Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.2e-148 529.3 331 100.0
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 4.1e-147 525.0 331 99.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.3e-108 397.1 329 70.2
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 9.3e-107 391.0 331 66.5
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.1e-102 377.5 334 63.2
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 2.0e-101 373.2 332 73.2
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 2.6e-101 372.9 383 57.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 4.2e-99 365.5 331 64.0
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 8.7e-97 357.8 332 60.5
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 1.6e-95 353.6 326 62.3
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 4.1e-94 349.0 339 69.6
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 1.6e-90 337.0 332 61.1
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 5.7e-88 328.6 330 60.6
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 1.7e-87 327.0 332 59.0
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 1.7e-84 317.0 330 53.9
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.0e-84 315.5 330 60.0
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.5e-84 314.7 328 53.4
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 2.5e-83 313.2 326 54.9
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 4.2e-83 312.4 332 53.0
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 9.4e-83 311.2 331 53.8
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.1e-82 310.1 330 56.4
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 2.1e-82 310.1 331 55.3
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 2.7e-82 309.7 330 53.3
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 2.7e-82 309.7 332 57.5
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 3.6e-82 309.3 332 57.5
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 1.0e-81 307.8 333 60.4
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 1.4e-81 307.4 330 55.8
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.0e-81 306.2 332 57.8
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 3.0e-81 306.2 332 52.7
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.3e-80 302.8 332 59.6
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 5.7e-80 302.0 331 51.4
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 5.7e-80 302.0 332 56.9
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 5.7e-80 302.0 331 53.5
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 7.4e-80 301.6 324 52.5
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 3.7e-79 299.3 332 59.9
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 8.2e-79 298.1 324 51.9
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 8.2e-79 298.1 324 51.9
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 1.1e-78 297.7 332 54.5
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 2.4e-78 296.6 332 54.2
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.3e-76 290.8 333 52.9
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 2.2e-76 290.0 338 50.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.2e-76 290.0 339 56.0
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 3.8e-76 289.3 326 53.1
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 4.2e-75 285.8 333 55.6
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 5.5e-75 285.4 329 51.4
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 5.5e-75 285.4 332 49.7
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 7.2e-75 285.0 332 52.7
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 2.7e-74 283.1 332 54.8
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.7e-74 283.1 332 49.4
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 4.7e-74 282.3 331 55.9
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 8.0e-74 281.6 333 55.0
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.0e-73 281.2 331 51.4
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 1.4e-73 280.8 331 51.4
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 5.2e-73 278.9 392 43.9
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 2.6e-72 276.6 332 55.4
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 4.4e-72 275.8 392 45.9
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-71 273.9 338 54.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 3.7e-71 272.7 329 51.7
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 1.1e-70 271.2 389 53.7
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.1e-70 271.2 332 56.3
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 3.1e-70 269.6 337 53.4
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 5.3e-70 268.9 320 54.1
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 1.2e-69 267.7 327 54.4
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 2.0e-69 266.9 331 46.8
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 1.0e-68 264.6 403 46.7
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 1.0e-68 264.6 334 51.5
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 6.5e-68 261.9 318 48.4
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 1.1e-67 261.2 331 50.5
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 4.2e-67 259.2 332 51.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 5.5e-67 258.8 331 45.0
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.2e-66 257.7 332 52.7
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 1.2e-66 257.7 332 52.7
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 4.7e-66 255.8 331 46.2
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.4e-65 254.2 332 52.1
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 4.0e-65 252.7 340 50.9
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 6.8e-65 251.9 325 58.2
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 8.3e-63 245.0 332 50.3
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.1e-62 244.6 305 53.1
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 1.8e-62 243.8 286 55.6
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 1.2e-61 241.1 332 54.2
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.6e-61 240.7 331 45.9
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 2.7e-61 240.0 325 46.8
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 3.5e-61 239.6 331 52.6
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 1.0e-60 238.0 330 46.4
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 3.2e-59 233.0 351 45.9
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 4.2e-59 232.6 268 51.5
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.2e-59 232.6 323 49.8
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.2e-58 231.1 263 62.4
