Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001349 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.2e-82 309.7 150 100.0
CSS0013781 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 8.9e-81 303.5 150 98.7
CSS0040335 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 4.9e-79 297.7 150 97.3
CSS0014990 Camellia sinensis var. sinensis HOM05D004294 ORTHO05D004899 1.7e-60 236.1 170 75.3
Rhsim08G0211800 Rhododendron simsii HOM05D004294 ORTHO05D004899 1.7e-52 209.5 170 68.2
Actinidia15750 Actinidia chinensis HOM05D004294 ORTHO05D004899 1.7e-47 193.0 170 64.7
vmacro19009 Vaccinium macrocarpon HOM05D004294 ORTHO05D004899 3.2e-46 188.7 170 62.4
Dinv43581 Davidia involucrata HOM05D004294 ORTHO05D004899 1.0e-44 183.7 170 59.4
GSVIVG01037228001 Vitis vinifera HOM05D004294 ORTHO05D004899 6.6e-44 181.0 170 58.8
Cfa022163 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.6e-43 177.9 168 57.7
GSVIVG01026772001 Vitis vinifera HOM05D004294 ORTHO05D004899 7.3e-43 177.6 170 59.4
Haze_02916 Corylus avellana HOM05D004294 ORTHO05D004899 1.4e-41 173.3 167 56.9
Cc02_g25750 Coffea canephora HOM05D004294 ORTHO05D004899 1.8e-41 172.9 166 59.0
Potri.002G134800 Populus trichocarpa HOM05D004294 ORTHO05D004899 4.0e-41 171.8 169 56.2
Sabra02G0105000 Salix brachista HOM05D004294 ORTHO05D004899 1.5e-40 169.9 169 56.2
CiPaw.14G015600 Carya illinoinensis HOM05D004294 ORTHO05D004899 3.4e-40 168.7 166 56.6
CANSAT35G1700 Cannabis sativa HOM05D004294 ORTHO05D004899 5.8e-40 167.9 170 55.3
Hma1.2p1_0973F.1_g243000 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.6e-40 167.5 170 55.9
Hma1.2p1_1440F.1_g283530 Hydrangea macrophylla HOM05D004294 ORTHO05D004899 7.6e-40 167.5 170 56.5
Thecc.04G104900 Theobroma cacao HOM05D004294 ORTHO05D004899 9.9e-40 167.2 172 52.9
Lj3g0019907 Lotus japonicus HOM05D004294 ORTHO05D004899 1.3e-39 166.8 167 56.9
CiPaw.13G021200 Carya illinoinensis HOM05D004294 ORTHO05D004899 1.7e-39 166.4 167 56.3
TAR629G2021 Trochodendron aralioides HOM05D004294 ORTHO05D004899 2.2e-39 166.0 170 55.9
QL04p025854 Quercus lobata HOM05D004294 ORTHO05D004899 2.9e-39 165.6 167 56.3
Medtr2g084540 Medicago truncatula HOM05D004294 ORTHO05D004899 8.4e-39 164.1 167 54.5
Glyma.13G219700 Glycine max HOM05D004294 ORTHO05D004899 1.9e-38 162.9 167 55.7
Lj3g0025421 Lotus japonicus HOM05D004294 ORTHO05D004899 5.4e-38 161.4 167 55.1
Solyc01g150146.1 Solanum lycopersicum HOM05D004294 ORTHO05D004899 5.4e-38 161.4 165 55.2
Sopen01g035370 Solanum pennellii HOM05D004294 ORTHO05D004899 5.4e-38 161.4 165 55.2
PGSC0003DMG400001711 Solanum tuberosum HOM05D004294 ORTHO05D004899 9.3e-38 160.6 165 55.2
Cpa.g.sc52.62 Carica papaya HOM05D004294 ORTHO05D004899 1.2e-37 160.2 170 52.9
