Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001348 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.6e-33 145.6 79 100.0
CSS0035762 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 1.2e-31 139.4 79 96.2
Dinv17000 Davidia involucrata HOM05D002160 ORTHO05D002012 5.8e-23 110.5 79 83.5
Dinv42949 Davidia involucrata HOM05D002160 ORTHO05D002012 5.8e-23 110.5 79 83.5
Dinv43151 Davidia involucrata HOM05D002160 ORTHO05D002012 5.8e-23 110.5 79 83.5
Dinv12424 Davidia involucrata HOM05D002160 ORTHO05D002012 7.6e-23 110.2 79 83.5
Hma1.2p1_0035F.1_g022410 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 3.2e-21 104.8 81 64.2
Hma1.2p1_0035F.1_g022400 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 2.1e-20 102.1 79 69.6
Hma1.2p1_0418F.1_g149080 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 6.0e-20 100.5 79 70.9
CSS0041171 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 2.1e-17 92.0 67 85.1
HanXRQChr11g0350841 Helianthus annuus HOM05D002160 ORTHO05D002012 4.8e-17 90.9 79 69.6
Lsat_1_v5_gn_9_23460 Lactuca sativa HOM05D002160 ORTHO05D002012 8.1e-17 90.1 79 68.4
CSS0020810 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 4.0e-16 87.8 67 82.1
ECA247G1660 Erigeron canadensis HOM05D002160 ORTHO05D002012 4.0e-16 87.8 79 67.1
Hma1.2p1_0418F.1_g149100 Hydrangea macrophylla HOM05D002160 ORTHO05D002012 5.8e-15 84.0 79 64.6
DCAR_018908 Daucus carota HOM05D002160 ORTHO05D002012 9.9e-15 83.2 79 65.8
QL07p048278 Quercus lobata HOM05D002160 ORTHO05D002012 9.9e-15 83.2 79 65.8
CAN.G394.56 Capsicum annuum HOM05D002160 ORTHO05D002012 2.9e-14 81.6 79 65.8
ECA236G3652 Erigeron canadensis HOM05D002160 ORTHO05D002012 2.9e-14 81.6 79 63.3
Atru.chr3.3902 Acer truncatum HOM05D002160 ORTHO05D002012 3.8e-14 81.3 81 69.1
CSS0041767 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.4e-14 80.1 67 77.6
Cc01_g12850 Coffea canephora HOM05D002160 ORTHO05D002012 8.4e-14 80.1 79 65.8
GSVIVG01034174001 Vitis vinifera HOM05D002160 ORTHO05D002012 8.4e-14 80.1 81 69.1
CiPaw.10G145500 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.1e-13 79.7 80 63.8
CiPaw.09G192500 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.4e-13 77.4 80 67.5
MBI14_g20107_MAGBIO Magnolia biondii HOM05D002160 ORTHO05D002012 5.4e-13 77.4 81 65.4
CiPaw.13G094600 Carya illinoinensis HOM05D002160 ORTHO05D002012 7.1e-13 77.0 82 65.9
Actinidia26465 Actinidia chinensis HOM05D002160 ORTHO05D002012 9.3e-13 76.6 80 67.5
CiPaw.14G068500 Carya illinoinensis HOM05D002160 ORTHO05D002012 9.3e-13 76.6 80 55.0
QL07p048273 Quercus lobata HOM05D002160 ORTHO05D002012 9.3e-13 76.6 79 67.1
CARHR211040 Cardamine hirsuta HOM05D002160 ORTHO05D002012 1.2e-12 76.3 78 62.8
Lj3g0021630 Lotus japonicus HOM05D002160 ORTHO05D002012 1.6e-12 75.9 80 63.8
Oeu036147.1 Olea europaea HOM05D002160 ORTHO05D002012 1.6e-12 75.9 81 64.2
THA.LOC104816271 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 1.6e-12 75.9 81 60.5
CANSAT35G0429 Cannabis sativa HOM05D002160 ORTHO05D002012 2.1e-12 75.5 81 65.4
