Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001334 Camellia sinensis var. sinensis HOM05D005703 ORTHO05D006643 6.8e-185 650.6 345 100.0
Actinidia02238 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.8e-132 476.5 296 84.1
Actinidia27862 Actinidia chinensis HOM05D005703 ORTHO05D006643 1.1e-131 473.8 292 84.2
Hma1.2p1_0066F.1_g035910 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 2.4e-129 466.1 277 86.3
Potri.004G160800 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.3e-129 464.9 277 87.0
QL11p045612 Quercus lobata HOM05D005703 ORTHO05D006643 6.9e-129 464.5 277 87.7
CiPaw.06G130900 Carya illinoinensis HOM05D005703 ORTHO05D006643 2.0e-128 463.0 277 87.4
GSVIVG01024205001 Vitis vinifera HOM05D005703 ORTHO05D006643 2.6e-128 462.6 274 87.6
Nn6g32200 Nelumbo nucifera HOM05D005703 ORTHO05D006643 2.2e-127 459.5 278 84.9
Cpa.g.sc150.43 Carica papaya HOM05D005703 ORTHO05D006643 2.9e-127 459.1 285 84.2
Manes.11G087800 Manihot esculenta HOM05D005703 ORTHO05D006643 7.2e-126 454.5 312 78.2
Atru.chr5.3109 Acer truncatum HOM05D005703 ORTHO05D006643 1.2e-125 453.8 292 80.5
RcHm_v2.0_Chr6g0266981 Rosa chinensis HOM05D005703 ORTHO05D006643 2.7e-125 452.6 278 83.8
MD10G1066100 Malus domestica HOM05D005703 ORTHO05D006643 3.6e-125 452.2 276 84.4
Sabra04G0107600 Salix brachista HOM05D005703 ORTHO05D006643 4.6e-125 451.8 280 84.3
Thecc.02G078100 Theobroma cacao HOM05D005703 ORTHO05D006643 2.3e-124 449.5 278 83.1
TWI31G0330 Tripterygium wilfordii HOM05D005703 ORTHO05D006643 2.3e-124 449.5 278 84.9
FvH4_2g10050 Fragaria vesca HOM05D005703 ORTHO05D006643 5.1e-124 448.4 278 83.1
MELO3C002791.2 Cucumis melo HOM05D005703 ORTHO05D006643 6.7e-124 448.0 289 80.6
Gohir.D12G030600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.5e-123 446.8 276 81.5
Rhsim05G0069500 Rhododendron simsii HOM05D005703 ORTHO05D006643 2.5e-123 446.0 285 80.0
CsaV3_7G000370 Cucumis sativus L. HOM05D005703 ORTHO05D006643 3.3e-123 445.7 314 77.1
Gorai.008G031500 Gossypium raimondii HOM05D005703 ORTHO05D006643 4.3e-123 445.3 276 81.2
Aqoxy5G01507 Aquilegia oxysepala HOM05D005703 ORTHO05D006643 1.6e-122 443.4 278 82.4
Eucgr.D00178 Eucalyptus grandis HOM05D005703 ORTHO05D006643 2.2e-122 443.0 275 82.2
Sopen01g052320 Solanum pennellii HOM05D005703 ORTHO05D006643 1.1e-121 440.7 275 82.9
MSTRG.20056 Avicennia marina HOM05D005703 ORTHO05D006643 2.0e-120 436.4 277 80.1
Solyc01g110160.4 Solanum lycopersicum HOM05D005703 ORTHO05D006643 2.0e-120 436.4 308 75.3
VMungo1127G0812 Vigna mungo HOM05D005703 ORTHO05D006643 2.9e-119 432.6 278 77.7
Lj3g0017018 Lotus japonicus HOM05D005703 ORTHO05D006643 3.8e-119 432.2 284 77.1
COL.COLO4_26014 Corchorus olitorius HOM05D005703 ORTHO05D006643 5.0e-119 431.8 281 79.4
PGSC0003DMG400030971 Solanum tuberosum HOM05D005703 ORTHO05D006643 1.1e-118 430.6 285 79.6
Peaxi162Scf00016g00231 Petunia axillaris HOM05D005703 ORTHO05D006643 2.5e-118 429.5 298 76.8
PSO170G4951 Papaver somniferum HOM05D005703 ORTHO05D006643 3.2e-118 429.1 311 73.0
