Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001384 Camellia sinensis var. sinensis HOM05D002452 ORTHO05D006766 3.2e-266 921.4 530 100.0
Actinidia12591 Actinidia chinensis HOM05D002452 ORTHO05D006766 9.4e-202 707.2 538 73.0
vmacro11955 Vaccinium macrocarpon HOM05D002452 ORTHO05D006766 3.8e-195 685.3 544 71.0
Rhsim06G0210300 Rhododendron simsii HOM05D002452 ORTHO05D006766 3.6e-185 652.1 588 64.1
Dinv18382 Davidia involucrata HOM05D002452 ORTHO05D006766 3.2e-165 585.9 534 63.3
Lj8C147T4 Lonicera japonica HOM05D002452 ORTHO05D006766 2.1e-161 573.2 577 58.4
Cfa019543 Carpinus fangiana HOM05D002452 ORTHO05D006766 6.8e-160 568.2 535 61.9
Thecc.07G126400 Theobroma cacao HOM05D002452 ORTHO05D006766 1.3e-158 563.9 539 60.5
QL08p025729 Quercus lobata HOM05D002452 ORTHO05D006766 1.9e-157 560.1 543 61.1
Prupe.4G160000 Prunus persica HOM05D002452 ORTHO05D006766 6.6e-155 551.6 551 58.1
CiPaw.12G112400 Carya illinoinensis HOM05D002452 ORTHO05D006766 1.5e-154 550.4 539 60.1
TAR626G0804 Trochodendron aralioides HOM05D002452 ORTHO05D006766 5.6e-154 548.5 541 59.1
TAR627G0084 Trochodendron aralioides HOM05D002452 ORTHO05D006766 4.0e-152 542.3 538 57.6
GSVIVG01014168001 Vitis vinifera HOM05D002452 ORTHO05D006766 8.4e-150 534.6 536 59.3
Gohir.A04G043100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.1e-149 532.3 539 58.3
Atru.chr2.2062 Acer truncatum HOM05D002452 ORTHO05D006766 3.0e-147 526.2 536 59.5
COL.COLO4_17511 Corchorus olitorius HOM05D002452 ORTHO05D006766 3.0e-147 526.2 557 56.0
Gohir.D05G340400 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.5e-146 523.9 540 57.6
Gohir.D01G040900 Gossypium hirsutum HOM05D002452 ORTHO05D006766 1.2e-145 520.8 539 56.0
Ciclev10019497m.g Citrus clementina HOM05D002452 ORTHO05D006766 2.8e-145 519.6 542 58.7
Gorai.002G051000 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.7e-145 518.8 540 56.1
Gorai.009G366800 Gossypium raimondii HOM05D002452 ORTHO05D006766 4.7e-145 518.8 546 57.0
Cc05_g10930 Coffea canephora HOM05D002452 ORTHO05D006766 4.4e-143 512.3 533 57.2
Duzib213G0380 Durio zibethinus HOM05D002452 ORTHO05D006766 4.2e-141 505.8 544 54.8
MD11G1266100 Malus domestica HOM05D002452 ORTHO05D006766 7.1e-141 505.0 544 58.3
Actinidia07509 Actinidia chinensis HOM05D002452 ORTHO05D006766 1.9e-138 496.9 365 71.0
Potri.001G387300 Populus trichocarpa HOM05D002452 ORTHO05D006766 4.3e-138 495.7 534 57.5
RcHm_v2.0_Chr5g0030441 Rosa chinensis HOM05D002452 ORTHO05D006766 3.6e-137 492.7 573 54.8
Peaxi162Scf00692g00318 Petunia axillaris HOM05D002452 ORTHO05D006766 6.2e-137 491.9 532 55.6
Nn3g21096 Nelumbo nucifera HOM05D002452 ORTHO05D006766 4.0e-136 489.2 573 53.6
Nitab4.5_0000383g0070 Nicotiana tabacum HOM05D002452 ORTHO05D006766 1.2e-135 487.6 531 54.0
TWI39G0752 Tripterygium wilfordii HOM05D002452 ORTHO05D006766 2.6e-135 486.5 534 55.2
PGR083G1533 Punica granatum HOM05D002452 ORTHO05D006766 9.9e-135 484.6 536 54.7
MSTRG.14972 Avicennia marina HOM05D002452 ORTHO05D006766 2.9e-134 483.0 535 53.3
