Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001315 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1304.3 670 100.0
CSS0040630 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1236.9 729 89.0
CSS0043328 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1110.1 727 82.1
CSS0049486 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1104.7 740 81.1
CSS0032490 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1103.6 740 80.9
CSS0023780 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 0.0e+00 1091.6 726 81.8
Dinv37416 Davidia involucrata HOM05D004914 ORTHO05D006512 1.5e-297 1025.8 735 75.9
Cc08_g05310 Coffea canephora HOM05D004914 ORTHO05D006512 4.7e-291 1004.2 742 73.5
Peaxi162Scf00053g00525 Petunia axillaris HOM05D004914 ORTHO05D006512 3.1e-290 1001.5 740 73.2
MD06G1017300 Malus domestica HOM05D004914 ORTHO05D006512 2.6e-289 998.4 737 73.3
HanXRQChr13g0411091 Helianthus annuus HOM05D004914 ORTHO05D006512 3.4e-289 998.0 732 72.8
RcHm_v2.0_Chr7g0213721 Rosa chinensis HOM05D004914 ORTHO05D006512 9.8e-289 996.5 732 73.9
Prupe.5G019100 Prunus persica HOM05D004914 ORTHO05D006512 2.2e-288 995.3 742 72.8
FvH4_5g24140 Fragaria vesca HOM05D004914 ORTHO05D006512 3.7e-288 994.6 732 73.8
GSVIVG01022810001 Vitis vinifera HOM05D004914 ORTHO05D006512 4.9e-288 994.2 735 72.9
Lj2g0015407 Lotus japonicus HOM05D004914 ORTHO05D006512 6.4e-288 993.8 740 72.7
Oeu046797.1 Olea europaea HOM05D004914 ORTHO05D006512 4.1e-287 991.1 747 72.6
Potri.003G104000 Populus trichocarpa HOM05D004914 ORTHO05D006512 1.2e-286 989.6 731 73.2
TAR375G1103 Trochodendron aralioides HOM05D004914 ORTHO05D006512 1.2e-286 989.6 742 72.1
RcHm_v2.0_Chr7g0213811 Rosa chinensis HOM05D004914 ORTHO05D006512 4.6e-286 987.6 732 73.6
MSTRG.25735 Avicennia marina HOM05D004914 ORTHO05D006512 7.8e-286 986.9 731 72.4
Phvul.002G127200 Phaseolus vulgaris HOM05D004914 ORTHO05D006512 3.0e-285 984.9 740 72.4
ECA240G3397 Erigeron canadensis HOM05D004914 ORTHO05D006512 3.9e-285 984.6 727 72.4
Ciclev10000444m.g Citrus clementina HOM05D004914 ORTHO05D006512 6.6e-285 983.8 733 72.6
Eucgr.E01217 Eucalyptus grandis HOM05D004914 ORTHO05D006512 1.1e-284 983.0 731 72.1
TPR.G17253 Trifolium pratense HOM05D004914 ORTHO05D006512 1.5e-284 982.6 733 72.7
Medtr5g026640 Medicago truncatula HOM05D004914 ORTHO05D006512 2.5e-284 981.9 731 72.4
Nn3g19257 Nelumbo nucifera HOM05D004914 ORTHO05D006512 5.6e-284 980.7 736 71.9
Atru.chr6.2105 Acer truncatum HOM05D004914 ORTHO05D006512 8.0e-283 976.9 736 72.8
CANSAT35G0949 Cannabis sativa HOM05D004914 ORTHO05D006512 8.0e-283 976.9 733 71.9
Glyma.04G123700 Glycine max HOM05D004914 ORTHO05D006512 1.4e-282 976.1 742 72.0
Nn1g02045 Nelumbo nucifera HOM05D004914 ORTHO05D006512 3.1e-282 974.9 732 71.7
CiPaw.13G121600 Carya illinoinensis HOM05D004914 ORTHO05D006512 4.0e-282 974.5 731 71.8
PGR042G1968 Punica granatum HOM05D004914 ORTHO05D006512 4.0e-282 974.5 738 70.6
Psat2g142640 Pisum sativum HOM05D004914 ORTHO05D006512 8.9e-282 973.4 730 71.1
VMungo1215G3133 Vigna mungo HOM05D004914 ORTHO05D006512 8.9e-282 973.4 741 71.5
Lsat_1_v5_gn_5_55660 Lactuca sativa HOM05D004914 ORTHO05D006512 1.5e-281 972.6 727 71.3
Solyc08g075570.4 Solanum lycopersicum HOM05D004914 ORTHO05D006512 5.8e-281 970.7 729 71.2
Duzib205G0746 Durio zibethinus HOM05D004914 ORTHO05D006512 2.9e-280 968.4 723 71.5