Psat2g182760 Pisum sativum HOM05D004294 ORTHO05D004899 2.1e-37 159.5 167 53.9
AUR62021407 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.7e-37 159.1 170 55.3
Eucgr.E01714 Eucalyptus grandis HOM05D004294 ORTHO05D004899 2.7e-37 159.1 167 53.3
Lsat_1_v5_gn_4_36140 Lactuca sativa HOM05D004294 ORTHO05D004899 4.6e-37 158.3 167 53.9
SGA_v2.0_scaffold45G17247 Striga asiatica HOM05D004294 ORTHO05D004899 4.6e-37 158.3 170 52.4
TWI75G0011 Tripterygium wilfordii HOM05D004294 ORTHO05D004899 4.6e-37 158.3 170 52.4
ECA234G1894 Erigeron canadensis HOM05D004294 ORTHO05D004899 6.0e-37 157.9 169 53.3
Nitab4.5_0006873g0030 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.0e-36 157.1 169 54.4
AUR62021410 Chenopodium quinoa HOM05D004294 ORTHO05D004899 1.3e-36 156.8 170 54.7
ECA234G1071 Erigeron canadensis HOM05D004294 ORTHO05D004899 1.8e-36 156.4 170 53.5
Nitab4.5_0004088g0110 Nicotiana tabacum HOM05D004294 ORTHO05D004899 1.8e-36 156.4 165 55.2
TPR.G32380 Trifolium pratense HOM05D004294 ORTHO05D004899 2.3e-36 156.0 167 52.7
Lalb_Chr14g0374351 Lupinus albus HOM05D004294 ORTHO05D004899 3.0e-36 155.6 166 53.0
CAN.G756.9 Capsicum annuum HOM05D004294 ORTHO05D004899 5.1e-36 154.8 165 52.7
Ca_01696_v3 Cicer arietinum L. HOM05D004294 ORTHO05D004899 5.1e-36 154.8 166 53.6
HanXRQChr17g0545891 Helianthus annuus HOM05D004294 ORTHO05D004899 1.1e-35 153.7 170 53.5
Phvul.006G166400 Phaseolus vulgaris HOM05D004294 ORTHO05D004899 1.5e-35 153.3 167 54.5
Manes.02G122400 Manihot esculenta HOM05D004294 ORTHO05D004899 1.9e-35 152.9 170 51.8
Gohir.D08G177200 Gossypium hirsutum HOM05D004294 ORTHO05D004899 3.3e-35 152.1 173 52.0
Gorai.004G185600 Gossypium raimondii HOM05D004294 ORTHO05D004899 3.3e-35 152.1 173 52.0
Medtr2g022850 Medicago truncatula HOM05D004294 ORTHO05D004899 3.3e-35 152.1 164 53.7
Gohir.A08G156800 Gossypium hirsutum HOM05D004294 ORTHO05D004899 4.3e-35 151.8 173 52.0
Peaxi162Scf00102g01053 Petunia axillaris HOM05D004294 ORTHO05D004899 4.3e-35 151.8 166 53.6
VMungo0540G0738 Vigna mungo HOM05D004294 ORTHO05D004899 5.6e-35 151.4 167 53.3
TAR371G1121 Trochodendron aralioides HOM05D004294 ORTHO05D004899 7.4e-35 151.0 160 54.4
Ah.09g230610 Amaranthus hybridus HOM05D004294 ORTHO05D004899 9.6e-35 150.6 167 52.7
HanXRQChr10g0302581 Helianthus annuus HOM05D004294 ORTHO05D004899 1.3e-34 150.2 168 50.6
PSO675G3209 Papaver somniferum HOM05D004294 ORTHO05D004899 1.3e-34 150.2 166 53.0
SalBow5G4501 Salvia bowleyana HOM05D004294 ORTHO05D004899 1.3e-34 150.2 170 51.2
AUR62010895 Chenopodium quinoa HOM05D004294 ORTHO05D004899 2.1e-34 149.4 170 52.9
Glyma.15G092700 Glycine max HOM05D004294 ORTHO05D004899 2.8e-34 149.1 167 52.7
