Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001350 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 0.0e+00 1080.5 524 100.0
Actinidia09446 Actinidia chinensis HOM05D003954 ORTHO05D004627 5.9e-281 970.3 524 88.5
Actinidia39784 Actinidia chinensis HOM05D003954 ORTHO05D004627 8.8e-277 956.4 524 87.6
vmacro06252 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 1.6e-273 945.7 521 86.6
Hma1.2p1_0571F.1_g180650 Hydrangea macrophylla HOM05D003954 ORTHO05D004627 2.0e-273 945.3 521 86.4
Actinidia07454 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.5e-273 944.5 555 83.6
Cpa.g.sc40.95 Carica papaya HOM05D003954 ORTHO05D004627 1.3e-267 926.0 521 84.6
Oeu064178.1 Olea europaea HOM05D003954 ORTHO05D004627 7.0e-266 920.2 521 84.1
Ciclev10008006m.g Citrus clementina HOM05D003954 ORTHO05D004627 1.0e-264 916.4 521 83.3
SGA_v2.0_scaffold62G21557 Striga asiatica HOM05D003954 ORTHO05D004627 2.2e-264 915.2 521 82.9
TWI34G0439 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 6.5e-264 913.7 521 82.9
Manes.16G108600 Manihot esculenta HOM05D003954 ORTHO05D004627 1.5e-263 912.5 519 83.2
Manes.03G027300 Manihot esculenta HOM05D003954 ORTHO05D004627 9.4e-263 909.8 519 82.9
Cc06_g10470 Coffea canephora HOM05D003954 ORTHO05D004627 4.7e-262 907.5 523 83.4
Thecc.09G100700 Theobroma cacao HOM05D003954 ORTHO05D004627 2.3e-261 905.2 521 82.1
Eucgr.C03729 Eucalyptus grandis HOM05D003954 ORTHO05D004627 2.6e-260 901.7 521 82.5
Nitab4.5_0005668g0030 Nicotiana tabacum HOM05D003954 ORTHO05D004627 3.4e-260 901.4 521 83.5
Cfa003181 Carpinus fangiana HOM05D003954 ORTHO05D004627 7.5e-260 900.2 521 81.2
Rhsim05G0040200 Rhododendron simsii HOM05D003954 ORTHO05D004627 1.3e-259 899.4 522 83.5
MSTRG.19554 Avicennia marina HOM05D003954 ORTHO05D004627 2.8e-259 898.3 518 83.0
Duzib168G1367 Durio zibethinus HOM05D003954 ORTHO05D004627 3.7e-259 897.9 521 81.6
Migut.K00540 Erythranthe guttata HOM05D003954 ORTHO05D004627 8.3e-259 896.7 521 80.8
EL10Ac8g18378 Beta vulgaris HOM05D003954 ORTHO05D004627 3.5e-257 891.3 521 80.6
CiPaw.04G158000 Carya illinoinensis HOM05D003954 ORTHO05D004627 4.5e-257 891.0 521 80.4
Nitab4.5_0000566g0060 Nicotiana tabacum HOM05D003954 ORTHO05D004627 1.3e-256 889.4 519 82.7
Gohir.A06G067200 Gossypium hirsutum HOM05D003954 ORTHO05D004627 2.3e-256 888.6 518 80.9
Gohir.D06G065800 Gossypium hirsutum HOM05D003954 ORTHO05D004627 3.8e-256 887.9 518 80.5
Migut.J01101 Erythranthe guttata HOM05D003954 ORTHO05D004627 5.0e-256 887.5 517 81.6
Hund09103 Selenicereus undatus HOM05D003954 ORTHO05D004627 6.6e-256 887.1 521 80.0
GSVIVG01015303001 Vitis vinifera HOM05D003954 ORTHO05D004627 1.5e-255 885.9 518 80.9
Potri.018G087700 Populus trichocarpa HOM05D003954 ORTHO05D004627 2.5e-255 885.2 517 80.9
QL02p041611 Quercus lobata HOM05D003954 ORTHO05D004627 4.3e-255 884.4 520 80.4
Phvul.002G308700 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 5.6e-255 884.0 519 80.7
Sp3g33220 Schrenkiella parvula HOM05D003954 ORTHO05D004627 7.3e-255 883.6 521 80.6