Glyma.11G112900 Glycine max HOM05D005703 ORTHO05D006643 4.2e-118 428.7 277 76.9
Sc14g0002020 Simmondsia chinensis HOM05D005703 ORTHO05D006643 9.4e-118 427.6 275 79.3
TPR.G16235 Trifolium pratense HOM05D005703 ORTHO05D006643 9.4e-118 427.6 288 75.7
Ciclev10028680m.g Citrus clementina HOM05D005703 ORTHO05D006643 2.1e-117 426.4 315 72.7
Glyma.12G038800 Glycine max HOM05D005703 ORTHO05D006643 7.9e-117 424.5 277 76.2
Lalb_Chr03g0025421 Lupinus albus HOM05D005703 ORTHO05D006643 1.8e-116 423.3 277 76.9
HanXRQChr12g0373591 Helianthus annuus HOM05D005703 ORTHO05D006643 1.1e-115 420.6 277 77.3
ECA234G1754 Erigeron canadensis HOM05D005703 ORTHO05D006643 2.6e-115 419.5 271 78.6
FAN15G0097 Fragaria x ananassa HOM05D005703 ORTHO05D006643 4.4e-115 418.7 331 69.8
Ca_20918_v3 Cicer arietinum L. HOM05D005703 ORTHO05D006643 7.4e-115 417.9 301 71.4
Migut.B00193 Erythranthe guttata HOM05D005703 ORTHO05D006643 7.4e-115 417.9 287 74.9
THA.LOC104824803 Tarenaya hassleriana HOM05D005703 ORTHO05D006643 7.4e-115 417.9 273 76.6
Carub.0004s0043 Capsella rubella HOM05D005703 ORTHO05D006643 9.7e-115 417.5 313 68.4
CARHR112270 Cardamine hirsuta HOM05D005703 ORTHO05D006643 1.7e-114 416.8 314 67.8
AUR62010417 Chenopodium quinoa HOM05D005703 ORTHO05D006643 2.8e-114 416.0 301 74.4
ATR0661G148 Amborella trichopoda HOM05D005703 ORTHO05D006643 3.7e-114 415.6 275 76.4
Prupe.8G088000 Prunus persica HOM05D005703 ORTHO05D006643 3.7e-114 415.6 278 79.9
Lsat_1_v5_gn_5_125081 Lactuca sativa HOM05D005703 ORTHO05D006643 4.8e-114 415.2 304 73.7
AT2G21385 Arabidopsis thaliana HOM05D005703 ORTHO05D006643 8.2e-114 414.5 296 69.9
AL4G10560 Arabidopsis lyrata HOM05D005703 ORTHO05D006643 1.4e-113 413.7 315 67.3
Aa31LG7G15130 Aethionema arabicum HOM05D005703 ORTHO05D001153 1.8e-113 413.3 281 74.7
AUR62016798 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.1e-113 412.5 316 70.3
Medtr4g071190 Medicago truncatula HOM05D005703 ORTHO05D006643 3.1e-113 412.5 275 75.3
Sp4g00560 Schrenkiella parvula HOM05D005703 ORTHO05D006643 1.2e-112 410.6 313 68.7
Dinv23475 Davidia involucrata HOM05D005703 ORTHO05D006643 5.9e-112 408.3 261 83.5
Psat7g139960 Pisum sativum HOM05D005703 ORTHO05D006643 5.9e-112 408.3 294 73.1
arahy.Tifrunner.gnm1.ann1.YBLQ63 Arachis hypogaea HOM05D005703 ORTHO05D006643 8.5e-111 404.4 272 75.0
HPP92_025877 Vanilla planifolia HOM05D005703 ORTHO05D006643 8.5e-111 404.4 274 75.2
Nitab4.5_0011132g0020 Nicotiana tabacum HOM05D005703 ORTHO05D006643 1.8e-108 396.7 283 75.6
A09p58290 Brassica napus HOM05D005703 ORTHO05D006643 3.0e-108 396.0 318 66.0
Phvul.011G040900 Phaseolus vulgaris HOM05D005703 ORTHO05D006643 3.0e-108 396.0 258 76.4
BraA09t41216Z Brassica rapa HOM05D005703 ORTHO05D006643 5.2e-108 395.2 319 65.8
C08p41580 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-107 393.7 317 66.2
Os09g0531100 Oryza sativa ssp. japonica HOM05D005703 ORTHO05D006643 1.5e-107 393.7 275 72.0