Peaxi162Scf00946g00028 Petunia axillaris HOM05D002160 ORTHO05D002012 2.1e-12 75.5 79 64.6
Manes.08G079262 Manihot esculenta HOM05D002160 ORTHO05D002012 2.7e-12 75.1 81 60.5
Oeu007792.1 Olea europaea HOM05D002160 ORTHO05D002012 3.5e-12 74.7 80 57.5
PGR004G1599 Punica granatum HOM05D002160 ORTHO05D002012 3.5e-12 74.7 80 62.5
Rhsim05G0192600 Rhododendron simsii HOM05D002160 ORTHO05D002012 3.5e-12 74.7 80 66.2
THA.LOC104823261 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 3.5e-12 74.7 81 59.3
TAR633G1907 Trochodendron aralioides HOM05D002160 ORTHO05D002012 3.5e-12 74.7 80 65.0
CAN.G405.1 Capsicum annuum HOM05D002160 ORTHO05D002012 6.0e-12 73.9 79 68.4
CSS0038374 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 7.9e-12 73.6 80 63.8
Gorai.002G257700 Gossypium raimondii HOM05D002160 ORTHO05D002012 7.9e-12 73.6 80 62.5
Oeu011407.1 Olea europaea HOM05D002160 ORTHO05D002012 7.9e-12 73.6 83 61.4
TAR369G0024 Trochodendron aralioides HOM05D002160 ORTHO05D002012 1.0e-11 73.2 80 66.2
Gorai.007G376000 Gossypium raimondii HOM05D002160 ORTHO05D002012 1.3e-11 72.8 78 57.7
AT3G09390 Arabidopsis thaliana HOM05D002160 ORTHO05D002012 1.8e-11 72.4 81 60.5
Gohir.A01G222400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.8e-11 72.4 80 62.5
Manes.01G174400 Manihot esculenta HOM05D002160 ORTHO05D002012 1.8e-11 72.4 78 62.8
Manes.01G174200 Manihot esculenta HOM05D002160 ORTHO05D002012 2.3e-11 72.0 78 62.8
Potri.009G030800 Populus trichocarpa HOM05D002160 ORTHO05D002012 2.3e-11 72.0 81 65.4
SGA_v2.0_scaffold35G14233 Striga asiatica HOM05D000119 ORTHO05D000054 2.3e-11 72.0 81 58.0
DCAR_005972 Daucus carota HOM05D002160 ORTHO05D002012 3.0e-11 71.6 121 47.1
Gohir.A04G082400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.0e-11 71.6 80 62.5
Gohir.D04G121400 Gossypium hirsutum HOM05D002160 ORTHO05D002012 3.0e-11 71.6 80 62.5
Duzib093G1046 Durio zibethinus HOM05D002160 ORTHO05D002012 3.9e-11 71.2 80 62.5
CiPaw.10G145400 Carya illinoinensis HOM05D002160 ORTHO05D002012 5.1e-11 70.9 79 64.6
Gorai.012G103800 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.1e-11 70.9 80 62.5
Nitab4.5_0000317g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 5.1e-11 70.9 100 52.0
Sp6g40100 Schrenkiella parvula HOM05D002160 ORTHO05D002012 5.1e-11 70.9 81 49.4
AL3G20560 Arabidopsis lyrata HOM05D002160 ORTHO05D002012 6.7e-11 70.5 81 59.3
arahy.Tifrunner.gnm1.ann1.FFQQ4A Arachis hypogaea HOM05D002160 ORTHO05D002012 6.7e-11 70.5 81 60.5
Duzib106G1044 Durio zibethinus HOM05D002160 ORTHO05D002012 6.7e-11 70.5 80 62.5
Duzib128G1340 Durio zibethinus HOM05D002160 ORTHO05D002012 6.7e-11 70.5 80 61.2
Manes.07G091300 Manihot esculenta HOM05D002160 ORTHO05D002012 6.7e-11 70.5 78 61.5
arahy.Tifrunner.gnm1.ann1.EU8JQM Arachis hypogaea HOM05D002160 ORTHO05D002012 8.7e-11 70.1 81 60.5
CSS0042900 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D002012 8.7e-11 70.1 80 62.5
Carub.0006s0117 Capsella rubella HOM05D002160 ORTHO05D002012 8.7e-11 70.1 78 61.5
Gohir.D11G345700 Gossypium hirsutum HOM05D002160 ORTHO05D002012 8.7e-11 70.1 78 56.4
