Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001357 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 3.9e-95 351.7 207 100.0
CSS0043791 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 8.8e-79 297.4 203 88.2
CSS0026322 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 1.5e-75 286.6 203 82.3
CSS0016947 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 2.2e-74 282.7 203 84.2
SalBow4G2398 Salvia bowleyana HOM05D003288 ORTHO05D003734 4.0e-55 218.8 203 59.1
Haze_14295 Corylus avellana HOM05D003288 ORTHO05D003734 1.3e-53 213.8 203 56.7
Nn5g28678 Nelumbo nucifera HOM05D003288 ORTHO05D003734 1.7e-53 213.4 203 55.7
GSVIVG01030016001 Vitis vinifera HOM05D003288 ORTHO05D003734 2.8e-53 212.6 201 57.2
MD09G1266100 Malus domestica HOM05D003288 ORTHO05D003734 6.3e-53 211.5 203 57.1
Oeu009426.1 Olea europaea HOM05D003288 ORTHO05D003734 4.1e-52 208.8 203 54.7
CDE06G2565 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 2.9e-50 202.6 203 53.7
ECA238G4239 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.9e-49 199.9 203 53.2
Actinidia17186 Actinidia chinensis HOM05D003288 ORTHO05D003734 9.5e-49 197.6 203 60.1
COL.COLO4_06958 Corchorus olitorius HOM05D003288 ORTHO05D003734 3.6e-48 195.7 203 51.2
Rhsim10G0182400 Rhododendron simsii HOM05D003288 ORTHO05D003734 8.9e-47 191.0 203 62.1
TAR623G0700 Trochodendron aralioides HOM05D003288 ORTHO05D003734 1.5e-46 190.3 203 50.7
Duzib268G1591 Durio zibethinus HOM05D003288 ORTHO05D003734 2.6e-46 189.5 203 50.7
SGA_v2.0_scaffold96G29122 Striga asiatica HOM05D003288 ORTHO05D003734 2.6e-46 189.5 204 53.4
Ciclev10011340m.g Citrus clementina HOM05D003288 ORTHO05D003734 9.8e-46 187.6 202 50.5
vmacro23304 Vaccinium macrocarpon HOM05D003288 ORTHO05D003734 2.8e-45 186.0 203 56.7
DCAR_030537 Daucus carota HOM05D003288 ORTHO05D003734 3.7e-45 185.7 202 49.0
Sed0014607 Sechium edule HOM05D003288 ORTHO05D003734 3.7e-45 185.7 203 50.7
Lj2g0015416 Lotus japonicus HOM05D003288 ORTHO05D003734 1.4e-44 183.7 200 52.0
PGSC0003DMG400000983 Solanum tuberosum HOM05D003288 ORTHO05D003734 1.8e-44 183.3 204 51.5
TWI74G0189 Tripterygium wilfordii HOM05D003288 ORTHO05D003734 1.8e-44 183.3 200 50.5
Solyc11g006310.2 Solanum lycopersicum HOM05D003288 ORTHO05D003734 4.1e-44 182.2 204 51.0
Lsat_1_v5_gn_4_26961 Lactuca sativa HOM05D003288 ORTHO05D003734 9.2e-44 181.0 203 49.8
Dinv28220 Davidia involucrata HOM05D003288 ORTHO05D003734 3.5e-43 179.1 203 50.2
Nn4g23260 Nelumbo nucifera HOM05D003288 ORTHO05D003734 5.9e-43 178.3 203 49.8