BolC8t51720H Brassica oleracea HOM05D005703 ORTHO05D006643 4.4e-107 392.1 318 65.7
CDE09G1081 Ceratophyllum demersum HOM05D005703 ORTHO05D006643 4.4e-107 392.1 310 68.1
Haze_02308 Corylus avellana HOM05D005703 ORTHO05D006643 2.4e-105 386.3 277 76.2
Hma1.2p1_0066F.1_g035920 Hydrangea macrophylla HOM05D005703 ORTHO05D006643 9.1e-105 384.4 277 74.4
Zm00001eb353590 Zea mays HOM05D005703 ORTHO05D006643 3.5e-104 382.5 274 70.1
MELO3C013421.2 Cucumis melo HOM05D005703 ORTHO05D006643 1.8e-100 370.2 278 73.0
Thhalv10000241m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 4.0e-100 369.0 251 73.7
SGA_v2.0_scaffold58G20483 Striga asiatica HOM05D005703 ORTHO05D006643 6.7e-100 368.2 277 70.8
SalBow6G5125 Salvia bowleyana HOM05D005703 ORTHO05D006643 8.8e-100 367.9 276 70.7
ClCG02G004580 Citrullus lanatus HOM05D005703 ORTHO05D006643 1.8e-97 360.1 289 70.2
arahy.Tifrunner.gnm1.ann1.R55P3J Arachis hypogaea HOM05D005703 ORTHO05D006643 2.7e-96 356.3 245 73.9
DCAR_022931 Daucus carota HOM05D005703 ORTHO05D006643 3.5e-96 355.9 285 66.7
vmacro17444 Vaccinium macrocarpon HOM05D005703 ORTHO05D006643 3.8e-95 352.4 281 68.7
EL10Ac9g21670 Beta vulgaris HOM05D005703 ORTHO05D006643 1.1e-94 350.9 299 63.9
CANSAT11G2682 Cannabis sativa HOM05D005703 ORTHO05D006643 4.4e-91 339.0 290 66.9
Nitab4.5_0002723g0090 Nicotiana tabacum HOM05D005703 ORTHO05D006643 5.7e-91 338.6 273 69.6
Hund00227 Selenicereus undatus HOM05D005703 ORTHO05D006643 5.4e-89 332.0 278 65.1
Sed0007704 Sechium edule HOM05D005703 ORTHO05D006643 2.7e-88 329.7 210 82.9
FAN24G3327 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.8e-87 325.9 278 64.7
FAN27G2042 Fragaria x ananassa HOM05D005703 ORTHO05D006643 5.0e-87 325.5 278 64.4
FAN20G2472 Fragaria x ananassa HOM05D005703 ORTHO05D006643 3.2e-86 322.8 307 59.9
Cfa005074 Carpinus fangiana HOM05D005703 ORTHO05D006643 6.8e-84 315.1 188 88.3
Cc02_g17090 Coffea canephora HOM05D005703 ORTHO05D006643 7.5e-83 311.6 197 81.2
Lj5C191G8 Lonicera japonica HOM05D005703 ORTHO05D006643 2.2e-82 310.1 276 64.9
Pp3c22_4620 Physcomitrium patens HOM05D005703 ORTHO05D006643 7.8e-80 301.6 285 54.4
Mapoly0084s0041 Marchantia polymorpha HOM05D005703 ORTHO05D006643 3.6e-77 292.7 264 56.1
unitig_0.g54 Utricularia gibba HOM05D005703 ORTHO05D006643 2.0e-75 287.0 198 71.7
SMO356G0671 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 5.4e-73 278.9 268 54.1
SMO290G0004 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 6.6e-71 271.9 270 53.3
SMO290G0013 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 1.1e-70 271.2 270 53.3
BcaB06g27102 Brassica carinata HOM05D005703 ORTHO05D006643 1.5e-67 260.8 260 56.5
SMO356G0278 Selaginella moellendorffii HOM05D005703 ORTHO05D006643 3.4e-67 259.6 270 52.2
Gohir.A12G041600 Gossypium hirsutum HOM05D005703 ORTHO05D006643 1.7e-66 257.3 163 81.0
BraA01t01909Z Brassica rapa HOM05D005703 ORTHO05D006643 8.1e-61 238.4 207 63.3
Duzib132G0736 Durio zibethinus HOM05D005703 ORTHO05D006643 2.9e-58 229.9 347 44.1
