Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001325 Camellia sinensis var. sinensis HOM05D007418 ORTHO05D009419 6.1e-31 136.7 64 100.0
vmacro04241 Vaccinium macrocarpon HOM05D007418 ORTHO05D009419 1.5e-16 89.0 50 80.0
Actinidia16244 Actinidia chinensis HOM05D007418 ORTHO05D009419 7.3e-16 86.7 45 88.9
Dinv13469 Davidia involucrata HOM05D007418 ORTHO05D009419 2.9e-12 74.7 44 77.3
Hma1.2p1_0062F.1_g034220 Hydrangea macrophylla HOM05D007418 ORTHO05D009419 1.2e-10 69.3 50 64.0
Zm00001eb061520 Zea mays HOM05D007418 ORTHO05D009419 1.7e-09 65.5 60 53.3
Duzib160G0534 Durio zibethinus HOM05D007418 ORTHO05D009419 2.3e-09 65.1 44 70.5
Nitab4.5_0002351g0010 Nicotiana tabacum HOM05D007418 ORTHO05D009419 3.0e-09 64.7 47 66.0
TAR369G1115 Trochodendron aralioides HOM05D007418 ORTHO05D009419 3.9e-09 64.3 45 66.7
AUR62019167 Chenopodium quinoa HOM05D007418 ORTHO05D009419 5.0e-09 63.9 50 58.0
AUR62040906 Chenopodium quinoa HOM05D007418 ORTHO05D009419 5.0e-09 63.9 50 58.0
TWI60G0114 Tripterygium wilfordii HOM05D007418 ORTHO05D009419 5.0e-09 63.9 54 57.4
PSO339G6348 Papaver somniferum HOM05D007418 ORTHO05D009419 6.6e-09 63.5 51 58.8
PSO384G4713 Papaver somniferum HOM05D007418 ORTHO05D009419 6.6e-09 63.5 51 58.8
Nitab4.5_0004630g0080 Nicotiana tabacum HOM05D007418 ORTHO05D009419 8.6e-09 63.2 46 67.4
GSVIVG01025464001 Vitis vinifera HOM05D007418 ORTHO05D009419 8.6e-09 63.2 44 63.6
Gohir.A05G110100 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.9e-08 62.0 44 65.9
Gohir.D05G110400 Gossypium hirsutum HOM05D007418 ORTHO05D009419 1.9e-08 62.0 44 65.9
Gorai.009G114600 Gossypium raimondii HOM05D007418 ORTHO05D009419 1.9e-08 62.0 44 65.9
Cc01_g00020 Coffea canephora HOM05D007418 ORTHO05D009419 2.5e-08 61.6 45 60.0
Cc01_g03260 Coffea canephora HOM05D007418 ORTHO05D009419 2.5e-08 61.6 45 60.0
MBI04_g37007_MAGBIO Magnolia biondii HOM05D007418 ORTHO05D009419 3.3e-08 61.2 44 59.1
CAN.G752.2 Capsicum annuum HOM05D007418 ORTHO05D009419 5.6e-08 60.5 47 61.7
Peaxi162Scf00005g00613 Petunia axillaris HOM05D007418 ORTHO05D009419 5.6e-08 60.5 46 63.0
Thecc.06G017000 Theobroma cacao HOM05D007418 ORTHO05D009419 5.6e-08 60.5 44 63.6
Aqoxy1G00469 Aquilegia oxysepala HOM05D002514 ORTHO05D002761 7.3e-08 60.1 45 53.3
AL7G26640 Arabidopsis lyrata HOM05D007418 ORTHO05D009419 7.3e-08 60.1 45 60.0
Carub.0007s1463 Capsella rubella HOM05D007418 ORTHO05D009419 7.3e-08 60.1 45 60.0
Solyc01g044490.4 Solanum lycopersicum HOM05D007418 ORTHO05D009419 7.3e-08 60.1 46 63.0
Sopen01g018620 Solanum pennellii HOM05D007418 ORTHO05D009419 7.3e-08 60.1 46 63.0
