO05D003807 4.5e-40 167.9 98 82.7
ATR0796G111 Amborella trichopoda HOM05D003336 ORTHO05D003807 7.7e-40 167.2 98 81.6
Migut.O00911 Erythranthe guttata HOM05D003336 ORTHO05D003807 7.7e-40 167.2 98 82.7
MD17G1219400 Malus domestica HOM05D003336 ORTHO05D003807 7.7e-40 167.2 100 80.0
Os05g0194600 Oryza sativa ssp. japonica HOM05D003336 ORTHO05D003807 7.7e-40 167.2 98 82.7
THA.LOC104806347 Tarenaya hassleriana HOM05D003336 ORTHO05D003807 7.7e-40 167.2 98 82.7
Migut.N03104 Erythranthe guttata HOM05D003336 ORTHO05D003807 1.0e-39 166.8 98 81.6
Zm00001eb283430 Zea mays HOM05D003336 ORTHO05D003807 1.0e-39 166.8 98 81.6
Zm00001eb016890 Zea mays HOM05D003336 ORTHO05D003807 1.3e-39 166.4 98 81.6
Zm00001eb121330 Zea mays HOM05D003336 ORTHO05D003807 1.3e-39 166.4 98 81.6
Zm00001eb336440 Zea mays HOM05D003336 ORTHO05D003807 1.3e-39 166.4 98 81.6
Zm00001eb398700 Zea mays HOM05D003336 ORTHO05D003807 1.3e-39 166.4 98 81.6
Aqoxy7G02152 Aquilegia oxysepala HOM05D003336 ORTHO05D003807 1.7e-39 166.0 99 78.8
Ciclev10001634m.g Citrus clementina HOM05D003336 ORTHO05D003807 1.7e-39 166.0 98 81.6
Oeu061601.1 Olea europaea HOM05D003336 ORTHO05D003807 1.7e-39 166.0 98 81.6
PGSC0003DMG400010450 Solanum tuberosum HOM05D003336 ORTHO05D003807 1.7e-39 166.0 97 82.5
CAN.G149.29 Capsicum annuum HOM05D003336 ORTHO05D003807 2.3e-39 165.6 97 82.5
CiPaw.02G054300 Carya illinoinensis HOM05D003336 ORTHO05D003807 2.3e-39 165.6 98 80.6
TWI34G1872 Tripterygium wilfordii HOM05D003336 ORTHO05D003807 2.3e-39 165.6 98 80.6
EL10Ac3g06008 Beta vulgaris HOM05D003336 ORTHO05D003807 2.9e-39 165.2 98 81.6
Manes.04G043500 Manihot esculenta HOM05D003336 ORTHO05D003807 2.9e-39 165.2 98 81.6
SGA_v2.0_scaffold1G00608 Striga asiatica HOM05D003336 ORTHO05D003807 2.9e-39 165.2 98 80.6
MELO3C021601.2 Cucumis melo HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 81.6
FAN06G1925 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 79.6
Gohir.A02G012500 Gossypium hirsutum HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 81.6
Gorai.005G016800 Gossypium raimondii HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 81.6
SHI23517 Sapria himalayana HOM05D003336 ORTHO05D003807 3.8e-39 164.9 102 77.5
Zm00001eb007550 Zea mays HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 80.6
Zm00001eb059340 Zea mays HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 80.6
Zm00001eb376450 Zea mays HOM05D003336 ORTHO05D003807 3.8e-39 164.9 98 79.6
Atru.chr6.1778 Acer truncatum HOM05D003336 ORTHO05D003807 5.0e-39 164.5 98 81.6
CsaV3_5G026930 Cucumis sativus L. HOM05D003336 ORTHO05D003807 5.0e-39 164.5 98 81.6
Prupe.1G196300 Prunus persica HOM05D003336 ORTHO05D003807 5.0e-39 164.5 98 80.6
Sed0018746 Sechium edule HOM05D003336 ORTHO05D003807 5.0e-39 164.5 98 81.6
Duzib151G0181 Durio zibethinus HOM05D003336 ORTHO05D003807 6.6e-39 164.1 98 80.6
ECA246G0584 Erigeron canadensis HOM05D003336 ORTHO05D003807 6.6e-39 164.1 98 78.6
FAN10G0305 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.6e-39 164.1 98 79.6
FAN10G0412 Fragaria x ananassa HOM05D003336 ORTHO05D003807 6.6e-39 164.1 98 79.6
AUR62008210 Chenopodium quinoa HOM05D003336 ORTHO05D003807 8.6e-39 163.7 98 79.6
MELO3C013276.2 Cucumis melo HOM05D003336 ORTHO05D003807 8.6e-39 163.7 98 80.6
Potri.017G029200 Populus trichocarpa HOM05D003336 ORTHO05D003807 8.6e-39 163.7 98 80.6
AUR62030962 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 79.6
FvH4_3g16550 Fragaria vesca HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 79.6