VMungo0251G2014 Vigna mungo HOM05D003954 ORTHO05D004627 7.3e-255 883.6 519 80.7
CiPaw.03G225300 Carya illinoinensis HOM05D003954 ORTHO05D004627 9.5e-255 883.2 521 79.1
Glyma.08G033600 Glycine max HOM05D003954 ORTHO05D004627 9.5e-255 883.2 519 80.7
Peaxi162Scf00665g00340 Petunia axillaris HOM05D003954 ORTHO05D004627 2.1e-254 882.1 521 81.2
CARHR110320 Cardamine hirsuta HOM05D003954 ORTHO05D004627 2.8e-254 881.7 521 79.3
MD02G1065600 Malus domestica HOM05D003954 ORTHO05D004627 3.6e-254 881.3 524 80.5
Thhalv10001962m.g Eutrema salsugineum HOM05D003954 ORTHO05D004627 6.1e-254 880.6 521 80.0
MD15G1196500 Malus domestica HOM05D003954 ORTHO05D004627 6.1e-254 880.6 522 80.5
Ca_17364_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.0e-253 879.8 517 80.1
Sabra18G0076000 Salix brachista HOM05D003954 ORTHO05D004627 1.4e-253 879.4 514 80.5
Potri.006G164864 Populus trichocarpa HOM05D003954 ORTHO05D004627 1.8e-253 879.0 520 80.8
CAN.G1241.30 Capsicum annuum HOM05D003954 ORTHO05D004627 2.3e-253 878.6 521 81.6
Rhsim03G0236700 Rhododendron simsii HOM05D003954 ORTHO05D004627 3.0e-253 878.2 521 82.1
RcHm_v2.0_Chr2g0091861 Rosa chinensis HOM05D003954 ORTHO05D004627 3.0e-253 878.2 516 82.0
Carub.0003s3415 Capsella rubella HOM05D003954 ORTHO05D004627 5.2e-253 877.5 521 79.8
CANSAT56G2004 Cannabis sativa HOM05D003954 ORTHO05D004627 6.8e-253 877.1 545 77.2
Gohir.A05G025900 Gossypium hirsutum HOM05D003954 ORTHO05D004627 6.8e-253 877.1 521 79.3
Gorai.009G027500 Gossypium raimondii HOM05D003954 ORTHO05D004627 6.8e-253 877.1 521 79.3
AL3G48340 Arabidopsis lyrata HOM05D003954 ORTHO05D004627 8.9e-253 876.7 521 79.8
FAN28G0221 Fragaria x ananassa HOM05D003954 ORTHO05D004627 8.9e-253 876.7 524 80.2
AT2G19880 Arabidopsis thaliana HOM05D003954 ORTHO05D004627 1.2e-252 876.3 521 79.7
THA.LOC104814571 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 2.6e-252 875.2 521 80.0
Medtr8g102500 Medicago truncatula HOM05D003954 ORTHO05D004627 3.4e-252 874.8 519 79.0
vmacro10852 Vaccinium macrocarpon HOM05D003954 ORTHO05D004627 3.4e-252 874.8 577 75.2
Glyma.05G226800 Glycine max HOM05D003954 ORTHO05D004627 4.4e-252 874.4 519 79.8
Sc08g0008010 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.7e-251 872.5 521 78.3
Aa31LG8G16830 Aethionema arabicum HOM05D003954 ORTHO05D004627 2.2e-251 872.1 521 78.7
Gorai.010G077100 Gossypium raimondii HOM05D003954 ORTHO05D004627 2.9e-251 871.7 543 76.4
FAN26G2983 Fragaria x ananassa HOM05D003954 ORTHO05D004627 3.7e-251 871.3 524 79.8
FAN19G1313 Fragaria x ananassa HOM05D003954 ORTHO05D004627 6.4e-251 870.5 524 79.6
CsaV3_1G039780 Cucumis sativus L. HOM05D003954 ORTHO05D004627 8.3e-251 870.2 522 79.1
FAN26G2948 Fragaria x ananassa HOM05D003954 ORTHO05D004627 1.8e-250 869.0 524 79.6
Dinv36687 Davidia involucrata HOM05D003954 ORTHO05D004627 3.2e-250 868.2 467 88.4
PGSC0003DMG400000296 Solanum tuberosum HOM05D003954 ORTHO05D004627 5.4e-250 867.5 521 80.6
TAR624G0841 Trochodendron aralioides HOM05D003954 ORTHO05D004627 7.0e-250 867.1 519 78.8
