Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001340 Camellia sinensis var. sinensis HOM05D020552 ORTHO05D001151 1.4e-54 216.1 109 100.0
Rhsim06G0159100 Rhododendron simsii HOM05D000008 ORTHO05D001151 6.1e-15 84.3 69 68.1
Dinv02742 Davidia involucrata HOM05D000008 ORTHO05D001151 1.4e-14 83.2 69 68.1
Dinv39692 Davidia involucrata HOM05D020552 ORTHO05D001151 4.0e-14 81.6 47 91.5
Haze_12888 Corylus avellana HOM05D000008 ORTHO05D001151 6.8e-14 80.9 69 65.2
Potri.017G037000 Populus trichocarpa HOM05D000008 ORTHO05D001151 2.6e-13 79.0 69 66.7
Prupe.3G219200 Prunus persica HOM05D000008 ORTHO05D001151 2.6e-13 79.0 69 68.1
vmacro12223 Vaccinium macrocarpon HOM05D000008 ORTHO05D001151 3.4e-13 78.6 70 65.7
FAN05G2626 Fragaria x ananassa HOM05D000008 ORTHO05D001151 5.8e-13 77.8 69 66.7
FAN09G0221 Fragaria x ananassa HOM05D000008 ORTHO05D001151 5.8e-13 77.8 69 66.7
RcHm_v2.0_Chr2g0159921 Rosa chinensis HOM05D000008 ORTHO05D001151 5.8e-13 77.8 69 66.7
Actinidia39285 Actinidia chinensis HOM05D000008 ORTHO05D001151 9.8e-13 77.0 69 69.6
Manes.13G072300 Manihot esculenta HOM05D000008 ORTHO05D001151 9.8e-13 77.0 69 63.8
Potri.007G122800 Populus trichocarpa HOM05D000008 ORTHO05D001151 1.3e-12 76.6 69 65.2
FAN14G3065 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.7e-12 76.3 69 65.2
FAN14G3112 Fragaria x ananassa HOM05D000008 ORTHO05D001151 1.7e-12 76.3 69 65.2
QL08p033621 Quercus lobata HOM05D000008 ORTHO05D001151 1.7e-12 76.3 69 63.8
Hma1.2p1_0613F.1_g189090 Hydrangea macrophylla HOM05D000008 ORTHO05D001151 1.1e-11 73.6 68 61.8
PGR004G0365 Punica granatum HOM05D000008 ORTHO05D001151 3.2e-11 72.0 69 62.3
Sabra07G0099400 Salix brachista HOM05D000008 ORTHO05D001151 4.1e-11 71.6 69 62.3
CiPaw.03G162100 Carya illinoinensis HOM05D000008 ORTHO05D001151 5.4e-11 71.2 69 63.8
Eucgr.A01720 Eucalyptus grandis HOM05D000008 ORTHO05D001151 5.4e-11 71.2 69 62.3
Duzib268G0615 Durio zibethinus HOM05D000008 ORTHO05D001151 7.0e-11 70.9 69 65.2
Nn1g03626 Nelumbo nucifera HOM05D000008 ORTHO05D001151 9.2e-11 70.5 69 62.3
Actinidia30515 Actinidia chinensis HOM05D000008 ORTHO05D001151 1.2e-10 70.1 71 70.4
COL.COLO4_27684 Corchorus olitorius HOM05D000008 ORTHO05D001151 1.6e-10 69.7 71 63.4
GSVIVG01030609001 Vitis vinifera HOM05D000008 ORTHO05D001151 2.0e-10 69.3 69 63.8
Dinv20020 Davidia involucrata HOM05D000008 ORTHO05D001151 6.0e-10 67.8 69 58.0
Duzib251G0940 Durio zibethinus HOM05D000008 ORTHO05D001151 6.0e-10 67.8 69 60.9
Atru.chr6.3160 Acer truncatum HOM05D000008 ORTHO05D001151 1.0e-09 67.0 73 60.3
Thecc.02G312700 Theobroma cacao HOM05D000008 ORTHO05D001151 1.0e-09 67.0 69 62.3
Thecc.07G051100 Theobroma cacao HOM05D000008 ORTHO05D001151 1.7e-09 66.2 69 53.6
Potri.011G026300 Populus trichocarpa HOM05D000008 ORTHO05D001151 3.9e-09 65.1 69 58.0
TAR627G1133 Trochodendron aralioides HOM05D020552 ORTHO05D000037 3.9e-09 65.1 47 83.0
Duzib235G0636 Durio zibethinus HOM05D000008 ORTHO05D001151 6.6e-09 64.3 68 58.8
Dinv17830 Davidia involucrata HOM05D000008 ORTHO05D001151 1.5e-08 63.2 69 58.0
Hma1.2p1_2714F.1_g327420 Hydrangea macrophylla HOM05D000008 ORTHO05D001151 1.5e-08 63.2 70 55.7
MBI02_g21863_MAGBIO Magnolia biondii HOM05D000008 ORTHO05D001151 1.9e-08 62.8 69 58.0
Sabra11G0016900 Salix brachista HOM05D000008 ORTHO05D001151 1.9e-08 62.8 69 56.5
vmacro11760 Vaccinium macrocarpon HOM05D000008 ORTHO05D001151 1.9e-08 62.8 69 59.4