Gohir.D01G211900 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.5e-10 69.3 84 59.5
BcaC05g29516 Brassica carinata HOM05D002160 ORTHO05D002012 1.9e-10 68.9 81 59.3
Carub.0003s0850 Capsella rubella HOM05D002160 ORTHO05D002012 1.9e-10 68.9 81 58.0
CiPaw.03G262000 Carya illinoinensis HOM05D002160 ORTHO05D002012 1.9e-10 68.9 80 51.2
AUR62019082 Chenopodium quinoa HOM05D002160 ORTHO05D002012 1.9e-10 68.9 79 57.0
Potri.001G239650 Populus trichocarpa HOM05D002160 ORTHO05D002012 1.9e-10 68.9 80 62.5
SalBow3G1804 Salvia bowleyana HOM05D002160 ORTHO05D002012 1.9e-10 68.9 81 58.0
C05p58620 Brassica napus HOM05D002160 ORTHO05D002012 2.5e-10 68.6 81 59.3
Lsat_1_v5_gn_8_73001 Lactuca sativa HOM05D002160 ORTHO05D002012 2.5e-10 68.6 57 61.4
TWI79G1473 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 2.5e-10 68.6 80 62.5
Aa31LG3G1880 Aethionema arabicum HOM05D002160 ORTHO05D002012 3.3e-10 68.2 82 45.1
A05p39590 Brassica napus HOM05D002160 ORTHO05D002012 3.3e-10 68.2 81 59.3
BraA05t22740Z Brassica rapa HOM05D002160 ORTHO05D002012 3.3e-10 68.2 81 59.3
Thhalv10015167m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 3.3e-10 68.2 81 48.1
Manes.02G133200 Manihot esculenta HOM05D002160 ORTHO05D002012 3.3e-10 68.2 78 61.5
VMungo1383G3367 Vigna mungo HOM05D002160 ORTHO05D002012 3.3e-10 68.2 80 60.0
CAN.G111.42 Capsicum annuum HOM05D002160 ORTHO05D002012 4.3e-10 67.8 79 60.8
CARHR083780 Cardamine hirsuta HOM05D002160 ORTHO05D002012 4.3e-10 67.8 81 58.0
Manes.08G079200 Manihot esculenta HOM05D002160 ORTHO05D002012 4.3e-10 67.8 81 61.7
Solyc09g010800.5.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 4.3e-10 67.8 81 56.8
Sopen09g005530 Solanum pennellii HOM05D002160 ORTHO05D002012 4.3e-10 67.8 81 56.8
Thhalv10022195m.g Eutrema salsugineum HOM05D002160 ORTHO05D002012 5.6e-10 67.4 81 56.8
BcaC05g29670 Brassica carinata HOM05D002160 ORTHO05D002012 7.4e-10 67.0 81 59.3
BolC5t34512H Brassica oleracea HOM05D002160 ORTHO05D002012 7.4e-10 67.0 81 59.3
Glyma.07G132000 Glycine max HOM05D002160 ORTHO05D002012 7.4e-10 67.0 80 60.0
EL10Ac1g00022 Beta vulgaris HOM05D002160 ORTHO05D002012 9.6e-10 66.6 79 59.5
BcaC06g31984 Brassica carinata HOM05D002160 ORTHO05D002012 9.6e-10 66.6 81 46.9
A03p00650 Brassica napus HOM05D002160 ORTHO05D002012 9.6e-10 66.6 81 46.9
C03p00920 Brassica napus HOM05D002160 ORTHO05D002012 9.6e-10 66.6 81 46.9
BolC3t12655H Brassica oleracea HOM05D002160 ORTHO05D002012 9.6e-10 66.6 81 46.9
BraA03t09455Z Brassica rapa HOM05D002160 ORTHO05D002012 9.6e-10 66.6 81 46.9
Lsat_1_v5_gn_7_83340 Lactuca sativa HOM05D002160 ORTHO05D002012 9.6e-10 66.6 79 62.0
Nitab4.5_0006455g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 9.6e-10 66.6 80 56.2
Oeu049244.1 Olea europaea HOM05D002160 ORTHO05D002012 9.6e-10 66.6 83 53.0
Prupe.6G255100 Prunus persica HOM05D002160 ORTHO05D002012 9.6e-10 66.6 79 63.3
Solyc06g005465.1 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.3e-09 66.2 79 60.8
Sopen06g032540 Solanum pennellii HOM05D002160 ORTHO05D002012 1.3e-09 66.2 81 63.0
BcaNung02128 Brassica carinata HOM05D002160 ORTHO05D002012 1.6e-09 65.9 81 46.9
