Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001395 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 1.1e-101 373.2 189 100.0
CSS0033511 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.5e-82 308.5 183 86.9
CSS0021579 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 5.7e-77 291.2 183 83.6
CSS0010034 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 3.6e-71 271.9 180 80.0
CSS0048670 Camellia sinensis var. sinensis HOM05D000876 ORTHO05D000285 4.7e-71 271.6 180 80.0
CSS0027428 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 2.1e-58 229.6 170 72.4
CSS0020901 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 5.1e-49 198.4 170 64.7
CSS0034175 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 5.6e-48 194.9 168 66.1
CSS0040684 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 4.2e-35 152.1 139 64.0
CSS0024396 Camellia sinensis var. sinensis HOM05D021170 ORTHO05D000285 3.1e-30 136.0 175 46.9
CANSAT11G0869 Cannabis sativa HOM05D000876 ORTHO05D000285 9.6e-16 87.8 180 31.7
CANSAT64G0985 Cannabis sativa HOM05D000876 ORTHO05D000285 9.6e-16 87.8 180 31.7
CANSAT25G2261 Cannabis sativa HOM05D000876 ORTHO05D000285 3.7e-15 85.9 180 32.2
CANSAT11G0810 Cannabis sativa HOM05D000876 ORTHO05D000285 4.8e-15 85.5 180 31.7
CANSAT21G2246 Cannabis sativa HOM05D000876 ORTHO05D000285 4.0e-14 82.4 180 32.2
CANSAT21G1745 Cannabis sativa HOM05D000876 ORTHO05D000285 6.9e-14 81.6 180 31.1
MD15G1314200 Malus domestica HOM05D000876 ORTHO05D000285 6.9e-14 81.6 171 33.3
CANSAT78G0895 Cannabis sativa HOM05D000876 ORTHO05D000285 9.0e-14 81.3 180 30.6
Prupe.5G020800 Prunus persica HOM05D000876 ORTHO05D000285 3.4e-13 79.3 171 31.6
Prupe.5G207000 Prunus persica HOM05D000876 ORTHO05D000285 3.4e-13 79.3 175 32.6
vmacro03441 Vaccinium macrocarpon HOM05D005565 ORTHO05D006950 2.5e-11 73.2 175 30.9
Hma1.2p1_0148F.1_g066070 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 1.6e-10 70.5 172 29.1
Hma1.2p1_0148F.1_g066080 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 1.6e-10 70.5 172 29.1
arahy.Tifrunner.gnm1.ann1.NV9TN2 Arachis hypogaea HOM05D000034 ORTHO05D000037 2.1e-10 70.1 170 30.6
FAN03G2155 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.1e-10 70.1 184 30.4
RcHm_v2.0_Chr4g0428601 Rosa chinensis HOM05D000876 ORTHO05D000285 2.1e-10 70.1 180 28.9
FvH4_5g23913 Fragaria vesca HOM05D000876 ORTHO05D000285 2.7e-10 69.7 172 29.1
Rhsim05G0157800 Rhododendron simsii HOM05D000876 ORTHO05D000285 2.7e-10 69.7 183 32.8
vmacro15102 Vaccinium macrocarpon HOM05D000113 ORTHO05D001798 2.7e-10 69.7 172 30.8
FAN17G2644 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.6e-10 68.9 168 28.0
FAN02G2707 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.1e-10 68.6 172 30.8
Rhsim06G0093500 Rhododendron simsii HOM05D000876 ORTHO05D000285 7.9e-10 68.2 183 32.2
vmacro00850 Vaccinium macrocarpon HOM05D002121 ORTHO05D004000 7.9e-10 68.2 174 28.2
RcHm_v2.0_Chr2g0128681 Rosa chinensis HOM05D000876 ORTHO05D000285 1.3e-09 67.4 173 28.9
FAN09G4256 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-09 67.0 171 30.4