FAN11G0541 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 79.6
FAN16G2332 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 79.6
FAN25G0065 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 79.6
QL10p049056 Quercus lobata HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 80.6
RcHm_v2.0_Chr1g0331181 Rosa chinensis HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 79.6
Zm00001eb324020 Zea mays HOM05D003336 ORTHO05D003807 1.1e-38 163.3 98 80.6
Carub.0007s1861 Capsella rubella HOM05D003336 ORTHO05D003807 1.5e-38 162.9 98 78.6
Gohir.D02G013300 Gossypium hirsutum HOM05D003336 ORTHO05D003807 1.5e-38 162.9 98 80.6
PGR083G1911 Punica granatum HOM05D003336 ORTHO05D003807 1.5e-38 162.9 98 79.6
AT4G22720 Arabidopsis thaliana HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 79.6
AUR62011428 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 79.6
ClCG10G008650 Citrullus lanatus HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 80.6
FAN03G2504 Fragaria x ananassa HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 79.6
Glyma.17G108000 Glycine max HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 79.6
Lj1g0015608 Lotus japonicus HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 79.6
Thecc.04G177600 Theobroma cacao HOM05D003336 ORTHO05D003807 1.9e-38 162.5 98 79.6
Phvul.006G109300 Phaseolus vulgaris HOM05D003336 ORTHO05D003807 2.5e-38 162.2 98 79.6
TAR365G0105 Trochodendron aralioides HOM05D003336 ORTHO05D003807 2.5e-38 162.2 98 80.6
FAN21G2317 Fragaria x ananassa HOM05D003336 ORTHO05D003807 3.3e-38 161.8 98 78.6
VMungo0540G1651 Vigna mungo HOM05D003336 ORTHO05D003807 3.3e-38 161.8 97 80.4
AL7G30880 Arabidopsis lyrata HOM05D003336 ORTHO05D003807 4.2e-38 161.4 98 78.6
CARHR229640 Cardamine hirsuta HOM05D003336 ORTHO05D003807 4.2e-38 161.4 98 77.6
Medtr1g090817 Medicago truncatula HOM05D003336 ORTHO05D003807 4.2e-38 161.4 98 78.6
Psat6g173800 Pisum sativum HOM05D003336 ORTHO05D003807 4.2e-38 161.4 98 78.6
TPR.G37811 Trifolium pratense HOM05D003336 ORTHO05D003807 4.2e-38 161.4 98 78.6
Ah.11g051610 Amaranthus hybridus HOM05D003336 ORTHO05D003807 7.2e-38 160.6 98 78.6
Glyma.19G252200 Glycine max HOM05D003336 ORTHO05D003807 7.2e-38 160.6 98 78.6
HanXRQChr17g0533451 Helianthus annuus HOM05D003336 ORTHO05D003807 7.2e-38 160.6 98 77.6
Thhalv10025586m.g Eutrema salsugineum HOM05D003336 ORTHO05D003807 9.5e-38 160.2 98 77.6
arahy.Tifrunner.gnm1.ann1.4MR6LE Arachis hypogaea HOM05D003336 ORTHO05D003807 1.2e-37 159.8 98 78.6
arahy.Tifrunner.gnm1.ann1.H7WPER Arachis hypogaea HOM05D003336 ORTHO05D003807 1.2e-37 159.8 98 78.6
arahy.Tifrunner.gnm1.ann1.HN7X2L Arachis hypogaea HOM05D003336 ORTHO05D003807 1.2e-37 159.8 98 78.6
Lalb_Chr18g0044261 Lupinus albus HOM05D003336 ORTHO05D003807 1.6e-37 159.5 98 77.6
Atru.chr6.1080 Acer truncatum HOM05D003336 ORTHO05D003807 2.1e-37 159.1 98 78.6
A01p13940 Brassica napus HOM05D003336 ORTHO05D003807 2.1e-37 159.1 98 77.6
BraA01t01340Z Brassica rapa HOM05D003336 ORTHO05D003807 2.1e-37 159.1 98 77.6
BolC1t01638H Brassica oleracea HOM05D003336 ORTHO05D003807 3.6e-37 158.3 98 76.5
BcaC09g51096 Brassica carinata HOM05D003336 ORTHO05D003807 4.7e-37 157.9 98 76.5
C01p16980 Brassica napus HOM05D003336 ORTHO05D003807 4.7e-37 157.9 98 76.5
SMO196G0197 Selaginella moellendorffii HOM05D003336 ORTHO05D003807 4.7e-37 157.9 98 76.5
SEGI_39923 Sequoiadendron giganteum HOM05D003336 ORTHO05D003807 4.7e-37 157.9 93 79.6
Aa31LG6G4680 Aethionema arabicum HOM05D003336 ORTHO05D003807 1.0e-36 156.8 98 75.5