Rhsim11G0034500 Rhododendron simsii HOM05D004914 ORTHO05D006512 2.9e-280 968.4 743 72.7
Manes.17G007000 Manihot esculenta HOM05D004914 ORTHO05D006512 3.2e-279 964.9 728 71.2
Sopen08g024250 Solanum pennellii HOM05D004914 ORTHO05D006512 5.4e-279 964.1 729 71.1
ATR0829G119 Amborella trichopoda HOM05D004914 ORTHO05D006512 1.6e-278 962.6 739 70.1
Sabra03G0071100 Salix brachista HOM05D004914 ORTHO05D006512 2.7e-278 961.8 759 69.4
RcHm_v2.0_Chr4g0401521 Rosa chinensis HOM05D004914 ORTHO05D006512 1.3e-277 959.5 732 71.6
Thecc.03G324700 Theobroma cacao HOM05D004914 ORTHO05D006512 3.0e-277 958.4 719 71.9
TWI12G0750 Tripterygium wilfordii HOM05D004914 ORTHO05D006512 5.1e-277 957.6 728 71.6
RcHm_v2.0_Chr4g0401421 Rosa chinensis HOM05D004914 ORTHO05D006512 5.6e-276 954.1 732 70.9
Eucgr.E01215 Eucalyptus grandis HOM05D004914 ORTHO05D006512 7.3e-276 953.7 731 70.5
vmacro00075 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 1.2e-275 953.0 746 71.6
Gorai.005G228700 Gossypium raimondii HOM05D004914 ORTHO05D006512 1.1e-274 949.9 720 70.8
Aqoxy7G00885 Aquilegia oxysepala HOM05D004914 ORTHO05D006512 2.3e-274 948.7 728 70.6
SalBow4G0569 Salvia bowleyana HOM05D004914 ORTHO05D006512 3.7e-272 941.4 728 69.8
Lalb_Chr05g0215361 Lupinus albus HOM05D004914 ORTHO05D006512 6.0e-270 934.1 715 70.5
DCAR_006313 Daucus carota HOM05D004914 ORTHO05D006512 7.8e-270 933.7 729 70.2
Gohir.D02G202952 Gossypium hirsutum HOM05D004914 ORTHO05D006512 3.0e-269 931.8 720 69.7
Actinidia01258 Actinidia chinensis HOM05D004914 ORTHO05D006512 5.6e-268 927.5 707 72.6
arahy.Tifrunner.gnm1.ann1.AE6EEZ Arachis hypogaea HOM05D004914 ORTHO05D006512 1.6e-267 926.0 739 69.7
arahy.Tifrunner.gnm1.ann1.Q0IN0Q Arachis hypogaea HOM05D004914 ORTHO05D006512 1.6e-267 926.0 739 69.7
MELO3C013790.2 Cucumis melo HOM05D004914 ORTHO05D006512 6.2e-267 924.1 736 66.7
CsaV3_3G001000 Cucumis sativus L. HOM05D004914 ORTHO05D006512 4.0e-266 921.4 736 66.8
HPP92_015125 Vanilla planifolia HOM05D004914 ORTHO05D006512 1.4e-263 912.9 733 67.5
PSO717G0130 Papaver somniferum HOM05D004914 ORTHO05D006512 1.6e-262 909.4 738 68.3
Sed0010004 Sechium edule HOM05D004914 ORTHO05D006512 1.6e-262 909.4 736 66.2
SEGI_38788 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 6.0e-262 907.5 725 67.3
FAN13G2505 Fragaria x ananassa HOM05D004914 ORTHO05D006512 1.5e-260 902.9 731 69.1
ClCG10G000930 Citrullus lanatus HOM05D004914 ORTHO05D006512 1.3e-259 899.8 735 65.9
BraA09t37776Z Brassica rapa HOM05D004914 ORTHO05D006512 4.8e-259 897.9 728 66.6
BcaB07g30888 Brassica carinata HOM05D004914 ORTHO05D006512 6.2e-259 897.5 728 66.6
A09p21740 Brassica napus HOM05D004914 ORTHO05D006512 6.2e-259 897.5 728 66.5
BcaC04g21765 Brassica carinata HOM05D004914 ORTHO05D006512 6.9e-258 894.0 728 66.3
BolC9t55648H Brassica oleracea HOM05D004914 ORTHO05D006512 6.9e-258 894.0 728 66.3
CARHR176690 Cardamine hirsuta HOM05D004914 ORTHO05D006512 1.2e-257 893.3 729 65.8
Carub.0008s0273 Capsella rubella HOM05D004914 ORTHO05D006512 1.5e-257 892.9 729 66.0
C09p27840 Brassica napus HOM05D004914 ORTHO05D006512 5.8e-257 891.0 728 66.2
Sp2g10330 Schrenkiella parvula HOM05D004914 ORTHO05D006512 3.8e-256 888.3 728 65.4
QL12p001913 Quercus lobata HOM05D004914 ORTHO05D006512 4.9e-256 887.9 729 68.0
Aa31LG9G7630 Aethionema arabicum HOM05D004914 ORTHO05D006512 1.4e-255 886.3 725 66.3