FAN17G0428 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-09 67.0 171 30.4
RcHm_v2.0_Chr2g0103961 Rosa chinensis HOM05D000876 ORTHO05D000285 1.8e-09 67.0 167 29.3
FvH4_6g39920 Fragaria vesca HOM05D000876 ORTHO05D000285 3.0e-09 66.2 175 29.7
FvH4_7g08972 Fragaria vesca HOM05D000876 ORTHO05D000285 3.0e-09 66.2 175 29.7
FvH4_7g12221 Fragaria vesca HOM05D000876 ORTHO05D000285 3.0e-09 66.2 177 31.1
QL04p079613 Quercus lobata HOM05D000876 ORTHO05D000285 3.0e-09 66.2 176 32.4
Hund26462 Selenicereus undatus HOM05D000876 ORTHO05D002662 3.0e-09 66.2 201 31.3
FAN05G0722 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.1e-09 65.5 172 28.5
FAN17G2734 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.1e-09 65.5 176 28.4
FAN23G0201 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.1e-09 65.5 172 30.8
FAN23G2351 Fragaria x ananassa HOM05D000876 ORTHO05D000285 5.1e-09 65.5 172 30.8
Actinidia38818 Actinidia chinensis HOM05D000876 ORTHO05D000285 6.7e-09 65.1 175 27.4
FAN22G0137 Fragaria x ananassa HOM05D000876 ORTHO05D000285 6.7e-09 65.1 172 30.2
QL03p014458 Quercus lobata HOM05D000876 ORTHO05D000285 6.7e-09 65.1 181 28.7
QL06p033300 Quercus lobata HOM05D000876 ORTHO05D000285 6.7e-09 65.1 181 28.7
QL08p029247 Quercus lobata HOM05D013302 ORTHO05D015047 6.7e-09 65.1 173 32.9
Actinidia04386 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.1e-08 64.3 178 28.7
Actinidia07377 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.1e-08 64.3 178 28.7
Actinidia15148 Actinidia chinensis HOM05D000876 ORTHO05D000285 1.1e-08 64.3 178 28.7
QL01p041709 Quercus lobata HOM05D000876 ORTHO05D000285 1.1e-08 64.3 181 28.2
FAN07G1275 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.5e-08 63.9 175 29.1
arahy.Tifrunner.gnm1.ann1.D3784E Arachis hypogaea HOM05D000034 ORTHO05D000037 2.5e-08 63.2 172 27.9
QL05p031161 Quercus lobata HOM05D000034 ORTHO05D000037 2.5e-08 63.2 173 32.9
FAN05G1224 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.3e-08 62.8 175 29.1
FAN02G3048 Fragaria x ananassa HOM05D000876 ORTHO05D000285 4.3e-08 62.4 172 29.1
FvH4_2g31320 Fragaria vesca HOM05D000876 ORTHO05D022651 7.4e-08 61.6 163 30.1
Nitab4.5_0028034g0010 Nicotiana tabacum HOM05D007579 ORTHO05D000285 7.4e-08 61.6 160 29.4
Actinidia36308 Actinidia chinensis HOM05D000876 ORTHO05D000285 9.7e-08 61.2 117 31.6
FvH4_1g28413 Fragaria vesca HOM05D000876 ORTHO05D015047 9.7e-08 61.2 165 27.3
FAN14G5489 Fragaria x ananassa HOM05D000876 ORTHO05D000285 9.7e-08 61.2 160 26.9
Peaxi162Scf00174g00006 Petunia axillaris HOM05D007579 ORTHO05D000285 9.7e-08 61.2 128 32.0
Ah.03g141330 Amaranthus hybridus HOM05D000876 ORTHO05D000285 1.3e-07 60.8 180 27.2
FAN09G3353 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.3e-07 60.8 166 27.7
TAR636G1415 Trochodendron aralioides HOM05D011286 ORTHO05D000285 1.3e-07 60.8 184 25.0
Atru.chr3.1562 Acer truncatum HOM05D000876 ORTHO05D000285 1.6e-07 60.5 183 25.1
Atru.chr3.1584 Acer truncatum HOM05D000876 ORTHO05D000285 1.6e-07 60.5 183 25.1
