Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001342 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.1e-278 962.6 453 100.0
Rhsim10G0101200 Rhododendron simsii HOM05D004306 ORTHO05D005055 2.9e-260 901.4 451 92.7
GSVIVG01000140001 Vitis vinifera HOM05D004306 ORTHO05D005055 2.0e-253 878.6 453 90.5
Lj4A160T62 Lonicera japonica HOM05D004306 ORTHO05D005055 2.1e-250 868.6 453 88.7
Cfa004112 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.6e-250 867.8 448 89.5
Actinidia11991 Actinidia chinensis HOM05D004306 ORTHO05D005055 6.1e-250 867.1 449 89.8
PGR102G2907 Punica granatum HOM05D004306 ORTHO05D005055 6.1e-250 867.1 453 88.1
TAR628G0028 Trochodendron aralioides HOM05D004306 ORTHO05D005055 3.9e-249 864.4 451 89.4
Lsat_1_v5_gn_2_82860 Lactuca sativa HOM05D004306 ORTHO05D005055 9.7e-248 859.8 451 88.2
Peaxi162Scf00264g00117 Petunia axillaris HOM05D004306 ORTHO05D005055 1.1e-246 856.3 450 87.1
Dinv26913 Davidia involucrata HOM05D004306 ORTHO05D005055 1.4e-246 855.9 452 88.7
FAN23G0931 Fragaria x ananassa HOM05D004306 ORTHO05D005055 1.4e-246 855.9 448 87.7
Oeu014230.2 Olea europaea HOM05D004306 ORTHO05D005055 1.8e-246 855.5 451 87.1
Gorai.007G222100 Gossypium raimondii HOM05D004306 ORTHO05D005055 3.1e-246 854.7 453 87.2
FAN28G1176 Fragaria x ananassa HOM05D004306 ORTHO05D005055 4.1e-246 854.4 453 86.8
Glyma.17G161900 Glycine max HOM05D004306 ORTHO05D005055 5.3e-246 854.0 451 87.6
FAN26G3311 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.9e-246 853.6 448 87.5
Nn1g04599 Nelumbo nucifera HOM05D004306 ORTHO05D005055 1.5e-245 852.4 448 87.9
Prupe.6G223000 Prunus persica HOM05D004306 ORTHO05D005055 1.5e-245 852.4 448 88.2
Atru.chr3.158 Acer truncatum HOM05D004306 ORTHO05D005055 3.4e-245 851.3 446 89.9
Atru.chr3.187 Acer truncatum HOM05D004306 ORTHO05D005055 3.4e-245 851.3 446 89.9
GSVIVG01000137001 Vitis vinifera HOM05D004306 ORTHO05D005055 3.4e-245 851.3 453 88.7
GSVIVG01000135001 Vitis vinifera HOM05D004306 ORTHO05D005055 4.5e-245 850.9 453 88.3
AUR62003989 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.7e-245 850.1 451 86.5
ClCG01G017440 Citrullus lanatus HOM05D004306 ORTHO05D005055 7.7e-245 850.1 451 87.4
Manes.12G110500 Manihot esculenta HOM05D004306 ORTHO05D005055 7.7e-245 850.1 448 87.7
Nitab4.5_0000651g0100 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.2e-244 848.6 448 86.6
PGSC0003DMG400024965 Solanum tuberosum HOM05D004306 ORTHO05D005055 3.8e-244 847.8 448 86.6
FAN19G2263 Fragaria x ananassa HOM05D004306 ORTHO05D005055 6.5e-244 847.0 458 85.8
Oeu040626.2 Olea europaea HOM05D004306 ORTHO05D005055 8.5e-244 846.7 451 87.1
vmacro05397 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.1e-243 846.3 453 88.7
Duzib264G0002 Durio zibethinus HOM05D004306 ORTHO05D005055 3.2e-243 844.7 447 87.7