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 2.7e-58 229.9 329 48.6
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.7e-58 229.2 389 48.6
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 8.8e-57 224.9 335 43.3
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 5.7e-56 222.2 307 45.9
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 9.8e-56 221.5 332 46.4
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 4.9e-55 219.2 262 60.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 6.3e-55 218.8 321 43.3
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 3.5e-53 213.0 369 39.8
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 1.0e-52 211.5 250 50.8
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 2.3e-52 210.3 326 42.6
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.5e-51 207.6 328 45.7
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.5e-51 207.6 317 46.7
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 7.3e-51 205.3 334 44.9
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.2e-50 204.5 188 69.1
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 2.1e-50 203.8 317 40.7
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.8e-50 203.4 317 43.2
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 4.7e-50 202.6 328 46.3
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 6.1e-50 202.2 329 47.1
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 6.1e-50 202.2 336 38.1
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 8.0e-50 201.8 332 41.0
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 3.0e-49 199.9 362 37.8
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.4e-48 196.4 380 36.1
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 2.4e-46 190.3 332 46.7
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 5.4e-46 189.1 333 46.8
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 7.0e-46 188.7 275 40.4
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 3.5e-45 186.4 295 39.0
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 5.0e-44 182.6 333 45.3
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 8.6e-44 181.8 296 37.2
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.1e-43 181.4 310 42.3
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.3e-43 179.5 365 38.1
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 9.5e-43 178.3 364 43.4
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 1.6e-42 177.6 311 44.7
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 8.0e-42 175.3 184 56.0
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.4e-41 174.5 307 45.9
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 6.8e-41 172.2 306 44.8
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.2e-40 171.4 306 36.9
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.0e-40 170.6 307 42.3
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 6.4e-39 165.6 304 39.1
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 6.4e-39 165.6 250 46.0
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 2.4e-38 163.7 302 41.4
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 1.7e-36 157.5 302 40.7
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 6.6e-36 155.6 179 47.5
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 9.5e-35 151.8 331 35.3
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 9.5e-35 151.8 331 35.3
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.2e-34 151.4 322 37.6
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.8e-34 150.2 262 50.4
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.6e-34 149.8 184 52.2
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 4.0e-33 146.4 182 48.9
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 5.2e-33 146.0 210 40.0
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 2.0e-32 144.1 304 39.1
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 1.7e-31 141.0 308 38.3
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 1.7e-31 141.0 332 37.0
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 8.3e-31 138.7 156 50.0
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-30 136.7 168 52.4
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 3.2e-30 136.7 168 52.4
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 7.8e-29 132.1 146 54.1
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 5.6e-27 125.9 160 45.6
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.4e-25 121.3 233 38.6
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.3e-25 120.6 152 46.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.4e-24 116.3 328 33.2
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.8e-24 115.9 387 27.6
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.6e-24 115.5 248 37.1
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 1.2e-21 108.2 105 61.0
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 1.2e-21 108.2 135 51.9
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.7e-20 104.4 393 28.0
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 1.7e-20 104.4 136 51.5
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 2.3e-20 104.0 188 44.7
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.3e-20 104.0 156 42.9
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.6e-18 97.8 198 34.3
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 2.1e-18 97.4 122 46.7
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 1.5e-16 91.3 84 58.3
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 9.9e-16 88.6 147 40.8
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 5.4e-14 82.8 194 34.5
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 6.6e-12 75.9 99 41.4
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 1.9e-11 74.3 225 28.0
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.3e-11 73.2 140 44.3
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 5.3e-09 66.2 96 39.6
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 9.0e-09 65.5 246 26.0
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-08 64.7 95 45.3
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-08 64.7 60 53.3
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 1.3e-07 61.6 198 27.3
Lsat_1_v5_gn_1_3000 Lactuca sativa HOM05D003707 ORTHO05D004309 1.7e-07 61.2 103 47.6
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 2.9e-07 60.5 84 40.5
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 8.4e-07 58.9 122 32.8
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 8.4e-07 58.9 122 32.8
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 9.3e-06 55.5 218 26.1
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 9.3e-06 55.5 218 26.1


User provided reference genes

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