Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001376 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 7.9e-126 453.8 223 100.0
CSS0011354 Camellia sinensis var. sinensis HOM05D001733 ORTHO05D001882 5.3e-122 441.0 218 99.5
Dinv43956 Davidia involucrata HOM05D001733 ORTHO05D001882 5.5e-103 377.9 215 85.1
Lj7P561T30 Lonicera japonica HOM05D001733 ORTHO05D001882 1.4e-98 363.2 224 80.4
Nitab4.5_0000792g0200 Nicotiana tabacum HOM05D001733 ORTHO05D001882 1.9e-95 352.8 204 84.3
Nitab4.5_0007787g0030 Nicotiana tabacum HOM05D001733 ORTHO05D001882 6.1e-94 347.8 204 82.8
PGSC0003DMG401031123 Solanum tuberosum HOM05D001733 ORTHO05D001882 6.7e-93 344.4 204 82.8
Cc02_g26570 Coffea canephora HOM05D001733 ORTHO05D001882 3.3e-92 342.0 203 81.8
Sopen01g033080 Solanum pennellii HOM05D001733 ORTHO05D001882 1.3e-91 340.1 204 82.4
Solyc01g081520.3 Solanum lycopersicum HOM05D001733 ORTHO05D001882 2.2e-91 339.3 204 82.4
vmacro15942 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 6.3e-91 337.8 212 77.4
Rhsim07G0048200 Rhododendron simsii HOM05D001733 ORTHO05D001882 3.8e-88 328.6 197 81.2
Lsat_1_v5_gn_7_34060 Lactuca sativa HOM05D001733 ORTHO05D001882 1.5e-87 326.6 209 76.1
MSTRG.20625 Avicennia marina HOM05D001733 ORTHO05D001882 2.3e-85 319.3 199 76.9
Oeu060721.2 Olea europaea HOM05D001733 ORTHO05D001882 2.3e-85 319.3 201 78.6
Eucgr.D01117 Eucalyptus grandis HOM05D001733 ORTHO05D001882 4.0e-85 318.5 204 75.5
DCAR_029572 Daucus carota HOM05D001733 ORTHO05D001882 5.2e-85 318.2 196 79.6
Manes.08G156000 Manihot esculenta HOM05D001733 ORTHO05D001882 6.8e-85 317.8 215 74.0
PGR044G0034 Punica granatum HOM05D001733 ORTHO05D001882 8.8e-85 317.4 203 75.4
Actinidia26430 Actinidia chinensis HOM05D001733 ORTHO05D001882 4.4e-84 315.1 167 91.0
Potri.013G070001 Populus trichocarpa HOM05D001733 ORTHO05D001882 4.4e-84 315.1 213 71.4
TAR362G0336 Trochodendron aralioides HOM05D001733 ORTHO05D001882 5.7e-84 314.7 194 77.8
Ciclev10023278m.g Citrus clementina HOM05D001733 ORTHO05D001882 9.8e-84 313.9 211 73.5
Sabra13G0060700 Salix brachista HOM05D001733 ORTHO05D001882 9.8e-84 313.9 213 70.9
ClCG08G014080 Citrullus lanatus HOM05D001733 ORTHO05D001882 1.3e-83 313.5 217 69.6
Haze_15782 Corylus avellana HOM05D001733 ORTHO05D001882 4.8e-83 311.6 219 72.6
Migut.B01416 Erythranthe guttata HOM05D001733 ORTHO05D001882 4.8e-83 311.6 195 74.9
Cpa.g.sc73.32 Carica papaya HOM05D001733 ORTHO05D001882 1.1e-82 310.5 213 71.4
Cfa003706 Carpinus fangiana HOM05D001733 ORTHO05D001882 1.4e-82 310.1 219 72.1
CiPaw.02G047900 Carya illinoinensis HOM05D001733 ORTHO05D001882 1.8e-82 309.7 218 73.4
CsaV3_2G024360 Cucumis sativus L. HOM05D001733 ORTHO05D001882 1.8e-82 309.7 211 69.7
MD02G1230600 Malus domestica HOM05D001733 ORTHO05D001882 2.0e-81 306.2 221 68.8
HanXRQChr04g0117601 Helianthus annuus HOM05D001733 ORTHO05D001882 7.7e-81 304.3 202 73.8