Sed0025668 Sechium edule HOM05D004306 ORTHO05D005055 3.2e-243 844.7 451 86.7
Cpa.g.sc6.39 Carica papaya HOM05D004306 ORTHO05D005055 5.5e-243 844.0 442 88.5
Thecc.01G070200 Theobroma cacao HOM05D004306 ORTHO05D005055 5.5e-243 844.0 453 87.2
CiPaw.02G003700 Carya illinoinensis HOM05D004306 ORTHO05D005055 7.2e-243 843.6 448 88.6
Solyc02g092530.4 Solanum lycopersicum HOM05D004306 ORTHO05D005055 7.2e-243 843.6 448 86.4
Ciclev10025794m.g Citrus clementina HOM05D004306 ORTHO05D005055 9.4e-243 843.2 453 87.0
MSTRG.15357 Avicennia marina HOM05D004306 ORTHO05D005055 3.0e-241 838.2 451 86.0
Gohir.A11G216400 Gossypium hirsutum HOM05D004306 ORTHO05D005055 3.9e-241 837.8 453 86.1
Duzib187G0102 Durio zibethinus HOM05D004306 ORTHO05D005055 5.2e-241 837.4 453 86.8
Cc07_g06920 Coffea canephora HOM05D004306 ORTHO05D005055 1.1e-240 836.3 453 85.4
Gohir.D11G207000 Gossypium hirsutum HOM05D004306 ORTHO05D005055 1.1e-240 836.3 453 86.1
Phvul.003G236000 Phaseolus vulgaris HOM05D004306 ORTHO05D005055 4.4e-240 834.3 451 85.6
Lj4g0006645 Lotus japonicus HOM05D004306 ORTHO05D005055 5.7e-240 833.9 451 85.6
SGA_v2.0_scaffold21G09395 Striga asiatica HOM05D004306 ORTHO05D005055 5.7e-240 833.9 453 84.3
arahy.Tifrunner.gnm1.ann1.GV60EB Arachis hypogaea HOM05D004306 ORTHO05D005055 7.4e-240 833.6 447 85.9
Haze_15301 Corylus avellana HOM05D004306 ORTHO05D005055 2.8e-239 831.6 425 90.4
MD15G1294800 Malus domestica HOM05D004306 ORTHO05D005055 3.7e-239 831.2 443 86.7
TWI09G0703 Tripterygium wilfordii HOM05D004306 ORTHO05D005055 6.3e-239 830.5 451 85.8
Carub.0007s0271 Capsella rubella HOM05D004306 ORTHO05D005055 8.2e-239 830.1 451 84.3
Aa31LG6G14430 Aethionema arabicum HOM05D004306 ORTHO05D005055 1.1e-238 829.7 447 85.7
SalBow5G1134 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.1e-238 829.7 451 84.9
SalBow5G1710 Salvia bowleyana HOM05D004306 ORTHO05D005055 1.8e-238 828.9 451 84.9
CANSAT01G0675 Cannabis sativa HOM05D004306 ORTHO05D005055 3.1e-238 828.2 447 85.9
HanXRQChr14g0449471 Helianthus annuus HOM05D004306 ORTHO05D005055 3.1e-238 828.2 451 86.3
VMungo0251G0785 Vigna mungo HOM05D004306 ORTHO05D005055 3.1e-238 828.2 451 84.7
BolC1t00152H Brassica oleracea HOM05D004306 ORTHO05D005055 4.1e-238 827.8 451 83.8
CsaV3_6G043980 Cucumis sativus L. HOM05D004306 ORTHO05D005055 4.1e-238 827.8 443 86.2
C01p01570 Brassica napus HOM05D004306 ORTHO05D005055 5.3e-238 827.4 451 84.0
ECA238G2426 Erigeron canadensis HOM05D004306 ORTHO05D005055 5.3e-238 827.4 451 85.1
TPR.G23896 Trifolium pratense HOM05D004306 ORTHO05D005055 5.3e-238 827.4 448 85.0
AUR62040257 Chenopodium quinoa HOM05D004306 ORTHO05D005055 7.0e-238 827.0 445 85.8
A01p01390 Brassica napus HOM05D004306 ORTHO05D005055 1.2e-237 826.2 451 84.0
BraA01t00135Z Brassica rapa HOM05D004306 ORTHO05D005055 1.2e-237 826.2 451 84.0