A10p33280 Brassica napus HOM05D002160 ORTHO05D002012 1.6e-09 65.9 81 46.9
C09p74190 Brassica napus HOM05D002160 ORTHO05D002012 1.6e-09 65.9 81 46.9
BolC9t60152H Brassica oleracea HOM05D002160 ORTHO05D002012 1.6e-09 65.9 81 46.9
PGSC0003DMG402008909 Solanum tuberosum HOM05D002160 ORTHO05D002012 2.1e-09 65.5 81 55.6
arahy.Tifrunner.gnm1.ann1.02J1VT Arachis hypogaea HOM05D002160 ORTHO05D002012 2.8e-09 65.1 80 58.8
arahy.Tifrunner.gnm1.ann1.8X9BUY Arachis hypogaea HOM05D002160 ORTHO05D002012 2.8e-09 65.1 80 58.8
Os12g0571100 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 2.8e-09 65.1 81 48.1
Aa31LG1G22420 Aethionema arabicum HOM05D002160 ORTHO05D002012 3.7e-09 64.7 81 56.8
A01p42320 Brassica napus HOM05D000351 ORTHO05D000250 3.7e-09 64.7 79 55.7
Manes.08G079293 Manihot esculenta HOM05D002160 ORTHO05D002012 4.8e-09 64.3 80 61.2
Sp3g07770 Schrenkiella parvula HOM05D002160 ORTHO05D002012 4.8e-09 64.3 81 56.8
Aqoxy2G02118 Aquilegia oxysepala HOM05D002160 ORTHO05D002012 6.2e-09 63.9 56 55.4
CAN.G326.9 Capsicum annuum HOM05D002160 ORTHO05D002012 6.2e-09 63.9 82 59.8
THA.LOC104827014 Tarenaya hassleriana HOM05D002160 ORTHO05D002012 6.2e-09 63.9 82 56.1
Haze_11621 Corylus avellana HOM05D002160 ORTHO05D002012 8.1e-09 63.5 79 62.0
Nitab4.5_0022803g0010 Nicotiana tabacum HOM05D002160 ORTHO05D002012 8.1e-09 63.5 79 63.3
Os12g0567800 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 8.1e-09 63.5 81 44.4
Sopen06g001440 Solanum pennellii HOM05D002160 ORTHO05D002012 8.1e-09 63.5 79 59.5
HPP92_006614 Vanilla planifolia HOM05D002160 ORTHO05D002012 8.1e-09 63.5 80 55.0
Eucgr.A01262 Eucalyptus grandis HOM05D002160 ORTHO05D002012 1.1e-08 63.2 82 57.3
Nitab4.5_0002557g0020 Nicotiana tabacum HOM05D002160 ORTHO05D002012 1.1e-08 63.2 79 60.8
TWI31G0095 Tripterygium wilfordii HOM05D002160 ORTHO05D002012 1.1e-08 63.2 74 50.0
BcaB01g06159 Brassica carinata HOM05D002160 ORTHO05D002012 1.4e-08 62.8 81 45.7
Medtr7g061018 Medicago truncatula HOM05D002160 ORTHO05D002012 1.4e-08 62.8 80 55.0
Os12g0570700 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 1.8e-08 62.4 81 53.1
SEGI_13620 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 2.4e-08 62.0 82 56.1
unitig_21.g21031 Utricularia gibba HOM05D002160 ORTHO05D002012 2.4e-08 62.0 80 51.2
Migut.L01944 Erythranthe guttata HOM05D002160 ORTHO05D002012 3.1e-08 61.6 81 55.6
GSVIVG01027808001 Vitis vinifera HOM05D002160 ORTHO05D002012 3.1e-08 61.6 83 57.8
Oeu051437.1 Olea europaea HOM05D002160 ORTHO05D002012 5.3e-08 60.8 67 55.2
Solyc06g076140.4 Solanum lycopersicum HOM05D002160 ORTHO05D002012 5.3e-08 60.8 79 62.0
TPR.G23304 Trifolium pratense HOM05D002160 ORTHO05D002012 5.3e-08 60.8 80 55.0
BcaB03g11601 Brassica carinata HOM05D002160 ORTHO05D002012 9.0e-08 60.1 82 50.0
Os12g0568200 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 9.0e-08 60.1 84 48.8
Cpa.g.sc228.19 Carica papaya HOM05D002160 ORTHO05D002012 1.2e-07 59.7 81 53.1
HanXRQChr08g0235781 Helianthus annuus HOM05D002160 ORTHO05D002012 1.2e-07 59.7 67 64.2
