Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 7.3e-46 186.8 91 100.0
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 8.1e-45 183.3 91 97.8
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 2.6e-27 125.2 89 74.2
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 2.2e-26 122.1 89 73.0
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 6.0e-24 114.0 67 85.1
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 7.9e-24 113.6 65 86.2
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.3e-23 112.1 67 82.1
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 3.3e-22 108.2 64 82.8
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.2e-21 103.6 67 80.6
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.2e-21 103.6 67 80.6
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 8.2e-21 103.6 67 74.6
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 3.1e-20 101.7 67 71.6
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 5.9e-19 97.4 67 73.1
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 1.4e-17 92.8 67 71.6
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.4e-17 92.8 65 69.2
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 1.9e-17 92.4 67 65.7
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 3.2e-17 91.7 59 74.6
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 5.5e-17 90.9 62 71.0
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 7.2e-17 90.5 67 67.2
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 7.2e-17 90.5 68 70.6
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 1.6e-16 89.4 65 67.7
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 1.6e-16 89.4 64 65.6
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 2.1e-16 89.0 58 74.1
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 2.1e-16 89.0 67 64.2
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 2.1e-16 89.0 60 70.0
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 3.6e-16 88.2 59 71.2
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 3.6e-16 88.2 59 71.2
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 3.6e-16 88.2 65 67.7
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 6.1e-16 87.4 58 72.4
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 6.1e-16 87.4 58 72.4
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 7.9e-16 87.0 59 71.2
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 7.9e-16 87.0 59 71.2
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 2.3e-15 85.5 67 67.2
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 2.3e-15 85.5 67 67.2
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 3.9e-15 84.7 65 60.0
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 5.1e-15 84.3 58 69.0
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 8.8e-15 83.6 55 69.1
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 8.8e-15 83.6 58 65.5
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 8.8e-15 83.6 67 61.2
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 1.1e-14 83.2 58 69.0
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 1.1e-14 83.2 63 61.9
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 1.1e-14 83.2 58 67.2
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 1.1e-14 83.2 61 67.2
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 1.5e-14 82.8 58 70.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 1.5e-14 82.8 58 65.5
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 1.5e-14 82.8 65 60.0
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 1.9e-14 82.4 58 65.5
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 1.9e-14 82.4 67 61.2
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 2.5e-14 82.0 68 63.2
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 4.3e-14 81.3 58 63.8
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 5.7e-14 80.9 58 62.1
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 5.7e-14 80.9 55 69.1
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 7.4e-14 80.5 65 53.8
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 9.7e-14 80.1 61 62.3
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.3e-13 79.7 56 64.3
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 2.8e-13 78.6 51 70.6
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 4.8e-13 77.8 64 54.7
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 6.3e-13 77.4 56 64.3
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 8.2e-13 77.0 48 72.9
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.2e-13 77.0 58 63.8
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 1.1e-12 76.6 59 62.7
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.4e-12 76.3 58 63.8
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 1.4e-12 76.3 58 63.8
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.8e-12 75.9 56 60.7
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.8e-12 75.9 53 66.0
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.8e-12 75.9 59 62.7
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 2.4e-12 75.5 67 56.7
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 4.1e-12 74.7 53 64.2
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 5.3e-12 74.3 63 54.0
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 5.3e-12 74.3 60 58.3
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 1.5e-11 72.8 58 55.2
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 1.5e-11 72.8 58 62.1
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 2.6e-11 72.0 60 60.0
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 3.4e-11 71.6 63 52.4
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 3.4e-11 71.6 63 52.4
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 3.4e-11 71.6 63 52.4
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 4.5e-11 71.2 55 58.2
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 6.5e-10 67.4 56 53.6
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 1.4e-09 66.2 56 51.8
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 1.4e-09 66.2 55 54.5
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 2.5e-09 65.5 55 52.7
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 4.2e-09 64.7 47 63.8
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 5.5e-09 64.3 55 54.5
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 5.5e-09 64.3 55 54.5
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 5.5e-09 64.3 55 54.5
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 5.5e-09 64.3 55 54.5
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 5.5e-09 64.3 55 54.5
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 5.5e-09 64.3 55 52.7
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 7.2e-09 63.9 35 82.9
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 7.2e-09 63.9 55 52.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 7.2e-09 63.9 55 52.7
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 7.2e-09 63.9 55 52.7
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 7.2e-09 63.9 55 52.7
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 7.2e-09 63.9 55 52.7
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 9.4e-09 63.5 55 52.7
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 1.2e-08 63.2 55 52.7
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.2e-08 63.2 45 68.9
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 1.6e-08 62.8 55 50.9
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.0e-07 60.1 59 45.8
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 1.0e-07 60.1 58 50.0
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 6.7e-07 57.4 55 47.3
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-06 55.8 59 45.8
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.0e-06 55.8 59 45.8
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 2.6e-06 55.5 66 47.0
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.6e-06 55.5 50 56.0


User provided reference genes

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