AL7G13200 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 2.0e-237 825.5 451 83.8
CARHR245950 Cardamine hirsuta HOM05D004306 ORTHO05D005055 2.0e-237 825.5 451 84.3
Lalb_Chr16g0389191 Lupinus albus HOM05D004306 ORTHO05D005055 2.0e-237 825.5 451 85.1
Medtr4g095660 Medicago truncatula HOM05D004306 ORTHO05D005055 2.6e-237 825.1 447 84.6
AL7G13210 Arabidopsis lyrata HOM05D004306 ORTHO05D005055 3.5e-237 824.7 451 84.3
Thhalv10025178m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 3.5e-237 824.7 448 84.6
Sopen02g037110 Solanum pennellii HOM05D004306 ORTHO05D005055 3.5e-237 824.7 440 85.7
EL10Ac6g15639 Beta vulgaris HOM05D004306 ORTHO05D005055 7.7e-237 823.5 451 84.5
PSO541G4466 Papaver somniferum HOM05D004306 ORTHO05D005055 1.0e-236 823.2 443 85.1
CDE04G2054 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 1.3e-236 822.8 451 85.4
FvH4_1g17390 Fragaria vesca HOM05D004306 ORTHO05D005055 1.3e-236 822.8 442 85.7
CAN.G1075.22 Capsicum annuum HOM05D004306 ORTHO05D005055 2.2e-236 822.0 443 85.8
Thhalv10025180m.g Eutrema salsugineum HOM05D004306 ORTHO05D005055 2.2e-236 822.0 448 85.0
Potri.005G145400 Populus trichocarpa HOM05D004306 ORTHO05D005055 6.5e-236 820.5 442 86.7
Migut.L00204 Erythranthe guttata HOM05D004306 ORTHO05D005055 8.5e-236 820.1 448 85.9
Aqoxy6G02701 Aquilegia oxysepala HOM05D004306 ORTHO05D005055 1.5e-235 819.3 448 84.2
AT4G37560 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 1.5e-235 819.3 447 84.1
CARHR245960 Cardamine hirsuta HOM05D004306 ORTHO05D005055 1.5e-235 819.3 451 83.1
Ca_13922_v3 Cicer arietinum L. HOM05D004306 ORTHO05D005055 1.5e-235 819.3 445 83.8
Sp7g35240 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.9e-235 818.9 451 83.4
THA.LOC104819873 Tarenaya hassleriana HOM05D004306 ORTHO05D005055 4.2e-235 817.8 482 79.9
MBI16_g09132_MAGBIO Magnolia biondii HOM05D004306 ORTHO05D005055 9.4e-235 816.6 447 84.6
Nitab4.5_0006069g0040 Nicotiana tabacum HOM05D004306 ORTHO05D005055 1.2e-234 816.2 433 86.1
Eucgr.H02295 Eucalyptus grandis HOM05D004306 ORTHO05D005055 2.7e-234 815.1 453 84.3
Sp7g35230 Schrenkiella parvula HOM05D004306 ORTHO05D005055 1.4e-233 812.8 448 83.3
Sabra05G0116200 Salix brachista HOM05D004306 ORTHO05D005055 2.3e-233 812.0 494 78.1
AT4G37550 Arabidopsis thaliana HOM05D004306 ORTHO05D005055 3.0e-233 811.6 451 82.9
Os01g0764900 Oryza sativa ssp. japonica HOM05D004306 ORTHO05D005055 2.6e-232 808.5 451 82.0
Hund13938 Selenicereus undatus HOM05D004306 ORTHO05D005055 2.6e-232 808.5 469 80.8
BraA01t00136Z Brassica rapa HOM05D004306 ORTHO05D005055 4.1e-230 801.2 452 82.1
A01p01400 Brassica napus HOM05D004306 ORTHO05D005055 1.6e-229 799.3 452 81.6
Zm00001eb370290 Zea mays HOM05D004306 ORTHO05D005055 1.6e-229 799.3 451 80.5