CAN.G782.23 Capsicum annuum HOM05D007418 ORTHO05D009419 1.2e-07 59.3 52 57.7
THA.LOC104817736 Tarenaya hassleriana HOM05D007418 ORTHO05D009419 1.2e-07 59.3 45 60.0
CARHR233880 Cardamine hirsuta HOM05D007418 ORTHO05D009419 1.6e-07 58.9 45 57.8
DCAR_025361 Daucus carota HOM05D007418 ORTHO05D009419 1.6e-07 58.9 46 63.0
Aa31LG11G8030 Aethionema arabicum HOM05D007418 ORTHO05D009419 2.1e-07 58.5 45 57.8
BcaC05g28944 Brassica carinata HOM05D007418 ORTHO05D006651 2.1e-07 58.5 45 57.8
A05p33720 Brassica napus HOM05D007418 ORTHO05D006651 2.1e-07 58.5 45 57.8
C05p50730 Brassica napus HOM05D007418 ORTHO05D006651 2.1e-07 58.5 45 57.8
BolC5t33821H Brassica oleracea HOM05D007418 ORTHO05D009419 2.1e-07 58.5 45 57.8
BraA05t22194Z Brassica rapa HOM05D007418 ORTHO05D009419 2.1e-07 58.5 45 57.8
Thhalv10021419m.g Eutrema salsugineum HOM05D007418 ORTHO05D009419 2.1e-07 58.5 45 57.8
AT4G26310 Arabidopsis thaliana HOM05D007418 ORTHO05D009419 2.8e-07 58.2 45 57.8
Sc06g0004180 Simmondsia chinensis HOM05D007418 ORTHO05D009419 3.6e-07 57.8 47 53.2
ECA248G1985 Erigeron canadensis HOM05D007418 ORTHO05D009419 4.7e-07 57.4 47 59.6
Lsat_1_v5_gn_1_67260 Lactuca sativa HOM05D007418 ORTHO05D009419 4.7e-07 57.4 47 59.6
Pp3c1_29390 Physcomitrium patens HOM05D007418 ORTHO05D009419 4.7e-07 57.4 43 58.1
COL.COLO4_22858 Corchorus olitorius HOM05D007418 ORTHO05D009419 6.2e-07 57.0 44 59.1
HanXRQChr01g0021361 Helianthus annuus HOM05D007418 ORTHO05D009419 6.2e-07 57.0 47 59.6
Sp3g14020 Schrenkiella parvula HOM05D007418 ORTHO05D009419 6.2e-07 57.0 45 55.6
MD11G1003800 Malus domestica HOM05D007418 ORTHO05D009419 8.1e-07 56.6 51 54.9
Nn7g35872 Nelumbo nucifera HOM05D007418 ORTHO05D009419 1.1e-06 56.2 54 40.7
Oeu023704.1 Olea europaea HOM05D007418 ORTHO05D009419 1.1e-06 56.2 47 59.6
Manes.05G202800 Manihot esculenta HOM05D007418 ORTHO05D009419 1.8e-06 55.5 52 50.0
Mapoly0009s0101 Marchantia polymorpha HOM05D007418 ORTHO05D009419 2.3e-06 55.1 55 43.6
CAN.G132.16 Capsicum annuum HOM05D007418 ORTHO05D009419 3.1e-06 54.7 47 55.3
PGR119G2313 Punica granatum HOM05D007418 ORTHO05D009419 3.1e-06 54.7 50 52.0
SalBow2G0815 Salvia bowleyana HOM05D007418 ORTHO05D009419 3.1e-06 54.7 55 47.3
ATR0737G157 Amborella trichopoda HOM05D007418 ORTHO05D009419 4.0e-06 54.3 50 48.0
Prupe.6G003800 Prunus persica HOM05D007418 ORTHO05D009419 4.0e-06 54.3 45 57.8
Atru.chr3.2092 Acer truncatum HOM05D007418 ORTHO05D009419 5.2e-06 53.9 44 54.5
MSTRG.20939 Avicennia marina HOM05D007418 ORTHO05D009419 5.2e-06 53.9 46 50.0
Eucgr.J01769 Eucalyptus grandis HOM05D007418 ORTHO05D009419 8.9e-06 53.1 45 53.3


User provided reference genes

Program Settings