CAN.G1731.1 Capsicum annuum HOM05D004914 ORTHO05D006512 7.1e-255 884.0 735 66.7
AT5G45380 Arabidopsis thaliana HOM05D004914 ORTHO05D006512 2.1e-254 882.5 729 65.0
Thhalv10000803m.g Eutrema salsugineum HOM05D004914 ORTHO05D006512 6.0e-254 880.9 726 64.7
A02p29100 Brassica napus HOM05D004914 ORTHO05D006512 2.1e-251 872.5 725 65.1
BraA02t07943Z Brassica rapa HOM05D004914 ORTHO05D006512 8.1e-251 870.5 725 65.0
Eucgr.E01216 Eucalyptus grandis HOM05D004914 ORTHO05D006512 8.1e-251 870.5 641 72.2
CDE12G0485 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 1.8e-250 869.4 720 65.1
Cpa.g.sc90.24 Carica papaya HOM05D004914 ORTHO05D006512 2.4e-250 869.0 682 69.6
BcaC03g16746 Brassica carinata HOM05D004914 ORTHO05D006512 5.8e-249 864.4 725 64.6
C02p46180 Brassica napus HOM05D004914 ORTHO05D006512 5.8e-249 864.4 725 64.6
BolC2t10674H Brassica oleracea HOM05D004914 ORTHO05D006512 5.8e-249 864.4 725 64.6
Ca_25087_v3 Cicer arietinum L. HOM05D004914 ORTHO05D006512 2.2e-248 862.4 646 71.7
BcaB07g30458 Brassica carinata HOM05D004914 ORTHO05D006512 2.4e-247 859.0 731 63.9
FAN04G0884 Fragaria x ananassa HOM05D004914 ORTHO05D006512 7.1e-247 857.4 701 68.6
SGA_v2.0_scaffold96G29079 Striga asiatica HOM05D004914 ORTHO05D006512 1.9e-244 849.4 739 65.6
EL10Ac5g11909 Beta vulgaris HOM05D004914 ORTHO05D006512 1.4e-242 843.2 717 64.2
Migut.A00542 Erythranthe guttata HOM05D004914 ORTHO05D006512 3.4e-241 838.6 684 67.0
QL12p001923 Quercus lobata HOM05D004914 ORTHO05D006512 1.7e-240 836.3 712 66.9
Pp3c1_21890 Physcomitrium patens HOM05D004914 ORTHO05D006512 2.2e-240 835.9 730 62.1
AL8G13420 Arabidopsis lyrata HOM05D004914 ORTHO05D006512 3.8e-240 835.1 703 64.2
Os10g0580400 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D006512 9.3e-239 830.5 719 63.0
Zm00001eb279810 Zea mays HOM05D004914 ORTHO05D006512 2.7e-238 828.9 710 63.5
SMO134G0146 Selaginella moellendorffii HOM05D004914 ORTHO05D006512 1.0e-237 827.0 682 65.5
Lj8C331T9 Lonicera japonica HOM05D004914 ORTHO05D006512 2.3e-237 825.9 675 68.9
Mapoly0022s0194 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.5e-236 822.4 731 61.7
Gohir.A03G179800 Gossypium hirsutum HOM05D004914 ORTHO05D006512 6.5e-232 807.7 610 71.1
Nitab4.5_0016045g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.3e-228 795.0 539 77.6
FAN18G4324 Fragaria x ananassa HOM05D004914 ORTHO05D006512 2.8e-227 792.3 569 75.7
Pp3c14_7160 Physcomitrium patens HOM05D004914 ORTHO05D006512 1.4e-226 790.0 665 63.6
unitig_92.g28131 Utricularia gibba HOM05D004914 ORTHO05D006512 6.9e-226 787.7 741 61.0
AUR62027313 Chenopodium quinoa HOM05D004914 ORTHO05D006512 1.5e-225 786.6 721 60.5
vmacro00050 Vaccinium macrocarpon HOM05D004914 ORTHO05D006512 9.4e-215 750.7 764 59.2
CDE01G0684 Ceratophyllum demersum HOM05D004914 ORTHO05D006512 7.7e-201 704.5 707 57.3
AagrBONN_evm.TU.Sc2ySwM_344.881 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.7e-193 679.5 567 65.3
Mapoly0244s0005 Marchantia polymorpha HOM05D004914 ORTHO05D006512 2.7e-193 679.5 564 65.6
AUR62007419 Chenopodium quinoa HOM05D004914 ORTHO05D006512 6.1e-190 668.3 522 68.6
PGSC0003DMG401007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 1.9e-183 646.7 477 73.2
CSS0015562 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.9e-175 620.2 573 62.3