Thhalv10005656m.g Eutrema salsugineum HOM05D005703 ORTHO05D006643 2.7e-56 223.4 154 73.4
AagrBONN_evm.TU.Sc2ySwM_228.378 Anthoceros agrestis HOM05D005703 ORTHO05D006643 1.7e-55 220.7 194 61.3
TAR381G0871 Trochodendron aralioides HOM05D005703 ORTHO05D006643 5.6e-46 189.1 116 81.9
MBI01_g29867_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 8.4e-42 175.3 134 70.1
BolC1t00937H Brassica oleracea HOM05D005703 ORTHO05D006643 7.1e-41 172.2 144 63.9
C01p09750 Brassica napus HOM05D005703 ORTHO05D006643 1.3e-37 161.4 186 51.6
BolC4t23697H Brassica oleracea HOM05D005703 ORTHO05D006643 8.4e-34 148.7 188 47.3
BolC2t11489H Brassica oleracea HOM05D005703 ORTHO05D006643 2.4e-33 147.1 186 48.9
CBR_g49480 Chara braunii HOM05D005703 ORTHO05D006643 4.2e-33 146.4 248 34.3
BcaC04g19425 Brassica carinata HOM05D005703 ORTHO05D006643 3.9e-31 139.8 225 43.6
C04p21760 Brassica napus HOM05D005703 ORTHO05D006643 8.7e-31 138.7 212 42.9
C09p55850 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-30 137.9 214 43.5
QL11p045593 Quercus lobata HOM05D005703 ORTHO05D006643 1.6e-29 134.4 73 89.0
Cre08.g372000 Chlamydomonas reinhardtii HOM05D005703 ORTHO05D006643 2.6e-27 127.1 263 33.5
Potri.009G121902 Populus trichocarpa HOM05D005703 ORTHO05D006643 5.8e-27 125.9 104 65.4
BcaC01g06448 Brassica carinata HOM05D005703 ORTHO05D006643 4.9e-26 122.9 137 54.0
C02p54250 Brassica napus HOM05D005703 ORTHO05D006643 2.4e-25 120.6 212 41.5
HanXRQChr14g0433731 Helianthus annuus HOM05D005703 ORTHO05D006643 5.5e-25 119.4 79 81.0
QL11p045598 Quercus lobata HOM05D005703 ORTHO05D006643 1.0e-23 115.2 68 83.8
PRCOL_00000952 Prasinoderma coloniale HOM05D005703 ORTHO05D006643 1.8e-23 114.4 232 32.8
MBI01_g29866_MAGBIO Magnolia biondii HOM05D005703 ORTHO05D006643 3.0e-23 113.6 79 72.2
Cc02_g17080 Coffea canephora HOM05D005703 ORTHO05D006643 8.7e-23 112.1 68 80.9
unitig_0.g53 Utricularia gibba HOM05D005703 ORTHO05D006643 6.9e-20 102.4 69 72.5
SEGI_33335 Sequoiadendron giganteum HOM05D005703 ORTHO05D006643 1.2e-19 101.7 90 57.8
C03p15450 Brassica napus HOM05D005703 ORTHO05D006643 4.6e-16 89.7 151 40.4
BcaC09g52221 Brassica carinata HOM05D005703 ORTHO05D006643 3.0e-15 87.0 61 73.8
C03p56750 Brassica napus HOM05D005703 ORTHO05D006643 1.5e-14 84.7 128 39.8
BolC1t00936H Brassica oleracea HOM05D005703 ORTHO05D006643 2.8e-13 80.5 61 68.9
C03p56740 Brassica napus HOM05D005703 ORTHO05D006643 6.3e-13 79.3 78 56.4
Lsat_1_v5_gn_1_61800 Lactuca sativa HOM05D005428 ORTHO05D002547 4.5e-11 73.2 57 70.2
Oeu037764.1 Olea europaea HOM05D005703 ORTHO05D006643 3.2e-09 67.0 47 68.1
TAR381G1022 Trochodendron aralioides HOM05D005703 ORTHO05D006643 9.3e-09 65.5 36 88.9
MCO02G267 Micromonas commoda HOM05D005703 ORTHO05D006643 2.7e-08 63.9 148 31.1
AUR62033094 Chenopodium quinoa HOM05D005703 ORTHO05D006643 3.6e-08 63.5 52 59.6
CAN.G878.5 Capsicum annuum HOM05D000269 ORTHO05D000216 4.6e-08 63.2 47 63.8


User provided reference genes

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