HanXRQChr11g0321631 Helianthus annuus HOM05D003954 ORTHO05D004627 9.2e-250 866.7 524 78.1
Lj4g0018527 Lotus japonicus HOM05D003954 ORTHO05D004627 9.2e-250 866.7 517 79.9
Gohir.D05G027400 Gossypium hirsutum HOM05D003954 ORTHO05D004627 1.2e-249 866.3 531 77.6
Sopen12g003440 Solanum pennellii HOM05D003954 ORTHO05D004627 2.0e-249 865.5 521 80.4
Solyc12g008490.2 Solanum lycopersicum HOM05D003954 ORTHO05D004627 3.5e-249 864.8 521 80.2
ECA240G1631 Erigeron canadensis HOM05D003954 ORTHO05D004627 7.8e-249 863.6 518 78.4
BcaC04g22815 Brassica carinata HOM05D003954 ORTHO05D004627 2.3e-248 862.1 518 78.8
C09p15000 Brassica napus HOM05D003954 ORTHO05D004627 2.3e-248 862.1 518 78.8
HanXRQChr09g0238881 Helianthus annuus HOM05D003954 ORTHO05D004627 6.6e-248 860.5 524 77.7
BolC9t54402H Brassica oleracea HOM05D003954 ORTHO05D004627 8.6e-248 860.1 519 78.8
Sed0027745 Sechium edule HOM05D003954 ORTHO05D004627 1.9e-247 859.0 519 78.4
BcaB08g34891 Brassica carinata HOM05D003954 ORTHO05D004627 3.3e-247 858.2 521 77.9
A09p59090 Brassica napus HOM05D003954 ORTHO05D004627 5.6e-247 857.4 521 77.5
BraA09t41292Z Brassica rapa HOM05D003954 ORTHO05D004627 5.6e-247 857.4 521 77.5
THA.LOC104804008 Tarenaya hassleriana HOM05D003954 ORTHO05D004627 7.3e-247 857.1 521 77.4
C08p42370 Brassica napus HOM05D003954 ORTHO05D004627 3.6e-246 854.7 521 77.4
BolC8t51799H Brassica oleracea HOM05D003954 ORTHO05D004627 3.6e-246 854.7 521 77.4
BraA07t27878Z Brassica rapa HOM05D003954 ORTHO05D004627 3.6e-246 854.7 518 77.6
SGA_v2.0_scaffold19G08753 Striga asiatica HOM05D003954 ORTHO05D004627 3.6e-246 854.7 531 77.4
MBI01_g10128_MAGBIO Magnolia biondii HOM05D003954 ORTHO05D004627 8.0e-246 853.6 527 76.7
BcaB03g16776 Brassica carinata HOM05D003954 ORTHO05D004627 1.4e-245 852.8 518 77.6
Lalb_Chr09g0331531 Lupinus albus HOM05D003954 ORTHO05D004627 2.3e-245 852.0 522 77.8
BcaC06g36652 Brassica carinata HOM05D003954 ORTHO05D004627 4.0e-245 851.3 518 77.4
BcaC07g41232 Brassica carinata HOM05D003954 ORTHO05D004627 4.0e-245 851.3 521 77.0
BolC7t40584H Brassica oleracea HOM05D003954 ORTHO05D004627 4.0e-245 851.3 518 77.4
A07p00800 Brassica napus HOM05D003954 ORTHO05D004627 5.2e-245 850.9 518 77.4
BraA09t36909Z Brassica rapa HOM05D003954 ORTHO05D004627 6.8e-245 850.5 522 78.0
SalBow6G3745 Salvia bowleyana HOM05D003954 ORTHO05D004627 3.7e-243 844.7 524 76.7
Lalb_Chr05g0223231 Lupinus albus HOM05D003954 ORTHO05D004627 2.4e-242 842.0 522 76.6
Psat7g016920 Pisum sativum HOM05D003954 ORTHO05D004627 1.2e-241 839.7 495 80.0
Psat1g047360 Pisum sativum HOM05D003954 ORTHO05D004627 2.0e-241 839.0 520 76.7
Atru.chr7.1463 Acer truncatum HOM05D003954 ORTHO05D004627 3.9e-240 834.7 467 84.4
PGR102G1739 Punica granatum HOM05D003954 ORTHO05D004627 8.6e-240 833.6 521 78.3
TWI32G1148 Tripterygium wilfordii HOM05D003954 ORTHO05D004627 9.5e-239 830.1 521 77.5
arahy.Tifrunner.gnm1.ann1.UV3YSF Arachis hypogaea HOM05D003954 ORTHO05D004627 3.6e-238 828.2 516 77.9
Aqoxy7G01403 Aquilegia oxysepala HOM05D003954 ORTHO05D004627 2.3e-237 825.5 512 75.8