SEGI_09515 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.4e-172 609.0 421 76.2
SEGI_28013 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.9e-171 605.5 419 76.4
MCO16G134 Micromonas commoda HOM05D004914 ORTHO05D006512 3.9e-168 595.9 707 48.8
COL.COLO4_37234 Corchorus olitorius HOM05D004914 ORTHO05D006512 1.4e-157 560.8 628 53.5
CBR_g12518 Chara braunii HOM05D004914 ORTHO05D006512 1.0e-152 544.7 632 48.1
CSS0048600 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.1e-149 534.6 426 70.4
Cre08.g360200 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 2.3e-136 490.3 651 43.9
Cre17.g703800 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 4.9e-131 472.6 651 42.7
Nitab4.5_0011552g0010 Nicotiana tabacum HOM05D004914 ORTHO05D006512 4.9e-131 472.6 471 59.4
Cre08.g360250 Chlamydomonas reinhardtii HOM05D004914 ORTHO05D006512 5.5e-130 469.2 651 41.9
Oeu046798.1 Olea europaea HOM05D004914 ORTHO05D006512 2.5e-119 433.7 686 42.7
AagrBONN_evm.TU.Sc2ySwM_117.1801 Anthoceros agrestis HOM05D004914 ORTHO05D006512 6.7e-104 382.5 643 37.0
Mapoly0006s0303 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.3e-103 379.8 651 36.1
Mapoly0339s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 7.2e-98 362.5 277 70.0
CSS0040069 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 1.2e-97 361.7 362 61.0
AagrBONN_evm.TU.Sc2ySwM_117.1769 Anthoceros agrestis HOM05D004914 ORTHO05D006512 7.9e-97 359.0 651 35.5
SEGI_18257 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 2.2e-94 350.9 269 67.7
AagrBONN_evm.TU.Sc2ySwM_228.2050 Anthoceros agrestis HOM05D004914 ORTHO05D006512 1.8e-93 347.8 637 35.6
AagrBONN_evm.TU.Sc2ySwM_228.2053 Anthoceros agrestis HOM05D004914 ORTHO05D006512 2.7e-89 334.0 385 47.8
PGSC0003DMG402007615 Solanum tuberosum HOM05D004914 ORTHO05D006512 9.8e-71 272.3 220 63.2
SEGI_16876 Sequoiadendron giganteum HOM05D004914 ORTHO05D006512 4.4e-63 246.9 251 58.2
CSS0006727 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 8.1e-49 199.5 171 68.4
FAN18G1875 Fragaria x ananassa HOM05D004914 ORTHO05D006512 6.8e-48 196.4 157 65.6
CSS0011428 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D006512 2.1e-33 148.3 78 92.3
Mapoly1910s0001 Marchantia polymorpha HOM05D004914 ORTHO05D006512 4.9e-30 137.1 138 52.9
arahy.Tifrunner.gnm1.ann1.N8W4DB Arachis hypogaea HOM05D004914 ORTHO05D000389 2.1e-25 121.7 60 86.7
arahy.Tifrunner.gnm1.ann1.3D8EL1 Arachis hypogaea HOM05D004914 ORTHO05D000389 4.0e-24 117.5 59 86.4
AagrBONN_evm.TU.Sc2ySwM_117.1738 Anthoceros agrestis HOM05D004914 ORTHO05D038447 5.8e-23 113.6 101 58.4
CSS0040812 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D111646 4.6e-20 104.0 62 85.5
CSS0009431 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D113607 7.9e-20 103.2 67 82.1
CSS0022754 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D109566 1.8e-19 102.1 62 85.5
CSS0001366 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112087 2.3e-19 101.7 67 80.6
CSS0022246 Camellia sinensis var. sinensis HOM05D004914 ORTHO05D112219 2.3e-19 101.7 89 61.8
Os02g0689066 Oryza sativa ssp. japonica HOM05D004914 ORTHO05D038447 4.5e-15 87.4 50 78.0
CBR_g12519 Chara braunii HOM05D004914 ORTHO05D006512 4.9e-14 84.0 119 42.9
arahy.Tifrunner.gnm1.ann1.D5QS8R Arachis hypogaea HOM05D000487 ORTHO05D000389 2.9e-06 58.2 30 76.7


User provided reference genes

Program Settings