BolC1t00153H Brassica oleracea HOM05D004306 ORTHO05D005055 7.7e-229 797.0 452 81.2
BcaNung05904 Brassica carinata HOM05D004306 ORTHO05D005055 1.0e-228 796.6 452 81.2
C01p01580 Brassica napus HOM05D004306 ORTHO05D005055 1.0e-228 796.6 452 81.2
BcaNung05906 Brassica carinata HOM05D004306 ORTHO05D005055 3.2e-227 791.6 451 81.6
Lj4g0023143 Lotus japonicus HOM05D004306 ORTHO05D005055 5.5e-227 790.8 445 81.8
Hma1.2p1_0730F.1_g209845 Hydrangea macrophylla HOM05D004306 ORTHO05D005055 7.2e-227 790.4 442 84.4
RcHm_v2.0_Chr2g0107581 Rosa chinensis HOM05D004306 ORTHO05D005055 7.2e-227 790.4 443 83.5
CSS0047878 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 4.7e-226 787.7 448 85.5
MELO3C007621.2 Cucumis melo HOM05D004306 ORTHO05D005055 1.3e-223 779.6 412 87.4
DCAR_025786 Daucus carota HOM05D004306 ORTHO05D005055 1.1e-222 776.5 451 80.5
unitig_748.g8394 Utricularia gibba HOM05D004306 ORTHO05D005055 1.4e-222 776.2 448 79.7
BcaNung05905 Brassica carinata HOM05D004306 ORTHO05D005055 2.1e-218 762.3 451 78.9
SMO141G0231 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.3e-209 732.3 447 76.1
Cre16.g691750 Chlamydomonas reinhardtii HOM05D004306 ORTHO05D005055 4.0e-209 731.5 449 76.4
Psat0ss839g0200 Pisum sativum HOM05D004306 ORTHO05D005055 1.1e-206 723.4 375 88.5
Pp3c3_32950 Physcomitrium patens HOM05D004306 ORTHO05D005055 2.3e-204 715.7 448 74.6
Ah.02g125510 Amaranthus hybridus HOM05D004306 ORTHO05D005055 3.9e-204 714.9 452 75.4
CSS0039286 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 1.6e-202 709.5 448 78.1
HPP92_014148 Vanilla planifolia HOM05D004306 ORTHO05D005055 4.0e-201 704.9 388 83.8
CSS0041574 Camellia sinensis var. sinensis HOM05D004306 ORTHO05D005055 5.8e-200 701.0 457 77.5
Cfa004110 Carpinus fangiana HOM05D004306 ORTHO05D005055 2.2e-199 699.1 459 74.7
ATR0019G017 Amborella trichopoda HOM05D004306 ORTHO05D005055 2.4e-198 695.7 377 84.4
Sc16g0000120 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.6e-176 622.5 332 87.7
HPP92_014166 Vanilla planifolia HOM05D004306 ORTHO05D005055 5.4e-166 588.2 434 68.4
COL.COLO4_11552 Corchorus olitorius HOM05D004306 ORTHO05D005055 4.8e-162 575.1 453 64.2
arahy.Tifrunner.gnm1.ann1.HR4B5C Arachis hypogaea HOM05D004306 ORTHO05D005055 1.9e-158 563.1 294 88.4
Zm00001eb152190 Zea mays HOM05D004306 ORTHO05D005055 2.7e-157 559.3 316 79.1
Sc16g0000140 Simmondsia chinensis HOM05D004306 ORTHO05D005055 2.4e-153 546.2 300 84.7
DCAR_025787 Daucus carota HOM05D004306 ORTHO05D005055 1.4e-145 520.4 288 82.6
Oeu013288.2 Olea europaea HOM05D004306 ORTHO05D005055 6.9e-137 491.5 457 58.4
SMO170G0023 Selaginella moellendorffii HOM05D004306 ORTHO05D005055 2.2e-130 469.9 379 60.9
SEGI_32720 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 6.1e-125 451.8 295 70.5
ATR0019G021 Amborella trichopoda HOM05D004306 ORTHO05D005055 3.2e-110 402.9 280 69.3