Ah.10g031690 Amaranthus hybridus HOM05D000034 ORTHO05D000285 1.6e-07 60.5 178 27.5
FAN15G0148 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.6e-07 60.5 172 27.9
QL08p009302 Quercus lobata HOM05D000876 ORTHO05D000285 1.6e-07 60.5 181 29.3
arahy.Tifrunner.gnm1.ann1.X5RLQI Arachis hypogaea HOM05D000034 ORTHO05D000285 2.2e-07 60.1 104 30.8
Ah.01g014380 Amaranthus hybridus HOM05D000876 ORTHO05D002662 2.8e-07 59.7 178 28.1
FAN21G1280 Fragaria x ananassa HOM05D000876 ORTHO05D000285 2.8e-07 59.7 165 26.7
Hma1.2p1_1123F.1_g259380 Hydrangea macrophylla HOM05D000876 ORTHO05D000285 2.8e-07 59.7 172 28.5
Peaxi162Scf00002g02220 Petunia axillaris HOM05D000876 ORTHO05D000285 2.8e-07 59.7 149 30.9
arahy.Tifrunner.gnm1.ann1.T11VTH Arachis hypogaea HOM05D000034 ORTHO05D000037 3.7e-07 59.3 152 30.3
FAN11G2465 Fragaria x ananassa HOM05D000876 ORTHO05D000285 3.7e-07 59.3 159 29.6
Solyc10g049530.3 Solanum lycopersicum HOM05D000034 ORTHO05D000037 3.7e-07 59.3 183 29.0
TAR629G0381 Trochodendron aralioides HOM05D011286 ORTHO05D000285 4.8e-07 58.9 180 25.0
Atru.chr7.239 Acer truncatum HOM05D000034 ORTHO05D000037 6.3e-07 58.5 180 27.2
Actinidia40454 Actinidia chinensis HOM05D000876 ORTHO05D000285 6.3e-07 58.5 108 31.5
Potri.003G006700 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.3e-07 58.5 180 29.4
Potri.010G132850 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.3e-07 58.5 180 29.4
Potri.017G062600 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.3e-07 58.5 166 30.7
FAN08G0806 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.1e-06 57.8 157 32.5
TAR624G0658 Trochodendron aralioides HOM05D011286 ORTHO05D000285 1.1e-06 57.8 184 25.0
FvH4_7g00070 Fragaria vesca HOM05D000876 ORTHO05D000285 1.8e-06 57.0 162 30.2
FAN22G0382 Fragaria x ananassa HOM05D000876 ORTHO05D000285 1.8e-06 57.0 157 29.3
Glyma.02G166900 Glycine max HOM05D000876 ORTHO05D000285 1.8e-06 57.0 170 30.6
arahy.Tifrunner.gnm1.ann1.AG0B9Q Arachis hypogaea HOM05D000034 ORTHO05D000285 2.4e-06 56.6 175 24.6
arahy.Tifrunner.gnm1.ann1.PEG6DJ Arachis hypogaea HOM05D000034 ORTHO05D000037 2.4e-06 56.6 163 26.4
Glyma.18G094800 Glycine max HOM05D000876 ORTHO05D000285 2.4e-06 56.6 176 29.5
Glyma.19G101700 Glycine max HOM05D000876 ORTHO05D000285 2.4e-06 56.6 173 29.5
arahy.Tifrunner.gnm1.ann1.L4SQ9F Arachis hypogaea HOM05D000034 ORTHO05D000037 3.1e-06 56.2 100 33.0
FvH4_3g21471 Fragaria vesca HOM05D000034 ORTHO05D000285 3.1e-06 56.2 161 25.5
DCAR_026451 Daucus carota HOM05D000876 ORTHO05D000285 4.1e-06 55.8 186 26.3
SGA_v2.0_scaffold136G35048 Striga asiatica HOM05D045704 ORTHO05D000285 4.1e-06 55.8 186 26.3
arahy.Tifrunner.gnm1.ann1.GG5U8X Arachis hypogaea HOM05D000876 ORTHO05D000285 5.3e-06 55.5 163 25.8
FvH4_6g53022 Fragaria vesca HOM05D000876 ORTHO05D000285 6.9e-06 55.1 171 29.2
Potri.014G026000 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.9e-06 55.1 180 28.9
Potri.014G061450 Populus trichocarpa HOM05D000876 ORTHO05D000285 6.9e-06 55.1 182 25.3


User provided reference genes

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