Medtr6g088695 Medicago truncatula HOM05D003954 ORTHO05D004627 6.8e-237 823.9 520 75.4
Duzib187G1161 Durio zibethinus HOM05D003954 ORTHO05D004627 8.9e-237 823.5 521 75.6
CSS0033107 Camellia sinensis var. sinensis HOM05D003954 ORTHO05D004627 2.6e-236 822.0 522 77.6
FAN23G0884 Fragaria x ananassa HOM05D003954 ORTHO05D004627 7.5e-236 820.5 516 76.7
Lalb_Chr24g0397311 Lupinus albus HOM05D003954 ORTHO05D004627 3.7e-235 818.1 525 75.4
unitig_578.g15920 Utricularia gibba HOM05D003954 ORTHO05D004627 6.4e-235 817.4 550 73.1
PSO210G6242 Papaver somniferum HOM05D003954 ORTHO05D004627 3.2e-234 815.1 520 73.3
PSO210G3120 Papaver somniferum HOM05D003954 ORTHO05D004627 4.6e-233 811.2 523 73.0
Lj2g0001823 Lotus japonicus HOM05D003954 ORTHO05D004627 7.8e-233 810.4 521 75.6
Phvul.004G176200 Phaseolus vulgaris HOM05D003954 ORTHO05D004627 1.7e-232 809.3 520 74.4
MELO3C015411.2 Cucumis melo HOM05D003954 ORTHO05D004627 8.6e-232 807.0 473 80.1
Glyma.01G007900 Glycine max HOM05D003954 ORTHO05D004627 8.6e-232 807.0 520 74.4
Prupe.7G219900 Prunus persica HOM05D003954 ORTHO05D004627 2.5e-231 805.4 465 81.5
Nn8g39063 Nelumbo nucifera HOM05D003954 ORTHO05D004627 7.3e-231 803.9 470 81.9
Glyma.16G078400 Glycine max HOM05D003954 ORTHO05D004627 6.2e-230 800.8 522 73.4
Sed0021958 Sechium edule HOM05D003954 ORTHO05D004627 6.2e-230 800.8 468 80.8
Lsat_1_v5_gn_7_39841 Lactuca sativa HOM05D003954 ORTHO05D004627 2.0e-228 795.8 524 72.3
TAR633G1204 Trochodendron aralioides HOM05D003954 ORTHO05D004627 1.3e-227 793.1 471 79.2
Sc18g0001490 Simmondsia chinensis HOM05D003954 ORTHO05D004627 1.7e-227 792.7 477 78.6
Lalb_Chr22g0352551 Lupinus albus HOM05D003954 ORTHO05D004627 4.9e-227 791.2 554 70.6
arahy.Tifrunner.gnm1.ann1.LVXR97 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.1e-226 790.0 490 78.2
HPP92_001552 Vanilla planifolia HOM05D003954 ORTHO05D004627 3.2e-226 788.5 517 73.1
AUR62021404 Chenopodium quinoa HOM05D003954 ORTHO05D004627 1.2e-225 786.6 521 72.7
PSO063G1218 Papaver somniferum HOM05D003954 ORTHO05D004627 2.7e-225 785.4 511 73.2
ATR0681G291 Amborella trichopoda HOM05D003954 ORTHO05D004627 6.0e-225 784.3 520 71.9
AUR62010893 Chenopodium quinoa HOM05D003954 ORTHO05D004627 6.0e-225 784.3 521 72.6
PSO832G3271 Papaver somniferum HOM05D003954 ORTHO05D004627 5.1e-224 781.2 511 73.0
arahy.Tifrunner.gnm1.ann1.KIU7DS Arachis hypogaea HOM05D003954 ORTHO05D004627 1.9e-218 762.7 521 70.2
COL.COLO4_34744 Corchorus olitorius HOM05D003954 ORTHO05D004627 2.4e-218 762.3 562 68.3
arahy.Tifrunner.gnm1.ann1.1X3G68 Arachis hypogaea HOM05D003954 ORTHO05D004627 1.6e-217 759.6 521 69.9
Lj7A665G29 Lonicera japonica HOM05D003954 ORTHO05D004627 3.0e-216 755.4 504 75.0
CDE04G2595 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 6.2e-214 747.7 519 69.6
TPR.G21381 Trifolium pratense HOM05D003954 ORTHO05D004627 5.3e-213 744.6 541 68.6
CDE07G1077 Ceratophyllum demersum HOM05D003954 ORTHO05D004627 1.9e-207 726.1 521 68.7
VMungo0464G1304 Vigna mungo HOM05D003954 ORTHO05D004627 7.4e-207 724.2 520 69.4