PSO541G2071 Papaver somniferum HOM05D004294 ORTHO05D004899 3.7e-34 148.7 166 52.4
PSO063G7341 Papaver somniferum HOM05D004294 ORTHO05D004899 4.8e-34 148.3 166 53.0
PSO782G1693 Papaver somniferum HOM05D004294 ORTHO05D004899 4.8e-34 148.3 166 51.8
MSTRG.20657 Avicennia marina HOM05D004294 ORTHO05D004899 1.1e-33 147.1 170 51.2
ClCG05G002810 Citrullus lanatus HOM05D004294 ORTHO05D004899 4.0e-33 145.2 170 51.8
Sp4g08170 Schrenkiella parvula HOM05D004294 ORTHO05D004899 6.9e-33 144.4 166 51.8
arahy.Tifrunner.gnm1.ann1.ZAL8K4 Arachis hypogaea HOM05D004294 ORTHO05D004899 9.0e-33 144.1 166 51.8
Sed0018514 Sechium edule HOM05D004294 ORTHO05D004899 2.6e-32 142.5 168 48.8
CsaV3_3G010340 Cucumis sativus L. HOM05D004294 ORTHO05D004899 1.3e-31 140.2 168 51.2
unitig_0.g1581 Utricularia gibba HOM05D002708 ORTHO05D003516 1.7e-31 139.8 172 46.5
MD02G1225800 Malus domestica HOM05D004294 ORTHO05D004899 2.2e-31 139.4 165 51.5
Thhalv10017327m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 2.9e-31 139.0 166 50.0
Migut.K00778 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.4e-30 136.7 171 47.4
MD07G1088000 Malus domestica HOM05D004294 ORTHO05D004899 1.4e-30 136.7 165 51.5
Carub.0004s2151 Capsella rubella HOM05D004294 ORTHO05D004899 2.4e-30 136.0 166 48.2
AL4G36820 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 3.2e-30 135.6 166 48.2
Sp4g21750 Schrenkiella parvula HOM05D004294 ORTHO05D004899 3.2e-30 135.6 166 49.4
BcaC02g12072 Brassica carinata HOM05D004294 ORTHO05D004899 5.5e-30 134.8 167 49.7
BolC4t22431H Brassica oleracea HOM05D004294 ORTHO05D004899 5.5e-30 134.8 167 49.7
Prupe.2G114700 Prunus persica HOM05D004294 ORTHO05D004899 5.5e-30 134.8 158 51.9
C04p08280 Brassica napus HOM05D004294 ORTHO05D004899 7.1e-30 134.4 167 49.7
Atru.chr5.64 Acer truncatum HOM05D004294 ORTHO05D004899 9.3e-30 134.0 167 49.1
Aa31LG5G20440 Aethionema arabicum HOM05D004294 ORTHO05D004899 9.3e-30 134.0 166 47.6
AT2G39445 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 9.3e-30 134.0 166 47.0
Atru.chr5.34 Acer truncatum HOM05D004294 ORTHO05D004899 2.1e-29 132.9 167 49.7
CARHR134310 Cardamine hirsuta HOM05D004294 ORTHO05D004899 2.1e-29 132.9 168 49.4
Duzib138G0823 Durio zibethinus HOM05D004294 ORTHO05D004899 4.6e-29 131.7 103 65.0
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 7.9e-29 131.0 157 51.0
BcaB02g09119 Brassica carinata HOM05D004294 ORTHO05D004899 7.9e-29 131.0 167 48.5
A05p06950 Brassica napus HOM05D004294 ORTHO05D004899 7.9e-29 131.0 167 48.5
Carub.0004s0710 Capsella rubella HOM05D004294 ORTHO05D004899 7.9e-29 131.0 168 47.0
Gorai.004G185000 Gossypium raimondii HOM05D004294 ORTHO05D004899 7.9e-29 131.0 171 49.1
FAN18G1057 Fragaria x ananassa HOM05D004294 ORTHO05D004899 1.0e-28 130.6 166 49.4