MD12G1141500 Malus domestica HOM05D002160 ORTHO05D002012 1.2e-07 59.7 79 57.0
PGSC0003DMG400030321 Solanum tuberosum HOM05D002160 ORTHO05D002012 1.2e-07 59.7 79 59.5
Atru.chr3.3900 Acer truncatum HOM05D002160 ORTHO05D002012 1.5e-07 59.3 81 56.8
Atru.chr3.3901 Acer truncatum HOM05D002160 ORTHO05D002012 1.5e-07 59.3 81 56.8
BcaC09g48025 Brassica carinata HOM05D002160 ORTHO05D002012 2.0e-07 58.9 80 55.0
Actinidia05312 Actinidia chinensis HOM05D002160 ORTHO05D002012 2.6e-07 58.5 80 57.5
Gohir.A11G326800 Gossypium hirsutum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 78 56.4
SEGI_28885 Sequoiadendron giganteum HOM05D002160 ORTHO05D002012 2.6e-07 58.5 81 53.1
Sopen04g025910 Solanum pennellii HOM05D002160 ORTHO05D002012 2.6e-07 58.5 79 58.2
Zm00001eb335880 Zea mays HOM05D002160 ORTHO05D002012 2.6e-07 58.5 56 55.4
Oeu051930.1 Olea europaea HOM05D002160 ORTHO05D002012 3.4e-07 58.2 83 43.4
Peaxi162Scf00774g00011 Petunia axillaris HOM05D002160 ORTHO05D002012 3.4e-07 58.2 79 55.7
BraA01t04299Z Brassica rapa HOM05D002269 ORTHO05D002421 4.5e-07 57.8 79 54.4
Os05g0111300 Oryza sativa ssp. japonica HOM05D024798 ORTHO05D002012 4.5e-07 57.8 76 59.2
Solyc04g058100.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 4.5e-07 57.8 79 58.2
Gohir.A13G224300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.8e-07 57.4 50 62.0
Gohir.D13G229100 Gossypium hirsutum HOM05D002160 ORTHO05D002012 5.8e-07 57.4 50 62.0
Gorai.013G260000 Gossypium raimondii HOM05D002160 ORTHO05D002012 5.8e-07 57.4 50 62.0
Os12g0568500 Oryza sativa ssp. japonica HOM05D002160 ORTHO05D002012 5.8e-07 57.4 86 44.2
Sed0021463 Sechium edule HOM05D002160 ORTHO05D002012 5.8e-07 57.4 83 53.0
ATR0559G129 Amborella trichopoda HOM05D002160 ORTHO05D002012 7.6e-07 57.0 78 53.8
MELO3C009260.2 Cucumis melo HOM05D002160 ORTHO05D002012 7.6e-07 57.0 81 56.8
CsaV3_3G034920 Cucumis sativus L. HOM05D002160 ORTHO05D002012 7.6e-07 57.0 81 56.8
Manes.07G090700 Manihot esculenta HOM05D002160 ORTHO05D002012 9.9e-07 56.6 45 80.0
C03p43610 Brassica napus HOM05D002160 ORTHO05D002012 1.3e-06 56.2 81 43.2
Gohir.D13G229300 Gossypium hirsutum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 50 60.0
Solyc04g058150.3 Solanum lycopersicum HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 58.2
Sopen04g026050 Solanum pennellii HOM05D002160 ORTHO05D002012 1.7e-06 55.8 79 58.2
BcaC01g04233 Brassica carinata HOM05D002160 ORTHO05D002012 2.9e-06 55.1 81 42.0
CSS0049920 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 3.8e-06 54.7 79 62.0
A03p35970 Brassica napus HOM05D002160 ORTHO05D002012 6.4e-06 53.9 81 42.0
CSS0041307 Camellia sinensis var. sinensis HOM05D002160 ORTHO05D024696 6.4e-06 53.9 79 60.8
Cpa.g.sc81.153 Carica papaya HOM05D002160 ORTHO05D002012 6.4e-06 53.9 75 42.7
Oeu053915.1 Olea europaea HOM05D022828 ORTHO05D002012 6.4e-06 53.9 72 58.3
Rhsim13G0082700 Rhododendron simsii HOM05D002160 ORTHO05D002012 8.4e-06 53.5 67 62.7
SalBow3G1981 Salvia bowleyana HOM05D002160 ORTHO05D002012 8.4e-06 53.5 76 51.3


User provided reference genes

Program Settings