Sed0021856 Sechium edule HOM05D001733 ORTHO05D001882 1.7e-80 303.1 211 68.2
SGA_v2.0_scaffold98G29368 Striga asiatica HOM05D001733 ORTHO05D001882 1.7e-80 303.1 198 71.2
Prupe.2G107500 Prunus persica HOM05D001733 ORTHO05D001882 2.2e-80 302.8 204 72.5
MELO3C011346.2 Cucumis melo HOM05D001733 ORTHO05D001882 2.9e-80 302.4 211 67.3
Hund19368 Selenicereus undatus HOM05D001733 ORTHO05D001882 1.1e-79 300.4 213 70.4
TWI39G0742 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.5e-79 300.1 200 72.5
TWI73G0070 Tripterygium wilfordii HOM05D001733 ORTHO05D001882 1.9e-79 299.7 200 73.0
RcHm_v2.0_Chr1g0341081 Rosa chinensis HOM05D001733 ORTHO05D001882 4.2e-79 298.5 213 68.1
unitig_0.g1363 Utricularia gibba HOM05D001733 ORTHO05D001882 1.2e-78 297.0 195 71.3
QL08p048200 Quercus lobata HOM05D001733 ORTHO05D001882 2.1e-78 296.2 201 75.1
Atru.chr9.238 Acer truncatum HOM05D001733 ORTHO05D001882 4.7e-78 295.0 199 70.9
Lalb_Chr23g0264941 Lupinus albus HOM05D001733 ORTHO05D001882 3.0e-77 292.4 212 67.5
Phvul.009G117800 Phaseolus vulgaris HOM05D001733 ORTHO05D001882 2.0e-76 289.7 213 69.5
VMungo1309G3105 Vigna mungo HOM05D001733 ORTHO05D001882 2.0e-76 289.7 213 70.0
Glyma.06G001900 Glycine max HOM05D001733 ORTHO05D001882 7.5e-76 287.7 203 71.4
Psat5g001280 Pisum sativum HOM05D001733 ORTHO05D001882 9.8e-76 287.3 219 67.1
SalBow5G0061 Salvia bowleyana HOM05D001733 ORTHO05D001882 2.2e-75 286.2 202 67.3
CANSAT78G1742 Cannabis sativa HOM05D001733 ORTHO05D001882 2.8e-75 285.8 194 70.6
ECA236G4258 Erigeron canadensis HOM05D000200 ORTHO05D000262 6.3e-75 284.6 192 71.9
AUR62020701 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.4e-74 283.5 200 72.0
Ca_15286_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.8e-74 283.1 219 65.8
Ca_15422_v3 Cicer arietinum L. HOM05D001733 ORTHO05D001882 1.8e-74 283.1 219 65.8
Lj1g0025923 Lotus japonicus HOM05D001733 ORTHO05D001882 3.1e-74 282.3 199 68.8
FAN01G0027 Fragaria x ananassa HOM05D001733 ORTHO05D001882 4.1e-74 282.0 200 69.5
Medtr3g118200 Medicago truncatula HOM05D001733 ORTHO05D001882 4.1e-74 282.0 196 71.4
FvH4_7g08140 Fragaria vesca HOM05D001733 ORTHO05D001882 5.4e-74 281.6 200 69.5
FAN03G0842 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.4e-74 281.6 200 69.0
FAN06G0601 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.4e-74 281.6 200 69.5
FAN10G0402 Fragaria x ananassa HOM05D001733 ORTHO05D001882 5.4e-74 281.6 200 69.0
AUR62028023 Chenopodium quinoa HOM05D001733 ORTHO05D001882 1.6e-73 280.0 200 71.0
EL10Ac2g03646 Beta vulgaris HOM05D001733 ORTHO05D001882 5.9e-73 278.1 203 68.5
THA.LOC104820811 Tarenaya hassleriana HOM05D001733 ORTHO05D001882 2.9e-72 275.8 208 66.3
Aqoxy7G03741 Aquilegia oxysepala HOM05D001733 ORTHO05D001882 3.8e-72 275.4 197 70.6
Sc06g0001410 Simmondsia chinensis HOM05D001733 ORTHO05D001882 6.6e-72 274.6 210 67.6