Sed0004229 Sechium edule HOM05D004294 ORTHO05D004899 1.0e-28 130.6 174 48.3
Aa31LG5G20160 Aethionema arabicum HOM05D004294 ORTHO05D004899 1.8e-28 129.8 166 47.6
BraA05t19659Z Brassica rapa HOM05D004294 ORTHO05D004899 1.8e-28 129.8 167 47.9
FvH4_5g29260 Fragaria vesca HOM05D004294 ORTHO05D004899 2.3e-28 129.4 166 49.4
FvH4_7g08700 Fragaria vesca HOM05D004294 ORTHO05D004899 3.0e-28 129.0 166 47.6
FAN06G3965 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.0e-28 129.0 166 47.6
ATR0626G354 Amborella trichopoda HOM05D004294 ORTHO05D004899 5.1e-28 128.3 164 47.6
FAN03G1356 Fragaria x ananassa HOM05D004294 ORTHO05D004899 3.3e-27 125.6 166 47.6
DCAR_029527 Daucus carota HOM05D004294 ORTHO05D004899 4.3e-27 125.2 167 44.9
RcHm_v2.0_Chr1g0343921 Rosa chinensis HOM05D004294 ORTHO05D004899 4.3e-27 125.2 166 48.8
CDE12G0039 Ceratophyllum demersum HOM05D004294 ORTHO05D004899 1.3e-26 123.6 165 47.3
RcHm_v2.0_Chr5g0055501 Rosa chinensis HOM05D004294 ORTHO05D004899 1.3e-26 123.6 166 48.8
MELO3C031598.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.6e-26 123.2 170 45.3
Hund09105 Selenicereus undatus HOM05D004294 ORTHO05D004899 1.8e-25 119.8 98 65.3
Gohir.D08G177066 Gossypium hirsutum HOM05D004294 ORTHO05D004899 2.4e-25 119.4 170 45.3
Potri.014G043400 Populus trichocarpa HOM05D004294 ORTHO05D004899 1.2e-24 117.1 127 54.3
Nn6g34994 Nelumbo nucifera HOM05D004294 ORTHO05D004899 1.5e-24 116.7 99 62.6
BcaB06g29086 Brassica carinata HOM05D004294 ORTHO05D004899 1.7e-23 113.2 168 44.0
C04p67330 Brassica napus HOM05D004294 ORTHO05D004899 2.2e-23 112.8 166 45.2
BolC4t28228H Brassica oleracea HOM05D004294 ORTHO05D004899 2.2e-23 112.8 166 45.2
HPP92_020692 Vanilla planifolia HOM05D004294 ORTHO05D004899 6.5e-23 111.3 164 42.7
EL10Ac8g18381 Beta vulgaris HOM05D004294 ORTHO05D004899 3.2e-22 109.0 150 48.0
BcaC02g07404 Brassica carinata HOM05D004294 ORTHO05D004899 9.3e-22 107.5 167 44.3
MELO3C031600.2 Cucumis melo HOM05D004294 ORTHO05D004899 1.2e-21 107.1 99 59.6
Ciclev10022425m.g Citrus clementina HOM05D004294 ORTHO05D004899 1.6e-21 106.7 99 59.6
PGSC0003DMG400001683 Solanum tuberosum HOM05D004294 ORTHO05D004899 1.6e-21 106.7 146 47.3
AL2G15030 Arabidopsis lyrata HOM05D004294 ORTHO05D004899 2.1e-21 106.3 166 41.6
BraA04t18462Z Brassica rapa HOM05D004294 ORTHO05D004899 1.3e-20 103.6 162 43.2
Zm00001eb097750 Zea mays HOM05D004294 ORTHO05D004899 8.7e-20 100.9 164 42.7
MELO3C031599.2 Cucumis melo HOM05D004294 ORTHO05D004899 2.5e-19 99.4 87 59.8
AT1G61280 Arabidopsis thaliana HOM05D004294 ORTHO05D004899 7.4e-19 97.8 124 46.0
PGSC0003DMG400034273 Solanum tuberosum HOM05D004294 ORTHO05D004899 2.6e-16 89.4 62 71.0