BcaNung01042 Brassica carinata HOM05D003336 ORTHO05D003807 1.0e-36 156.8 98 75.5
AUR62003310 Chenopodium quinoa HOM05D003336 ORTHO05D003807 1.8e-36 156.0 93 79.6
SpUn1040_0020 Schrenkiella parvula HOM05D003336 ORTHO05D003807 2.3e-36 155.6 98 74.5
Mapoly0054s0003 Marchantia polymorpha HOM05D003336 ORTHO05D003807 3.0e-36 155.2 98 74.5
C01p17150 Brassica napus HOM05D003336 ORTHO05D003807 8.9e-36 153.7 98 75.5
BolC1t01652H Brassica oleracea HOM05D003336 ORTHO05D003807 8.9e-36 153.7 98 75.5
BcaC09g51089 Brassica carinata HOM05D003336 ORTHO05D003807 1.2e-35 153.3 98 75.5
arahy.Tifrunner.gnm1.ann1.DI9DGG Arachis hypogaea HOM05D003336 ORTHO05D003807 1.5e-35 152.9 97 76.3
arahy.Tifrunner.gnm1.ann1.UX0YUZ Arachis hypogaea HOM05D003336 ORTHO05D003807 1.3e-34 149.8 98 74.5
Pp3c8_19600 Physcomitrium patens HOM05D003336 ORTHO05D003807 3.7e-34 148.3 98 71.4
Atru.chr6.1044 Acer truncatum HOM05D003336 ORTHO05D003807 1.1e-33 146.7 91 76.9
CBR_g36984 Chara braunii HOM05D003336 ORTHO05D003807 2.4e-33 145.6 114 64.0
PRCOL_00003655 Prasinoderma coloniale HOM05D003336 ORTHO05D003807 1.7e-31 139.4 99 68.7
C01p17060 Brassica napus HOM05D003336 ORTHO05D003807 2.3e-31 139.0 98 70.4
C01p17090 Brassica napus HOM05D003336 ORTHO05D003807 2.3e-31 139.0 98 70.4
BolC1t01648H Brassica oleracea HOM05D003336 ORTHO05D003807 2.3e-31 139.0 98 70.4
C01p17110 Brassica napus HOM05D003336 ORTHO05D003807 6.6e-31 137.5 109 64.2
MCO05G700 Micromonas commoda HOM05D003336 ORTHO05D003807 1.5e-30 136.3 96 65.6
CSS0012442 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.9e-30 136.0 98 72.4
C01p17130 Brassica napus HOM05D003336 ORTHO05D003807 7.3e-30 134.0 98 70.4
BolC1t01651H Brassica oleracea HOM05D003336 ORTHO05D003807 9.5e-30 133.7 98 70.4
RcHm_v2.0_Chr1g0329821 Rosa chinensis HOM05D003336 ORTHO05D003807 3.6e-29 131.7 81 79.0
Zm00001eb191860 Zea mays HOM05D003336 ORTHO05D003807 3.6e-29 131.7 71 84.5
FAN15G0900 Fragaria x ananassa HOM05D003336 ORTHO05D003807 5.2e-28 127.9 77 77.9
BolC1t01646H Brassica oleracea HOM05D003336 ORTHO05D003807 8.3e-26 120.6 86 69.8
CSS0006022 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.2e-25 118.6 80 75.0
FAN13G1004 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.5e-22 107.1 63 77.8
Ciclev10002827m.g Citrus clementina HOM05D003336 ORTHO05D003807 2.8e-21 105.5 57 86.0
CSS0042404 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.2e-21 104.4 61 83.6
CSS0043766 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 6.2e-21 104.4 61 83.6
CSS0000567 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 1.8e-20 102.8 56 87.5
Cfa023393 Carpinus fangiana HOM05D003336 ORTHO05D003807 1.8e-20 102.8 109 51.4
Zm00001eb442100 Zea mays HOM05D003336 ORTHO05D003807 4.0e-20 101.7 98 58.2
CSS0023275 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.2e-17 92.0 56 76.8
CSS0025461 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 3.2e-17 92.0 84 59.5
Cpa.g.sc9.295 Carica papaya HOM05D003336 ORTHO05D003807 1.9e-14 82.8 44 86.4
CSS0040953 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 4.3e-14 81.6 80 57.5
Atru.chr7.305 Acer truncatum HOM05D003336 ORTHO05D003807 6.0e-08 61.2 38 76.3
CSS0049342 Camellia sinensis var. sinensis HOM05D003336 ORTHO05D003807 5.1e-07 58.2 61 55.7
Atru.chr7.310 Acer truncatum HOM05D000001 ORTHO05D009429 8.6e-07 57.4 32 81.2
Atru.chr7.309 Acer truncatum HOM05D003336 ORTHO05D003807 2.5e-06 55.8 34 76.5
FAN17G2067 Fragaria x ananassa HOM05D003336 ORTHO05D003807 9.5e-06 53.9 30 83.3


User provided reference genes

Program Settings