arahy.Tifrunner.gnm1.ann1.A8CT9J Arachis hypogaea HOM05D001733 ORTHO05D001882 4.7e-70 268.5 199 65.3
Aa31LG5G14110 Aethionema arabicum HOM05D001733 ORTHO05D001882 1.2e-68 263.8 202 63.9
Nn044s41810 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.8e-68 260.8 199 64.8
Nn1g10086 Nelumbo nucifera HOM05D001733 ORTHO05D001882 9.8e-68 260.8 199 64.8
Duzib106G0611 Durio zibethinus HOM05D001733 ORTHO05D001882 3.7e-67 258.8 218 61.5
Gohir.A11G224218 Gossypium hirsutum HOM05D001733 ORTHO05D001882 4.9e-67 258.5 204 62.7
A03p33340 Brassica napus HOM05D001733 ORTHO05D001882 8.3e-67 257.7 213 60.6
Sp3g02590 Schrenkiella parvula HOM05D001733 ORTHO05D001882 8.3e-67 257.7 202 62.9
AL3G13370 Arabidopsis lyrata HOM05D001733 ORTHO05D001882 1.1e-66 257.3 209 60.8
Thhalv10021487m.g Eutrema salsugineum HOM05D001733 ORTHO05D001882 1.1e-66 257.3 202 62.9
Gorai.007G250600 Gossypium raimondii HOM05D001733 ORTHO05D001882 1.4e-66 256.9 204 62.3
AT3G03600 Arabidopsis thaliana HOM05D001733 ORTHO05D001882 1.8e-66 256.5 211 59.7
A05p43710 Brassica napus HOM05D001733 ORTHO05D001882 1.8e-66 256.5 202 62.9
BraA05t23110Z Brassica rapa HOM05D001733 ORTHO05D001882 1.8e-66 256.5 202 62.9
CARHR077640 Cardamine hirsuta HOM05D001733 ORTHO05D001882 1.8e-66 256.5 211 60.2
Cc08_g05780 Coffea canephora HOM05D001733 ORTHO05D001882 1.8e-66 256.5 166 75.3
Carub.0003s0276 Capsella rubella HOM05D001733 ORTHO05D001882 2.4e-66 256.1 209 60.3
Cc05_g05120 Coffea canephora HOM05D001733 ORTHO05D001882 2.4e-66 256.1 166 75.3
vmacro13603 Vaccinium macrocarpon HOM05D001733 ORTHO05D001882 4.1e-66 255.4 196 64.3
BcaC01g04396 Brassica carinata HOM05D001733 ORTHO05D001882 5.4e-66 255.0 202 62.9
BolC3t16323H Brassica oleracea HOM05D001733 ORTHO05D001882 5.4e-66 255.0 202 62.9
Gohir.D11G237300 Gossypium hirsutum HOM05D001733 ORTHO05D001882 5.4e-66 255.0 204 61.8
C03p40580 Brassica napus HOM05D001733 ORTHO05D001882 9.2e-66 254.2 202 62.9
BraA03t12505Z Brassica rapa HOM05D001733 ORTHO05D001882 1.2e-65 253.8 208 61.1
BcaC05g30264 Brassica carinata HOM05D001733 ORTHO05D001882 1.6e-65 253.4 202 61.4
C05p63290 Brassica napus HOM05D001733 ORTHO05D001882 2.0e-65 253.1 202 61.9
BolC5t34992H Brassica oleracea HOM05D001733 ORTHO05D001882 2.7e-65 252.7 202 61.9
BcaC05g29865 Brassica carinata HOM05D001733 ORTHO05D001882 3.5e-65 252.3 202 61.4
Thecc.05G236000 Theobroma cacao HOM05D001733 ORTHO05D001882 1.9e-63 246.5 201 61.2
COL.COLO4_21825 Corchorus olitorius HOM05D001733 ORTHO05D001882 3.3e-63 245.7 223 55.2
Ah.13g073670 Amaranthus hybridus HOM05D001733 ORTHO05D001882 4.7e-54 215.3 163 66.9
BcaB04g19363 Brassica carinata HOM05D001733 ORTHO05D001882 1.3e-51 207.2 170 61.8
CAN.G1249.13 Capsicum annuum HOM05D001733 ORTHO05D001882 1.7e-51 206.8 125 79.2
RcHm_v2.0_Chr1g0383121 Rosa chinensis HOM05D001733 ORTHO05D001882 1.6e-49 200.3 175 57.7