TAR629G0745 Trochodendron aralioides HOM05D003288 ORTHO05D003734 5.9e-43 178.3 203 49.8
AUR62023637 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.0e-42 177.6 203 48.8
Thecc.04G002400 Theobroma cacao HOM05D003288 ORTHO05D003734 1.0e-42 177.6 203 48.8
FvH4_6g33230 Fragaria vesca HOM05D003288 ORTHO05D003734 1.3e-42 177.2 203 51.2
Lalb_Chr05g0212271 Lupinus albus HOM05D003288 ORTHO05D003734 1.3e-42 177.2 217 47.9
Aqoxy2G03361 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 2.3e-42 176.4 203 46.8
PGR083G1244 Punica granatum HOM05D003288 ORTHO05D003734 2.3e-42 176.4 200 48.5
Cc02_g09200 Coffea canephora HOM05D003288 ORTHO05D003734 2.9e-42 176.0 201 49.3
Cpa.g.sc116.89 Carica papaya HOM05D003288 ORTHO05D003734 3.8e-42 175.6 203 45.8
AUR62035243 Chenopodium quinoa HOM05D003288 ORTHO05D003734 3.8e-42 175.6 203 48.3
Lj7A364T81 Lonicera japonica HOM05D003288 ORTHO05D003734 3.8e-42 175.6 203 50.2
ClCG10G010670 Citrullus lanatus HOM05D003288 ORTHO05D003734 8.6e-42 174.5 203 48.8
AUR62004111 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.1e-41 174.1 203 47.8
QL02p059844 Quercus lobata HOM05D003288 ORTHO05D003734 1.1e-41 174.1 202 53.0
AUR62017809 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.5e-41 173.7 202 46.5
ECA240G3548 Erigeron canadensis HOM05D003288 ORTHO05D003734 1.5e-41 173.7 203 49.3
QL01p032763 Quercus lobata HOM05D003288 ORTHO05D003734 1.5e-41 173.7 203 50.2
AUR62007625 Chenopodium quinoa HOM05D003288 ORTHO05D003734 7.3e-41 171.4 203 47.3
CsaV3_4G000640 Cucumis sativus L. HOM05D003288 ORTHO05D003734 7.3e-41 171.4 203 48.3
SGA_v2.0_scaffold79G25577 Striga asiatica HOM05D003288 ORTHO05D003734 7.3e-41 171.4 173 56.1
arahy.Tifrunner.gnm1.ann1.F6RFY9 Arachis hypogaea HOM05D003288 ORTHO05D003734 1.2e-40 170.6 203 48.3
arahy.Tifrunner.gnm1.ann1.G6QY2G Arachis hypogaea HOM05D003288 ORTHO05D003734 1.2e-40 170.6 203 48.3
TPR.G8950 Trifolium pratense HOM05D003288 ORTHO05D003734 1.2e-40 170.6 210 48.6
Rhsim12G0111000 Rhododendron simsii HOM05D003288 ORTHO05D003734 1.6e-40 170.2 203 51.2
Cfa007776 Carpinus fangiana HOM05D003288 ORTHO05D003734 2.1e-40 169.9 203 47.3
Aqoxy3G02762 Aquilegia oxysepala HOM05D003288 ORTHO05D003734 3.6e-40 169.1 203 45.8
Phvul.001G228800 Phaseolus vulgaris HOM05D003288 ORTHO05D003734 4.7e-40 168.7 200 49.5
Lsat_1_v5_gn_3_104940 Lactuca sativa HOM05D003288 ORTHO05D003734 1.0e-39 167.5 203 47.8
Ah.02g124870 Amaranthus hybridus HOM05D003288 ORTHO05D003734 1.4e-39 167.2 203 45.3
Medtr2g093230 Medicago truncatula HOM05D003288 ORTHO05D003734 1.8e-39 166.8 200 49.5