Ah.14g083230 Amaranthus hybridus HOM05D003954 ORTHO05D004627 1.5e-204 716.5 521 67.2
Dinv41667 Davidia involucrata HOM05D003954 ORTHO05D004627 7.9e-201 704.1 381 87.9
Lsat_1_v5_gn_5_144920 Lactuca sativa HOM05D003954 ORTHO05D004627 6.3e-190 667.9 481 67.6
FvH4_1g06110 Fragaria vesca HOM05D003954 ORTHO05D004627 9.0e-189 664.1 378 82.3
TPR.G23479 Trifolium pratense HOM05D003954 ORTHO05D004627 1.1e-186 657.1 383 81.5
Medtr8g102490 Medicago truncatula HOM05D003954 ORTHO05D004627 2.3e-184 649.4 479 67.8
SHI02691 Sapria himalayana HOM05D003954 ORTHO05D004627 1.3e-182 643.7 562 59.8
SMO367G0175 Selaginella moellendorffii HOM05D003954 ORTHO05D004627 2.8e-174 615.9 449 63.3
AagrBONN_evm.TU.Sc2ySwM_228.2751 Anthoceros agrestis HOM05D003954 ORTHO05D004627 2.1e-169 599.7 487 59.5
Pp3c16_7990 Physcomitrium patens HOM05D003954 ORTHO05D004627 9.7e-159 564.3 476 56.7
Mapoly0082s0037 Marchantia polymorpha HOM05D003954 ORTHO05D004627 8.3e-150 534.6 474 54.9
DCAR_028664 Daucus carota HOM05D003954 ORTHO05D004627 2.7e-148 529.6 353 72.5
Lj4C389T2 Lonicera japonica HOM05D003954 ORTHO05D004627 2.6e-135 486.5 289 82.0
A09p12640 Brassica napus HOM05D003954 ORTHO05D004627 5.7e-135 485.3 293 79.2
CAN.G3537.1 Capsicum annuum HOM05D003954 ORTHO05D004627 1.3e-134 484.2 289 82.0
Ca_25572_v3 Cicer arietinum L. HOM05D003954 ORTHO05D004627 1.5e-130 470.7 292 76.7
TAR626G0478 Trochodendron aralioides HOM05D003954 ORTHO05D004627 4.3e-130 469.2 266 80.8
Zm00001eb365210 Zea mays HOM05D003954 ORTHO05D004627 4.9e-126 455.7 286 74.1
SEGI_27682 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.8e-104 384.0 246 72.8
ClCG03G016150 Citrullus lanatus HOM05D003954 ORTHO05D004627 3.8e-102 376.3 245 74.3
Actinidia17525 Actinidia chinensis HOM05D003954 ORTHO05D004627 4.0e-96 356.3 207 84.1
MCO02G294 Micromonas commoda HOM05D003954 ORTHO05D004627 4.4e-58 229.9 474 33.1
PRCOL_00001038 Prasinoderma coloniale HOM05D003954 ORTHO05D004627 4.5e-55 219.9 476 33.0
TPR.G23455 Trifolium pratense HOM05D003954 ORTHO05D004627 5.0e-54 216.5 132 73.5
Actinidia32652 Actinidia chinensis HOM05D003954 ORTHO05D004627 1.0e-46 192.2 204 53.4
Oeu053184.3 Olea europaea HOM05D000113 ORTHO05D010194 1.0e-38 165.6 109 70.6
SEGI_30237 Sequoiadendron giganteum HOM05D003954 ORTHO05D004627 1.0e-35 155.6 144 52.8
Os01g0906000 Oryza sativa ssp. japonica HOM05D003954 ORTHO05D004627 1.6e-28 131.7 86 73.3
Zm00001eb132850 Zea mays HOM05D003954 ORTHO05D004627 1.5e-21 108.6 59 78.0
Actinidia34604 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.3e-21 107.5 143 50.3
MD01G1180200 Malus domestica HOM05D003954 ORTHO05D004627 4.7e-20 103.6 60 76.7
Cre09.g409250 Chlamydomonas reinhardtii HOM05D003954 ORTHO05D004627 2.9e-17 94.4 149 36.9
Actinidia32651 Actinidia chinensis HOM05D003954 ORTHO05D004627 3.2e-16 90.9 165 40.6
CAN.G195.50 Capsicum annuum HOM05D003954 ORTHO05D004627 7.0e-08 63.2 47 61.7
MBI06_g23363_MAGBIO Magnolia biondii HOM05D006789 ORTHO05D008460 1.0e-06 59.3 37 73.0


User provided reference genes

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