AagrBONN_evm.TU.Sc2ySwM_368.1700 Anthoceros agrestis HOM05D004294 ORTHO05D004899 3.4e-16 89.0 159 39.0
PGSC0003DMG400001681 Solanum tuberosum HOM05D004294 ORTHO05D004899 4.5e-16 88.6 67 67.2
AagrBONN_evm.TU.Sc2ySwM_362.275 Anthoceros agrestis HOM05D004294 ORTHO05D004899 2.2e-15 86.3 157 39.5
TPR.G20146 Trifolium pratense HOM05D004294 ORTHO05D004899 2.9e-15 85.9 68 63.2
A04p30460 Brassica napus HOM05D004294 ORTHO05D004899 5.0e-15 85.1 130 44.6
ECA234G1984 Erigeron canadensis HOM05D004294 ORTHO05D004899 8.5e-15 84.3 65 72.3
Pp3c4_15230 Physcomitrium patens HOM05D004294 ORTHO05D004899 8.5e-15 84.3 162 38.9
Actinidia18927 Actinidia chinensis HOM05D004294 ORTHO05D004899 4.2e-14 82.0 63 73.0
BcaB02g09120 Brassica carinata HOM05D004294 ORTHO05D004899 4.2e-14 82.0 112 46.4
CARHR051330 Cardamine hirsuta HOM05D004294 ORTHO05D004899 9.3e-14 80.9 119 45.4
CBR_g12382 Chara braunii HOM05D004294 ORTHO05D004899 1.4e-12 77.0 135 40.0
Zm00001eb212340 Zea mays HOM05D004294 ORTHO05D004899 1.4e-12 77.0 86 51.2
Thhalv10024054m.g Eutrema salsugineum HOM05D004294 ORTHO05D004899 1.8e-12 76.6 128 39.8
Sabra14G0031400 Salix brachista HOM05D004294 ORTHO05D004899 3.9e-12 75.5 115 39.1
SMO232G0013 Selaginella moellendorffii HOM05D004294 ORTHO05D004899 6.7e-12 74.7 122 36.9
SalBow4G1179 Salvia bowleyana HOM05D004294 ORTHO05D004899 2.5e-11 72.8 136 33.8
Carub.0002s0388 Capsella rubella HOM05D004294 ORTHO05D004899 5.7e-11 71.6 126 39.7
Cfa019943 Carpinus fangiana HOM05D004294 ORTHO05D004899 5.7e-11 71.6 62 59.7
unitig_0.g1328 Utricularia gibba HOM05D004294 ORTHO05D004899 9.7e-11 70.9 168 35.7
Cfa001861 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-10 70.1 58 62.1
Cfa018800 Carpinus fangiana HOM05D004294 ORTHO05D004899 1.7e-10 70.1 58 62.1
Cfa018117 Carpinus fangiana HOM05D004294 ORTHO05D004899 8.2e-10 67.8 54 63.0
Migut.N01709 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.8e-09 66.6 157 38.2
Os03g0640300 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 2.4e-09 66.2 81 44.4
Aqoxy3G02531 Aquilegia oxysepala HOM05D004294 ORTHO05D004899 3.1e-09 65.9 101 40.6
Mapoly0030s0033 Marchantia polymorpha HOM05D004294 ORTHO05D004899 6.9e-09 64.7 47 57.4
arahy.Tifrunner.gnm1.ann1.L9EVLZ Arachis hypogaea HOM05D047065 ORTHO05D004899 9.1e-09 64.3 117 37.6
Os10g0569100 Oryza sativa ssp. japonica HOM05D004294 ORTHO05D004899 1.2e-08 63.9 58 48.3
Migut.K01222 Erythranthe guttata HOM05D004294 ORTHO05D004899 1.5e-08 63.5 90 44.4
HPP92_020794 Vanilla planifolia HOM05D000509 ORTHO05D006393 1.4e-06 57.0 60 50.0
COL.COLO4_08476 Corchorus olitorius HOM05D004294 ORTHO05D004899 7.2e-06 54.7 42 69.0


User provided reference genes

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