CANSAT35G1635 Cannabis sativa HOM05D002452 ORTHO05D006766 8.4e-134 481.5 577 51.0
ClCG11G017390 Citrullus lanatus HOM05D002452 ORTHO05D006766 1.9e-133 480.3 550 51.3
CsaV3_4G033030 Cucumis sativus L. HOM05D002452 ORTHO05D006766 2.4e-133 479.9 535 53.5
MELO3C025646.2 Cucumis melo HOM05D002452 ORTHO05D006766 1.2e-132 477.6 535 53.6
Eucgr.F01252 Eucalyptus grandis HOM05D002452 ORTHO05D006766 2.1e-132 476.9 536 53.7
Manes.03G099700 Manihot esculenta HOM05D002452 ORTHO05D006766 4.6e-132 475.7 477 60.0
FvH4_3g18120 Fragaria vesca HOM05D002452 ORTHO05D006766 1.8e-131 473.8 589 53.3
Sopen10g003230 Solanum pennellii HOM05D002452 ORTHO05D006766 3.3e-130 469.5 555 53.0
Atru.chr10.1169 Acer truncatum HOM05D002452 ORTHO05D006766 2.1e-129 466.8 497 58.6
DCAR_013269 Daucus carota HOM05D002452 ORTHO05D006766 2.1e-129 466.8 576 49.7
Oeu025328.2 Olea europaea HOM05D002452 ORTHO05D006766 2.1e-129 466.8 544 52.8
HanXRQChr15g0495181 Helianthus annuus HOM05D002452 ORTHO05D006766 4.8e-129 465.7 536 52.6
SalBow8G0660 Salvia bowleyana HOM05D002452 ORTHO05D006766 6.2e-129 465.3 536 51.5
Solyc10g007400.4 Solanum lycopersicum HOM05D002452 ORTHO05D006766 1.8e-128 463.8 558 51.8
SalBow1G0777 Salvia bowleyana HOM05D002452 ORTHO05D006766 2.4e-128 463.4 536 51.3
TAR636G0392 Trochodendron aralioides HOM05D001914 ORTHO05D006766 2.4e-128 463.4 552 51.4
Sed0025986 Sechium edule HOM05D002452 ORTHO05D006766 4.0e-128 462.6 534 50.6
CAN.G904.34 Capsicum annuum HOM05D002452 ORTHO05D006766 1.5e-127 460.7 543 53.0
Glyma.12G231200 Glycine max HOM05D002452 ORTHO05D006766 3.8e-126 456.1 539 52.3
Sc03g0010610 Simmondsia chinensis HOM05D002452 ORTHO05D006766 9.3e-125 451.4 551 53.0
SGA_v2.0_scaffold181G39753 Striga asiatica HOM05D002452 ORTHO05D006766 9.3e-125 451.4 534 50.7
SGA_v2.0_scaffold73G24396 Striga asiatica HOM05D002452 ORTHO05D006766 3.5e-124 449.5 534 51.5
FAN11G1668 Fragaria x ananassa HOM05D003130 ORTHO05D003547 3.3e-122 443.0 566 52.7
arahy.Tifrunner.gnm1.ann1.69X35Q Arachis hypogaea HOM05D002452 ORTHO05D006766 9.6e-122 441.4 540 51.9
AUR62019605 Chenopodium quinoa HOM05D002452 ORTHO05D006766 1.3e-121 441.0 547 50.1
Lsat_1_v5_gn_7_102200 Lactuca sativa HOM05D002452 ORTHO05D006766 2.8e-121 439.9 530 55.3
Haze_09304 Corylus avellana HOM05D002452 ORTHO05D006766 3.7e-121 439.5 453 58.9
Gohir.A01G051100 Gossypium hirsutum HOM05D002452 ORTHO05D006766 4.8e-121 439.1 439 57.6
RcHm_v2.0_Chr5g0030521 Rosa chinensis HOM05D002452 ORTHO05D006766 1.1e-120 438.0 562 51.6
Aqoxy1G01990 Aquilegia oxysepala HOM05D002452 ORTHO05D006766 2.4e-120 436.8 544 51.3
Migut.M00711 Erythranthe guttata HOM05D002452 ORTHO05D006766 3.1e-120 436.4 564 48.6
Psat0s2485g0160 Pisum sativum HOM05D002452 ORTHO05D006766 4.0e-120 436.0 541 52.5
THA.LOC104808089 Tarenaya hassleriana HOM05D002452 ORTHO05D006766 2.0e-119 433.7 538 50.9
TPR.G16056 Trifolium pratense HOM05D002452 ORTHO05D006766 2.6e-119 433.3 544 52.9
PGSC0003DMG400021257 Solanum tuberosum HOM05D002452 ORTHO05D006766 3.8e-118 429.5 636 44.5
PSO541G2585 Papaver somniferum HOM05D002452 ORTHO05D006766 3.2e-117 426.4 531 49.5