EL10As8g23882 Beta vulgaris HOM05D003288 ORTHO05D003734 4.0e-39 165.6 203 49.8
QL01p003767 Quercus lobata HOM05D003288 ORTHO05D003734 4.0e-39 165.6 203 54.7
Ca_03338_v3 Cicer arietinum L. HOM05D003288 ORTHO05D003734 5.2e-39 165.2 200 48.5
TAR629G1838 Trochodendron aralioides HOM05D003288 ORTHO05D003734 6.8e-39 164.9 203 47.3
PSO210G4855 Papaver somniferum HOM05D003288 ORTHO05D003734 1.5e-38 163.7 203 45.3
Manes.02G079400 Manihot esculenta HOM05D003288 ORTHO05D003734 2.6e-38 162.9 203 42.9
CAN.G1256.15 Capsicum annuum HOM05D003288 ORTHO05D003734 5.8e-38 161.8 203 45.3
MELO3C017972.2 Cucumis melo HOM05D003288 ORTHO05D003734 5.8e-38 161.8 203 45.8
FAN14G0969 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.3e-37 160.6 236 44.1
CDE07G0160 Ceratophyllum demersum HOM05D003288 ORTHO05D003734 2.2e-37 159.8 203 46.3
DCAR_014148 Daucus carota HOM05D003288 ORTHO05D003734 1.1e-36 157.5 203 42.9
FAN09G4788 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.4e-36 157.1 236 47.9
Lalb_Chr15g0085041 Lupinus albus HOM05D003288 ORTHO05D003734 1.4e-36 157.1 203 45.3
VMungo1383G3441 Vigna mungo HOM05D003288 ORTHO05D003734 1.9e-36 156.8 200 46.5
unitig_748.g8456 Utricularia gibba HOM05D003288 ORTHO05D003734 3.2e-36 156.0 200 45.0
AL8G31020 Arabidopsis lyrata HOM05D003288 ORTHO05D003734 2.0e-35 153.3 203 42.9
FAN05G3577 Fragaria x ananassa HOM05D003288 ORTHO05D003734 2.0e-35 153.3 236 47.0
AT5G55490 Arabidopsis thaliana HOM05D003288 ORTHO05D003734 3.5e-35 152.5 203 41.4
CANSAT64G0297 Cannabis sativa HOM05D003288 ORTHO05D003734 7.8e-35 151.4 203 43.3
Lj2C515T4 Lonicera japonica HOM05D003288 ORTHO05D003734 3.9e-34 149.1 204 47.5
arahy.Tifrunner.gnm1.ann1.NZ46DJ Arachis hypogaea HOM05D003288 ORTHO05D003734 5.0e-34 148.7 202 44.1
SHI30119 Sapria himalayana HOM05D003288 ORTHO05D003734 5.0e-34 148.7 203 43.3
Migut.A00479 Erythranthe guttata HOM05D003288 ORTHO05D003734 3.3e-33 146.0 203 43.8
Gohir.A12G143700 Gossypium hirsutum HOM05D003288 ORTHO05D003734 3.3e-33 146.0 203 42.4
arahy.Tifrunner.gnm1.ann1.BXR7J4 Arachis hypogaea HOM05D003288 ORTHO05D003734 4.3e-33 145.6 202 43.6
Sc18g0007110 Simmondsia chinensis HOM05D003288 ORTHO05D003734 4.3e-33 145.6 202 40.1
CsaV3_3G017990 Cucumis sativus L. HOM05D003288 ORTHO05D003734 9.5e-33 144.4 165 50.3
Medtr2g063920 Medicago truncatula HOM05D003288 ORTHO05D003734 1.2e-32 144.1 200 51.0
FAN02G3499 Fragaria x ananassa HOM05D003288 ORTHO05D003734 6.2e-32 141.7 236 47.0
Nitab4.5_0002640g0060 Nicotiana tabacum HOM05D003288 ORTHO05D003734 2.3e-31 139.8 203 43.3
