Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001330 Camellia sinensis var. sinensis HOM05D007071 ORTHO05D008677 7.5e-46 186.8 93 100.0
Actinidia37784 Actinidia chinensis HOM05D007071 ORTHO05D008677 7.3e-17 90.5 65 67.7
Dinv25088 Davidia involucrata HOM05D007071 ORTHO05D008677 1.2e-16 89.7 65 67.7
Nn2g14444 Nelumbo nucifera HOM05D007071 ORTHO05D008677 2.4e-15 85.5 65 67.7
QL07p025881 Quercus lobata HOM05D007071 ORTHO05D008677 5.2e-15 84.3 60 63.3
CiPaw.09G025100 Carya illinoinensis HOM05D007071 ORTHO05D008677 6.8e-15 84.0 60 65.0
Gohir.A09G131600 Gossypium hirsutum HOM05D007071 ORTHO05D008677 4.4e-14 81.3 66 59.1
Gohir.D09G127800 Gossypium hirsutum HOM05D007071 ORTHO05D008677 4.4e-14 81.3 66 59.1
Gorai.006G146400 Gossypium raimondii HOM05D007071 ORTHO05D008677 4.4e-14 81.3 66 59.1
TWI77G0807 Tripterygium wilfordii HOM05D007071 ORTHO05D008677 4.4e-14 81.3 65 61.5
Cfa020101 Carpinus fangiana HOM05D007071 ORTHO05D008677 5.8e-14 80.9 60 63.3
Manes.08G038400 Manihot esculenta HOM05D007071 ORTHO05D008677 5.8e-14 80.9 65 60.0
RcHm_v2.0_Chr3g0477671 Rosa chinensis HOM05D007071 ORTHO05D008677 1.3e-13 79.7 65 66.2
Rhsim03G0057500 Rhododendron simsii HOM05D007071 ORTHO05D008677 1.7e-13 79.3 65 63.1
Duzib093G1750 Durio zibethinus HOM05D007071 ORTHO05D008677 2.2e-13 79.0 65 60.0
MD14G1046200 Malus domestica HOM05D007071 ORTHO05D008677 8.4e-13 77.0 65 64.6
vmacro07528 Vaccinium macrocarpon HOM05D007071 ORTHO05D008677 1.4e-12 76.3 72 61.1
FvH4_6g21190 Fragaria vesca HOM05D007071 ORTHO05D008677 1.9e-12 75.9 65 63.1
COL.COLO4_29462 Corchorus olitorius HOM05D007071 ORTHO05D008677 2.4e-12 75.5 65 60.0
Prupe.7G088000 Prunus persica HOM05D007071 ORTHO05D008677 4.2e-12 74.7 65 63.1
Sc01g0005210 Simmondsia chinensis HOM05D007071 ORTHO05D008677 4.2e-12 74.7 65 55.4
Sabra16G0066300 Salix brachista HOM05D007071 ORTHO05D008677 7.1e-12 73.9 70 58.6
PSO339G2219 Papaver somniferum HOM05D007071 ORTHO05D008677 1.6e-11 72.8 65 55.4
GSVIVG01022502001 Vitis vinifera HOM05D007071 ORTHO05D008677 2.1e-11 72.4 65 61.5
MBI11_g24568_MAGBIO Magnolia biondii HOM05D007071 ORTHO05D008677 6.0e-11 70.9 65 56.9
arahy.Tifrunner.gnm1.ann1.B8MRUG Arachis hypogaea HOM05D007071 ORTHO05D008677 7.8e-11 70.5 64 56.2
ECA248G1335 Erigeron canadensis HOM05D007071 ORTHO05D008677 7.8e-11 70.5 60 61.7
Aqoxy2G00613 Aquilegia oxysepala HOM05D007071 ORTHO05D008677 1.3e-10 69.7 65 55.4
AL6G16680 Arabidopsis lyrata HOM05D007071 ORTHO05D008677 1.3e-10 69.7 65 52.3
AT5G06590 Arabidopsis thaliana HOM05D007071 ORTHO05D008677 1.3e-10 69.7 65 52.3
Potri.016G064200 Populus trichocarpa HOM05D007071 ORTHO05D008677 1.3e-10 69.7 65 53.8
Hund10779 Selenicereus undatus HOM05D007071 ORTHO05D008677 1.7e-10 69.3 60 55.0
THA.LOC104809942 Tarenaya hassleriana HOM05D007071 ORTHO05D008677 2.3e-10 68.9 60 56.7
AUR62036298 Chenopodium quinoa HOM05D007071 ORTHO05D008677 3.0e-10 68.6 65 52.3
Eucgr.A02531 Eucalyptus grandis HOM05D007071 ORTHO05D008677 3.9e-10 68.2 60 56.7
arahy.Tifrunner.gnm1.ann1.P13BQJ Arachis hypogaea HOM05D007071 ORTHO05D008677 5.1e-10 67.8 64 54.7
A10p29800 Brassica napus HOM05D007071 ORTHO05D008677 8.7e-10 67.0 65 50.8
BolC9t59762H Brassica oleracea HOM05D007071 ORTHO05D008677 8.7e-10 67.0 65 50.8