Medtr2g075820 Medicago truncatula HOM05D002452 ORTHO05D006766 4.2e-117 426.0 539 50.3
arahy.Tifrunner.gnm1.ann1.T9SFGX Arachis hypogaea HOM05D002452 ORTHO05D006766 2.7e-116 423.3 545 49.9
PSO675G8136 Papaver somniferum HOM05D002452 ORTHO05D006766 5.1e-115 419.1 531 49.0
EL10Ac4g08382 Beta vulgaris HOM05D002452 ORTHO05D006766 1.1e-114 417.9 551 49.7
Lalb_Chr20g0109181 Lupinus albus HOM05D002452 ORTHO05D006766 1.3e-113 414.5 537 49.5
Ca_03951_v3 Cicer arietinum L. HOM05D002452 ORTHO05D006766 3.7e-113 412.9 541 53.0
ECA236G2857 Erigeron canadensis HOM05D002452 ORTHO05D006766 3.7e-113 412.9 530 48.1
Lj3g0025969 Lotus japonicus HOM05D002452 ORTHO05D006766 4.1e-112 409.5 541 48.4
Phvul.005G080800 Phaseolus vulgaris HOM05D002452 ORTHO05D006766 4.5e-111 406.0 540 48.7
AUR62037577 Chenopodium quinoa HOM05D002452 ORTHO05D006766 2.2e-110 403.7 524 51.0
Thhalv10018425m.g Eutrema salsugineum HOM05D002452 ORTHO05D006766 1.1e-109 401.4 533 46.7
FAN16G1664 Fragaria x ananassa HOM05D002452 ORTHO05D006766 7.2e-109 398.7 464 53.0
VMungo1080G0044 Vigna mungo HOM05D002452 ORTHO05D006766 1.6e-108 397.5 541 49.2
Sp5g33730 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.8e-107 394.0 535 46.5
FAN25G3870 Fragaria x ananassa HOM05D003130 ORTHO05D003547 2.8e-105 386.7 537 50.3
Lalb_Chr25g0285731 Lupinus albus HOM05D002452 ORTHO05D006766 2.0e-103 380.6 540 47.0
AL2G39060 Arabidopsis lyrata HOM05D002452 ORTHO05D006766 7.7e-103 378.6 532 45.9
CARHR072180 Cardamine hirsuta HOM05D002452 ORTHO05D006766 5.5e-101 372.5 532 45.1
AT1G78650 Arabidopsis thaliana HOM05D002452 ORTHO05D006766 1.7e-97 360.9 465 48.0
Eucgr.F01259 Eucalyptus grandis HOM05D002452 ORTHO05D006766 4.8e-97 359.4 474 49.4
BcaC08g47423 Brassica carinata HOM05D002452 ORTHO05D006766 1.4e-96 357.8 530 43.6
Carub.0002s2550 Capsella rubella HOM05D002452 ORTHO05D006766 1.4e-96 357.8 533 43.3
Aa31LG4G2320 Aethionema arabicum HOM05D002452 ORTHO05D006766 2.4e-96 357.1 579 42.8
BcaC08g47422 Brassica carinata HOM05D002452 ORTHO05D006766 2.4e-96 357.1 534 44.8
BraA07t31897Z Brassica rapa HOM05D002452 ORTHO05D006766 6.9e-96 355.5 532 44.0
A07p43910 Brassica napus HOM05D002452 ORTHO05D006766 1.2e-95 354.8 532 44.0
Ah.04g164150 Amaranthus hybridus HOM05D003130 ORTHO05D003547 3.4e-95 353.2 562 44.0
Zm00001eb120810 Zea mays HOM05D002452 ORTHO05D006766 1.2e-92 344.7 522 43.1
CDE04G3284 Ceratophyllum demersum HOM05D002452 ORTHO05D006766 3.6e-92 343.2 554 41.0
Zm00001eb338160 Zea mays HOM05D002452 ORTHO05D006766 3.0e-91 340.1 533 43.3
MD03G1244600 Malus domestica HOM05D002452 ORTHO05D006766 2.2e-89 334.0 318 56.9
Cpa.g.sc77.52 Carica papaya HOM05D002452 ORTHO05D006766 9.1e-88 328.6 377 54.4
Os01g0204000 Oryza sativa ssp. japonica HOM05D002452 ORTHO05D006766 3.8e-86 323.2 538 42.6
Eucgr.F01317 Eucalyptus grandis HOM05D002452 ORTHO05D006766 5.0e-86 322.8 297 57.6
HPP92_024061 Vanilla planifolia HOM05D002452 ORTHO05D006766 2.5e-85 320.5 545 42.0
ATR0012G041 Amborella trichopoda HOM05D002452 ORTHO05D006766 1.7e-81 307.8 535 41.7