FvH4_6g41730 Fragaria vesca HOM05D003288 ORTHO05D003734 3.1e-31 139.4 203 45.8
Carub.0008s1584 Capsella rubella HOM05D003288 ORTHO05D003734 2.6e-30 136.3 177 42.9
MBI13_g04499_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 3.4e-30 136.0 203 42.9
MBI13_g04500_MAGBIO Magnolia biondii HOM05D003288 ORTHO05D003734 4.4e-30 135.6 203 42.4
Prupe.3G204300 Prunus persica HOM05D003288 ORTHO05D003734 9.8e-30 134.4 202 42.6
Lj5g0021383 Lotus japonicus HOM05D003288 ORTHO05D003734 1.3e-29 134.0 199 45.7
MD17G1110600 Malus domestica HOM05D003288 ORTHO05D003734 3.7e-29 132.5 202 42.6
Thhalv10015474m.g Eutrema salsugineum HOM05D003288 ORTHO05D003734 6.4e-29 131.7 203 36.5
RcHm_v2.0_Chr2g0142951 Rosa chinensis HOM05D003288 ORTHO05D003734 1.9e-28 130.2 203 49.3
QL09p034880 Quercus lobata HOM05D003288 ORTHO05D003734 7.0e-28 128.3 203 42.4
Hund06475 Selenicereus undatus HOM05D003288 ORTHO05D003734 9.2e-28 127.9 135 48.1
Haze_12714 Corylus avellana HOM05D003288 ORTHO05D003734 1.2e-27 127.5 203 40.4
Prupe.3G163900 Prunus persica HOM05D003288 ORTHO05D003734 6.0e-27 125.2 106 62.3
Sabra17G0114500 Salix brachista HOM05D003288 ORTHO05D003734 7.8e-27 124.8 203 43.8
Peaxi162Scf00039g01122 Petunia axillaris HOM05D003288 ORTHO05D003734 1.0e-26 124.4 174 43.1
Sabra17G0111500 Salix brachista HOM05D003288 ORTHO05D003734 1.3e-26 124.0 203 43.3
Sabra17G0111800 Salix brachista HOM05D003288 ORTHO05D003734 1.3e-26 124.0 203 43.3
AUR62003503 Chenopodium quinoa HOM05D003288 ORTHO05D003734 1.1e-25 120.9 169 41.4
Glyma.17G080975 Glycine max HOM05D003288 ORTHO05D003734 5.6e-25 118.6 170 42.4
Ah.03g141820 Amaranthus hybridus HOM05D003288 ORTHO05D003734 9.5e-25 117.9 203 44.8
Gohir.D12G148400 Gossypium hirsutum HOM05D003288 ORTHO05D003734 2.1e-24 116.7 203 37.9
Thecc.04G002200 Theobroma cacao HOM05D003288 ORTHO05D003734 2.1e-24 116.7 203 37.9
SEGI_20345 Sequoiadendron giganteum HOM05D003288 ORTHO05D003734 4.7e-24 115.5 202 35.6
Zm00001eb314230 Zea mays HOM05D003288 ORTHO05D003734 3.1e-23 112.8 202 35.1
BraA10t43361Z Brassica rapa HOM05D003288 ORTHO05D003734 4.0e-23 112.5 203 33.5
HanXRQChr03g0092531 Helianthus annuus HOM05D003288 ORTHO05D003734 4.0e-23 112.5 203 36.0
Glyma.11G214200 Glycine max HOM05D003288 ORTHO05D003734 6.8e-23 111.7 200 43.0
Sopen11g002220 Solanum pennellii HOM05D003288 ORTHO05D003734 8.9e-23 111.3 138 47.8
EL10Ac6g15375 Beta vulgaris HOM05D003288 ORTHO05D003734 2.0e-22 110.2 173 38.7
EL10Ac6g15379 Beta vulgaris HOM05D003288 ORTHO05D003734 2.0e-22 110.2 173 38.7
ECA240G0593 Erigeron canadensis HOM05D003288 ORTHO05D003734 2.6e-22 109.8 203 38.4