CSS0039428 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D001151 2.5e-08 62.4 69 55.1
GSVIVG01012633001 Vitis vinifera HOM05D000008 ORTHO05D001151 3.3e-08 62.0 69 52.2
Actinidia09923 Actinidia chinensis HOM05D000008 ORTHO05D001151 5.6e-08 61.2 69 59.4
Sabra04G0011800 Salix brachista HOM05D000008 ORTHO05D001151 7.3e-08 60.8 95 43.2
CSS0033018 Camellia sinensis var. sinensis HOM05D000008 ORTHO05D001151 1.2e-07 60.1 70 55.7
Haze_09624 Corylus avellana HOM05D000008 ORTHO05D001151 1.2e-07 60.1 70 52.9
Rhsim02G0111800 Rhododendron simsii HOM05D000008 ORTHO05D001151 1.6e-07 59.7 78 47.4
CiPaw.11G184800 Carya illinoinensis HOM05D000008 ORTHO05D001151 2.1e-07 59.3 73 47.9
Duzib160G0189 Durio zibethinus HOM05D000008 ORTHO05D001151 2.1e-07 59.3 68 54.4
Gohir.A01G075400 Gossypium hirsutum HOM05D000008 ORTHO05D001151 2.8e-07 58.9 71 49.3
QL93p0073_0483 Quercus lobata HOM05D000008 ORTHO05D001151 2.8e-07 58.9 69 50.7
FvH4_6g43450 Fragaria vesca HOM05D000008 ORTHO05D001151 3.6e-07 58.5 52 63.5
Gohir.A12G156200 Gossypium hirsutum HOM05D000008 ORTHO05D001151 3.6e-07 58.5 69 55.1
TPR.G19035 Trifolium pratense HOM05D000008 ORTHO05D001151 3.6e-07 58.5 69 53.6
FAN02G3670 Fragaria x ananassa HOM05D000008 ORTHO05D001151 4.7e-07 58.2 69 53.6
QL05p074951 Quercus lobata HOM05D000008 ORTHO05D001151 4.7e-07 58.2 69 50.7
TAR626G1685 Trochodendron aralioides HOM05D000008 ORTHO05D001151 4.7e-07 58.2 69 56.5
Nn1g07130 Nelumbo nucifera HOM05D000008 ORTHO05D001151 6.2e-07 57.8 69 55.1
Cfa014430 Carpinus fangiana HOM05D001264 ORTHO05D001167 8.0e-07 57.4 51 62.7
Ciclev10017220m.g Citrus clementina HOM05D000008 ORTHO05D001151 8.0e-07 57.4 71 54.9
Prupe.4G025800 Prunus persica HOM05D000008 ORTHO05D001151 8.0e-07 57.4 48 66.7
Thecc.06G214500 Theobroma cacao HOM05D000008 ORTHO05D001151 8.0e-07 57.4 68 52.9
Gohir.D01G062700 Gossypium hirsutum HOM05D000008 ORTHO05D001151 1.1e-06 57.0 71 50.7
Gorai.002G083400 Gossypium raimondii HOM05D000008 ORTHO05D001151 1.1e-06 57.0 71 50.7
Sabra17G0024200 Salix brachista HOM05D000008 ORTHO05D001151 1.1e-06 57.0 69 52.2
CiPaw.12G126900 Carya illinoinensis HOM05D000008 ORTHO05D001151 1.4e-06 56.6 69 47.8
CiPaw.09G087400 Carya illinoinensis HOM05D000008 ORTHO05D001151 1.8e-06 56.2 78 47.4
Haze_06743 Corylus avellana HOM05D000008 ORTHO05D001151 2.3e-06 55.8 78 47.4
Gohir.D12G159301 Gossypium hirsutum HOM05D000008 ORTHO05D001151 2.3e-06 55.8 69 53.6
Gorai.008G172400 Gossypium raimondii HOM05D000008 ORTHO05D001151 2.3e-06 55.8 69 53.6
PGR042G1777 Punica granatum HOM05D000008 ORTHO05D001151 2.3e-06 55.8 66 54.5
Gohir.A06G208000 Gossypium hirsutum HOM05D000008 ORTHO05D001151 3.1e-06 55.5 72 48.6
Lj3g0022338 Lotus japonicus HOM05D000008 ORTHO05D001151 3.1e-06 55.5 69 55.1
Potri.004G021300 Populus trichocarpa HOM05D000008 ORTHO05D001151 3.1e-06 55.5 69 52.2
Nn1g07041 Nelumbo nucifera HOM05D000008 ORTHO05D001151 4.0e-06 55.1 69 53.6
Psat0s785g0040 Pisum sativum HOM05D000008 ORTHO05D001151 5.2e-06 54.7 69 47.8
TWI38G1835 Tripterygium wilfordii HOM05D000008 ORTHO05D001151 5.2e-06 54.7 69 46.4
Gohir.D06G213100 Gossypium hirsutum HOM05D000008 ORTHO05D001151 6.8e-06 54.3 72 47.2
Gorai.010G253000 Gossypium raimondii HOM05D000008 ORTHO05D001151 6.8e-06 54.3 72 47.2
Manes.17G035600 Manihot esculenta HOM05D000008 ORTHO05D001151 6.8e-06 54.3 73 45.2


User provided reference genes

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