C06p52530 Brassica napus HOM05D002452 ORTHO05D006585 1.1e-80 305.1 490 41.6
BolC6t40272H Brassica oleracea HOM05D002452 ORTHO05D006585 1.1e-80 305.1 490 41.6
Glyma.13G268300 Glycine max HOM05D002452 ORTHO05D006766 1.8e-75 287.7 268 56.3
RcHm_v2.0_Chr5g0030351 Rosa chinensis HOM05D002452 ORTHO05D006766 2.4e-72 277.3 447 48.3
PSO541G6050 Papaver somniferum HOM05D002452 ORTHO05D006766 3.1e-72 276.9 324 50.0
RcHm_v2.0_Chr5g0030181 Rosa chinensis HOM05D002452 ORTHO05D006766 2.0e-71 274.2 448 48.4
SEGI_19501 Sequoiadendron giganteum HOM05D002452 ORTHO05D006766 1.1e-69 268.5 568 37.0
Hund10543 Selenicereus undatus HOM05D002452 ORTHO05D006766 9.2e-64 248.8 404 44.3
Pp3c27_7450 Physcomitrium patens HOM05D002452 ORTHO05D006766 5.2e-59 233.0 469 40.3
Eucgr.F01264 Eucalyptus grandis HOM05D002452 ORTHO05D006766 7.0e-48 196.1 435 37.9
Zm00001eb317290 Zea mays HOM05D002452 ORTHO05D006766 3.4e-42 177.2 265 40.0
Mapoly0011s0137 Marchantia polymorpha HOM05D002452 ORTHO05D006766 7.5e-42 176.0 565 30.8
AagrBONN_evm.TU.Sc2ySwM_368.2647 Anthoceros agrestis HOM05D002452 ORTHO05D006766 9.9e-42 175.6 569 30.8
SMO172G0197 Selaginella moellendorffii HOM05D000586 ORTHO05D003356 3.9e-38 163.7 523 31.4
SpUn0074_0010 Schrenkiella parvula HOM05D002452 ORTHO05D006766 1.2e-31 142.1 256 41.8
CBR_g36415 Chara braunii HOM05D002452 ORTHO05D006766 1.7e-30 138.3 225 35.1
Zm00001eb370750 Zea mays HOM05D002452 ORTHO05D006766 1.8e-27 128.3 256 35.5
MD03G1244500 Malus domestica HOM05D002452 ORTHO05D006766 1.2e-23 115.5 177 51.4
Zm00001eb137460 Zea mays HOM05D002452 ORTHO05D006766 6.0e-23 113.2 213 38.5
Zm00001eb002150 Zea mays HOM05D002452 ORTHO05D006766 5.6e-21 106.7 205 39.5
Zm00001eb409150 Zea mays HOM05D002452 ORTHO05D006766 8.1e-20 102.8 198 37.4
RcHm_v2.0_Chr5g0030251 Rosa chinensis HOM05D002452 ORTHO05D006766 1.5e-18 98.6 131 57.3
Zm00001eb309500 Zea mays HOM05D002452 ORTHO05D006766 1.5e-18 98.6 69 65.2
Cre03.g202250 Chlamydomonas reinhardtii HOM05D002452 ORTHO05D006766 3.5e-15 87.4 125 33.6
Zm00001eb024250 Zea mays HOM05D002452 ORTHO05D006766 1.8e-14 85.1 138 39.9
Zm00001eb017750 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 125 43.2
Zm00001eb038850 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 125 43.2
Zm00001eb100520 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 125 43.2
Zm00001eb188790 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 125 43.2
Zm00001eb319080 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 125 43.2
Zm00001eb343810 Zea mays HOM05D002452 ORTHO05D006766 6.7e-14 83.2 125 43.2
unitig_746.g26692 Utricularia gibba HOM05D002418 ORTHO05D002572 1.9e-13 81.6 255 31.0
Gohir.A01G051000 Gossypium hirsutum HOM05D002452 ORTHO05D006766 3.3e-13 80.9 100 48.0
Zm00001eb309510 Zea mays HOM05D002452 ORTHO05D006766 2.1e-12 78.2 120 40.8
MCO14G309 Micromonas commoda HOM05D002452 ORTHO05D006766 1.3e-09 68.9 261 26.1
Haze_09303 Corylus avellana HOM05D000808 ORTHO05D000863 4.2e-08 63.9 37 75.7


User provided reference genes

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