FAN14G3219 Fragaria x ananassa HOM05D003288 ORTHO05D003734 2.6e-22 109.8 275 30.2
ATR0598G225 Amborella trichopoda HOM05D003288 ORTHO05D003734 7.5e-22 108.2 173 38.7
HanXRQChr13g0424601 Helianthus annuus HOM05D003288 ORTHO05D003734 1.3e-21 107.5 206 42.7
PSO447G0361 Papaver somniferum HOM05D003288 ORTHO05D003734 1.7e-21 107.1 168 38.1
Os09g0442400 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 4.9e-21 105.5 203 31.0
PSO210G3953 Papaver somniferum HOM05D003288 ORTHO05D003734 1.1e-20 104.4 69 72.5
ECA234G0526 Erigeron canadensis HOM05D003288 ORTHO05D003734 3.2e-20 102.8 135 45.9
VMungo0331G0214 Vigna mungo HOM05D003288 ORTHO05D003734 5.4e-20 102.1 170 41.2
Atru.chr7.1988 Acer truncatum HOM05D003288 ORTHO05D003734 3.5e-19 99.4 204 33.8
TPR.G37900 Trifolium pratense HOM05D003288 ORTHO05D003734 1.3e-18 97.4 178 37.6
CSS0049339 Camellia sinensis var. sinensis HOM05D003288 ORTHO05D003734 1.7e-18 97.1 55 90.9
Duzib138G1645 Durio zibethinus HOM05D003288 ORTHO05D003734 2.3e-18 96.7 204 40.2
Potri.017G137100 Populus trichocarpa HOM05D003288 ORTHO05D003734 2.3e-18 96.7 203 37.9
QL08p029080 Quercus lobata HOM05D003288 ORTHO05D003734 2.3e-18 96.7 112 49.1
Glyma.05G018700 Glycine max HOM05D003288 ORTHO05D003734 3.9e-18 95.9 200 40.0
HPP92_013124 Vanilla planifolia HOM05D003288 ORTHO05D003734 5.1e-18 95.5 71 63.4
CARHR268800 Cardamine hirsuta HOM05D003288 ORTHO05D003734 6.6e-18 95.1 99 48.5
Atru.chr6.3343 Acer truncatum HOM05D003288 ORTHO05D003734 8.6e-18 94.7 81 59.3
Aa31LG2G2840 Aethionema arabicum HOM05D003288 ORTHO05D003734 8.6e-18 94.7 111 44.1
Oeu048956.1 Olea europaea HOM05D003288 ORTHO05D003734 8.6e-18 94.7 112 48.2
Glyma.18G042400 Glycine max HOM05D003288 ORTHO05D003734 1.9e-17 93.6 127 44.9
Rhsim10G0181900 Rhododendron simsii HOM05D003288 ORTHO05D003734 5.6e-17 92.0 135 44.4
Lsat_1_v5_gn_3_125960 Lactuca sativa HOM05D003288 ORTHO05D003734 1.2e-16 90.9 52 82.7
PSO210G3300 Papaver somniferum HOM05D003288 ORTHO05D003734 2.8e-16 89.7 60 71.7
THA.LOC104805978 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 4.7e-16 89.0 120 40.8
HanXRQChr03g0092541 Helianthus annuus HOM05D003288 ORTHO05D003734 3.1e-15 86.3 203 31.0
Psat1g016080 Pisum sativum HOM05D003288 ORTHO05D003734 1.2e-14 84.3 55 72.7
Peaxi162Scf00120g00813 Petunia axillaris HOM05D003288 ORTHO05D003734 2.6e-14 83.2 201 31.3
Medtr2g063823 Medicago truncatula HOM05D003288 ORTHO05D003734 3.4e-14 82.8 54 72.2
ClCG05G010520 Citrullus lanatus HOM05D003288 ORTHO05D003734 4.4e-14 82.4 87 51.7