SEGI_38852 Sequoiadendron giganteum HOM05D001733 ORTHO05D001882 6.0e-49 198.4 199 52.3
RcHm_v2.0_Chr2g0085551 Rosa chinensis HOM05D001733 ORTHO05D001882 3.3e-47 192.6 135 68.9
TPR.G38482 Trifolium pratense HOM05D001733 ORTHO05D001882 2.8e-46 189.5 219 51.6
RcHm_v2.0_Chr1g0363821 Rosa chinensis HOM05D001733 ORTHO05D001882 3.6e-46 189.1 139 66.9
RcHm_v2.0_Chr3g0481141 Rosa chinensis HOM05D001733 ORTHO05D001882 8.9e-45 184.5 137 64.2
Peaxi162Scf01260g00014 Petunia axillaris HOM05D001733 ORTHO05D001882 1.5e-39 167.2 95 81.1
RcHm_v2.0_Chr5g0027611 Rosa chinensis HOM05D001733 ORTHO05D001882 1.1e-37 161.0 108 68.5
RcHm_v2.0_Chr6g0246101 Rosa chinensis HOM05D001733 ORTHO05D001882 3.2e-34 149.4 108 64.8
AagrBONN_evm.TU.Sc2ySwM_228.194 Anthoceros agrestis HOM05D001733 ORTHO05D001882 4.6e-33 145.6 223 39.0
arahy.Tifrunner.gnm1.ann1.VEWU5V Arachis hypogaea HOM05D001733 ORTHO05D001882 6.6e-32 141.7 98 69.4
HanXRQChr16g0501591 Helianthus annuus HOM05D001733 ORTHO05D001882 2.1e-30 136.7 94 71.3
RcHm_v2.0_Chr5g0054321 Rosa chinensis HOM05D001733 ORTHO05D001882 9.3e-26 121.3 105 57.1
Zm00001eb385930 Zea mays HOM05D022646 ORTHO05D001882 3.9e-24 115.9 118 53.4
Zm00001eb436200 Zea mays HOM05D022646 ORTHO05D001882 3.9e-24 115.9 118 53.4
Zm00001eb436250 Zea mays HOM05D022646 ORTHO05D001882 3.9e-24 115.9 118 53.4
Zm00001eb436290 Zea mays HOM05D022646 ORTHO05D001882 3.9e-24 115.9 118 53.4
Zm00001eb436330 Zea mays HOM05D022646 ORTHO05D001882 3.9e-24 115.9 118 53.4
RcHm_v2.0_Chr5g0036111 Rosa chinensis HOM05D001733 ORTHO05D001882 3.8e-19 99.4 136 42.6
arahy.Tifrunner.gnm1.ann1.3YR680 Arachis hypogaea HOM05D001733 ORTHO05D001882 4.9e-19 99.0 74 60.8
C04p32130 Brassica napus HOM05D001733 ORTHO05D001882 7.6e-12 75.1 51 62.7
BcaC02g09516 Brassica carinata HOM05D001733 ORTHO05D001882 1.0e-11 74.7 51 62.7
A01p19710 Brassica napus HOM05D001733 ORTHO05D001882 1.0e-11 74.7 55 60.0
BolC4t25944H Brassica oleracea HOM05D001733 ORTHO05D001882 1.0e-11 74.7 51 62.7
C04p54460 Brassica napus HOM05D001733 ORTHO05D001882 1.3e-11 74.3 52 61.5
C03p74560 Brassica napus HOM05D001733 ORTHO05D001882 1.7e-11 73.9 51 62.7
arahy.Tifrunner.gnm1.ann1.BIR89S Arachis hypogaea HOM05D001903 ORTHO05D001847 2.7e-09 66.6 78 51.3
ATR0660G006 Amborella trichopoda HOM05D001733 ORTHO05D001882 7.9e-09 65.1 48 60.4
HanXRQChr05g0139891 Helianthus annuus HOM05D001733 ORTHO05D001882 1.1e-07 61.2 54 55.6
Gorai.008G076300 Gossypium raimondii HOM05D001733 ORTHO05D047820 1.5e-07 60.8 37 67.6
arahy.Tifrunner.gnm1.ann1.897E8M Arachis hypogaea HOM05D001733 ORTHO05D001882 1.9e-07 60.5 39 66.7
Gohir.D12G069601 Gossypium hirsutum HOM05D001733 ORTHO05D047820 4.3e-07 59.3 37 64.9
Mapoly0051s0114 Marchantia polymorpha HOM05D052641 ORTHO05D001882 7.4e-07 58.5 50 54.0


User provided reference genes

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