MD00G1015700 Malus domestica HOM05D004306 ORTHO05D005055 2.2e-90 337.0 194 78.4
DCAR_000330 Daucus carota HOM05D004306 ORTHO05D005055 3.2e-81 306.6 160 86.2
Cfa025028 Carpinus fangiana HOM05D004306 ORTHO05D005055 4.9e-74 282.7 270 51.9
arahy.Tifrunner.gnm1.ann1.ZW9ABU Arachis hypogaea HOM05D004306 ORTHO05D005055 7.8e-72 275.4 153 80.4
Sc16g0000130 Simmondsia chinensis HOM05D004306 ORTHO05D005055 1.8e-68 264.2 153 73.9
EL10Ac1g01850 Beta vulgaris HOM05D004306 ORTHO05D005055 1.5e-67 261.2 147 81.0
SEGI_23023 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 2.0e-67 260.8 145 79.3
MD00G1015600 Malus domestica HOM05D004306 ORTHO05D005055 7.6e-67 258.8 193 67.4
EL10Ac5g12500 Beta vulgaris HOM05D004306 ORTHO05D005055 4.9e-66 256.1 140 82.9
SEGI_13173 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 9.2e-65 251.9 156 72.4
SEGI_27901 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 4.6e-64 249.6 146 78.8
RcHm_v2.0_Chr2g0107621 Rosa chinensis HOM05D004306 ORTHO05D005055 3.6e-53 213.4 138 73.2
COL.COLO4_11551 Corchorus olitorius HOM05D004306 ORTHO05D005055 3.1e-52 210.3 135 74.1
TPR.G23871 Trifolium pratense HOM05D004306 ORTHO05D005055 3.8e-50 203.4 108 88.0
CDE07G1667 Ceratophyllum demersum HOM05D004306 ORTHO05D005055 4.0e-44 183.3 117 72.6
EL10Ac4g09102 Beta vulgaris HOM05D004306 ORTHO05D005055 6.7e-39 166.0 132 60.6
AUR62003988 Chenopodium quinoa HOM05D004306 ORTHO05D005055 3.6e-24 117.1 66 81.8
ATR0515G001 Amborella trichopoda HOM05D004306 ORTHO05D005055 1.4e-23 115.2 55 92.7
Cfa004111 Carpinus fangiana HOM05D004306 ORTHO05D005055 3.9e-23 113.6 78 71.8
vmacro05396 Vaccinium macrocarpon HOM05D004306 ORTHO05D005055 1.7e-21 108.2 74 70.3
SGA_v2.0_scaffold21G09394 Striga asiatica HOM05D004306 ORTHO05D005055 5.3e-20 103.2 66 69.7
FAN28G1106 Fragaria x ananassa HOM05D004306 ORTHO05D005055 2.0e-19 101.3 68 70.6
Lj4C160G10 Lonicera japonica HOM05D004306 ORTHO05D005055 1.7e-18 98.2 72 66.7
Psat5g012000 Pisum sativum HOM05D004306 ORTHO05D005055 2.5e-17 94.4 83 51.8
Dinv30076 Davidia involucrata HOM05D004306 ORTHO05D005055 5.5e-17 93.2 80 57.5
SEGI_03818 Sequoiadendron giganteum HOM05D004306 ORTHO05D005055 3.9e-15 87.0 67 59.7
Cc07_g06910 Coffea canephora HOM05D004306 ORTHO05D005055 1.7e-13 81.6 49 71.4
Nitab4.5_0000032g0200 Nicotiana tabacum HOM05D004306 ORTHO05D005055 2.8e-13 80.9 44 77.3
EL10Ac4g09101 Beta vulgaris HOM05D004306 ORTHO05D005055 1.8e-12 78.2 41 80.5
Eucgr.H02294 Eucalyptus grandis HOM05D004306 ORTHO05D005055 1.8e-12 78.2 65 56.9
PRCOL_00001243 Prasinoderma coloniale HOM05D004306 ORTHO05D005055 2.0e-11 74.7 425 24.7
Thecc.01G069900 Theobroma cacao HOM05D004306 ORTHO05D005055 1.9e-09 68.2 39 76.9


User provided reference genes

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