Medtr6g091980 Medicago truncatula HOM05D003288 ORTHO05D003734 4.4e-14 82.4 57 68.4
C03p16470 Brassica napus HOM05D003288 ORTHO05D003734 5.8e-14 82.0 203 29.1
BolC3t14067H Brassica oleracea HOM05D003288 ORTHO05D003734 5.8e-14 82.0 203 29.1
RcHm_v2.0_Chr2g0157531 Rosa chinensis HOM05D003288 ORTHO05D003734 5.8e-14 82.0 135 40.0
HanXRQChr09g0261651 Helianthus annuus HOM05D003288 ORTHO05D003734 7.6e-14 81.6 130 49.2
BraA03t10702Z Brassica rapa HOM05D003288 ORTHO05D003734 9.9e-14 81.3 203 28.6
Medtr2g063863 Medicago truncatula HOM05D003288 ORTHO05D003734 1.3e-13 80.9 54 70.4
Psat0s1991g0080 Pisum sativum HOM05D003288 ORTHO05D003734 1.3e-13 80.9 56 67.9
FAN09G2221 Fragaria x ananassa HOM05D003288 ORTHO05D003734 1.7e-13 80.5 111 40.5
THA.LOC109115998 Tarenaya hassleriana HOM05D003288 ORTHO05D003734 1.7e-13 80.5 100 44.0
DCAR_004634 Daucus carota HOM05D003288 ORTHO05D003734 2.9e-13 79.7 104 42.3
Os07g0668100 Oryza sativa ssp. japonica HOM05D003288 ORTHO05D003734 2.9e-13 79.7 203 28.6
Dinv19061 Davidia involucrata HOM05D003288 ORTHO05D003734 3.8e-13 79.3 52 73.1
Eucgr.F02892 Eucalyptus grandis HOM05D003288 ORTHO05D003734 4.9e-13 79.0 203 38.9
FAN02G4572 Fragaria x ananassa HOM05D003288 ORTHO05D003734 8.4e-13 78.2 210 36.7
A03p14030 Brassica napus HOM05D003288 ORTHO05D003734 1.9e-12 77.0 203 26.6
RcHm_v2.0_Chr2g0139401 Rosa chinensis HOM05D003288 ORTHO05D003734 9.2e-12 74.7 154 44.8
VMungo0331G0333 Vigna mungo HOM05D003288 ORTHO05D003734 2.1e-11 73.6 74 51.4
Hma1.2p1_1386F.1_g279840 Hydrangea macrophylla HOM05D003288 ORTHO05D003734 6.0e-11 72.0 74 48.6
A10p16000 Brassica napus HOM05D003288 ORTHO05D003734 7.8e-11 71.6 71 52.1
VMungo0331G0952 Vigna mungo HOM05D003288 ORTHO05D003734 1.1e-09 67.8 55 60.0
Mapoly0046s0117 Marchantia polymorpha HOM05D003288 ORTHO05D003734 5.6e-09 65.5 135 31.1
Nitab4.5_0001781g0030 Nicotiana tabacum HOM05D003288 ORTHO05D003734 9.6e-09 64.7 202 28.2
Pp3c8_19560 Physcomitrium patens HOM05D003288 ORTHO05D003734 2.8e-08 63.2 143 28.7
A10p12610 Brassica napus HOM05D003288 ORTHO05D003734 4.0e-07 59.3 45 60.0
CBR_g12548 Chara braunii HOM05D003288 ORTHO05D003734 4.0e-07 59.3 69 40.6
Sp6g17370 Schrenkiella parvula HOM05D003288 ORTHO05D003734 1.5e-06 57.4 44 59.1
BcaB08g35905 Brassica carinata HOM05D003288 ORTHO05D003734 2.6e-06 56.6 43 60.5
BcaNung05847 Brassica carinata HOM05D003288 ORTHO05D003734 2.6e-06 56.6 43 60.5
C09p46140 Brassica napus HOM05D003288 ORTHO05D003734 2.6e-06 56.6 43 60.5
BolC9t57480H Brassica oleracea HOM05D003288 ORTHO05D003734 2.6e-06 56.6 43 60.5


User provided reference genes

Program Settings