HanXRQChr11g0347671 Helianthus annuus HOM05D007071 ORTHO05D008677 8.7e-10 67.0 65 56.9
Medtr7g107150 Medicago truncatula HOM05D007071 ORTHO05D008677 1.1e-09 66.6 60 56.7
CANSAT64G1821 Cannabis sativa HOM05D007071 ORTHO05D008677 1.5e-09 66.2 60 56.7
TPR.G14411 Trifolium pratense HOM05D007071 ORTHO05D008677 1.5e-09 66.2 60 56.7
C09p70180 Brassica napus HOM05D007071 ORTHO05D008677 1.9e-09 65.9 65 49.2
BraA10t45019Z Brassica rapa HOM05D007071 ORTHO05D008677 1.9e-09 65.9 65 49.2
AUR62038410 Chenopodium quinoa HOM05D000573 ORTHO05D008677 1.9e-09 65.9 65 50.8
TPR.G40805 Trifolium pratense HOM05D007071 ORTHO05D008677 1.9e-09 65.9 59 57.6
Sp6g36270 Schrenkiella parvula HOM05D007071 ORTHO05D008677 2.5e-09 65.5 65 47.7
Ah.12g059560 Amaranthus hybridus HOM05D007071 ORTHO05D008677 3.3e-09 65.1 65 52.3
Cpa.g.sc222.1 Carica papaya HOM05D007071 ORTHO05D008677 3.3e-09 65.1 65 53.8
Lsat_1_v5_gn_1_56481 Lactuca sativa HOM05D000137 ORTHO05D000503 3.3e-09 65.1 65 53.8
Lj1g0020560 Lotus japonicus HOM05D007071 ORTHO05D008677 3.3e-09 65.1 60 58.3
CARHR206610 Cardamine hirsuta HOM05D007071 ORTHO05D008677 7.3e-09 63.9 65 49.2
VMungo1383G1243 Vigna mungo HOM05D007071 ORTHO05D008677 7.3e-09 63.9 60 55.0
Glyma.19G203500 Glycine max HOM05D007071 ORTHO05D008677 1.3e-08 63.2 60 55.0
Thhalv10014151m.g Eutrema salsugineum HOM05D007071 ORTHO05D008677 1.6e-08 62.8 65 46.2
Glyma.03G206000 Glycine max HOM05D007071 ORTHO05D008677 1.6e-08 62.8 60 56.7
Phvul.001G199700 Phaseolus vulgaris HOM05D007071 ORTHO05D008677 1.6e-08 62.8 60 55.0
Cc06_g07070 Coffea canephora HOM05D007071 ORTHO05D008677 2.1e-08 62.4 65 49.2
PGR004G1089 Punica granatum HOM05D007071 ORTHO05D008677 2.1e-08 62.4 65 47.7
Carub.0006s0547 Capsella rubella HOM05D007071 ORTHO05D008677 2.8e-08 62.0 65 47.7
Peaxi162Scf00425g00036 Petunia axillaris HOM05D007071 ORTHO05D008677 3.6e-08 61.6 65 49.2
Peaxi162Scf00645g00018 Petunia axillaris HOM05D007071 ORTHO05D008677 3.6e-08 61.6 65 49.2
Atru.chr8.1251 Acer truncatum HOM05D007071 ORTHO05D008677 6.2e-08 60.8 58 50.0
Aa31sc291G40 Aethionema arabicum HOM05D007071 ORTHO05D008677 1.4e-07 59.7 64 48.4
Nitab4.5_0000117g0100 Nicotiana tabacum HOM05D007071 ORTHO05D008677 2.4e-07 58.9 65 50.8
Peaxi162Scf00414g00006 Petunia axillaris HOM05D007071 ORTHO05D008677 2.4e-07 58.9 59 52.5
MSTRG.5919 Avicennia marina HOM05D007071 ORTHO05D008677 5.3e-07 57.8 65 52.3
Solyc01g056990.3 Solanum lycopersicum HOM05D007071 ORTHO05D008677 5.3e-07 57.8 65 47.7
ClCG10G017880 Citrullus lanatus HOM05D007071 ORTHO05D008677 6.9e-07 57.4 61 49.2
Sopen01g021160 Solanum pennellii HOM05D007071 ORTHO05D008677 9.0e-07 57.0 65 47.7
Psat3g026600 Pisum sativum HOM05D007071 ORTHO05D008677 1.2e-06 56.6 65 46.2
SGA_v2.0_scaffold31G12809 Striga asiatica HOM05D007071 ORTHO05D008677 1.5e-06 56.2 60 50.0
MELO3C009585.2 Cucumis melo HOM05D007071 ORTHO05D008677 2.0e-06 55.8 61 47.5
CsaV3_3G038410 Cucumis sativus L. HOM05D007071 ORTHO05D008677 3.4e-06 55.1 61 47.5
Migut.J00748 Erythranthe guttata HOM05D007071 ORTHO05D008677 3.4e-06 55.1 64 48.4
Gohir.A06G128402 Gossypium hirsutum HOM05D007071 ORTHO05D008677 5.8e-06 54.3 45 53.3
MD12G1047800 Malus domestica HOM05D007071 ORTHO05D008677 9.9e-06 53.5 57 56.1


User provided reference genes

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