Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001301 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 2.0e-192 675.6 347 100.0
CSS0012055 Camellia sinensis var. sinensis HOM05D005805 ORTHO05D007226 1.5e-152 543.1 348 81.9
Actinidia02051 Actinidia chinensis HOM05D005805 ORTHO05D007226 1.6e-149 533.1 344 79.7
Actinidia14511 Actinidia chinensis HOM05D005805 ORTHO05D007226 6.7e-148 527.7 347 79.3
Dinv39015 Davidia involucrata HOM05D005805 ORTHO05D007226 6.5e-135 484.6 317 78.2
Hma1.2p1_0371F.1_g138200 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 2.4e-129 466.1 339 72.6
TAR629G3121 Trochodendron aralioides HOM05D005805 ORTHO05D007226 4.1e-129 465.3 348 71.0
vmacro00648 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 7.0e-129 464.5 328 75.6
TAR375G0540 Trochodendron aralioides HOM05D005805 ORTHO05D007226 1.3e-127 460.3 348 69.3
Eucgr.D01927 Eucalyptus grandis HOM05D005805 ORTHO05D007226 3.6e-125 452.2 395 62.8
GSVIVG01019866001 Vitis vinifera HOM05D005805 ORTHO05D007226 1.5e-123 446.8 334 69.8
VMungo1215G3124 Vigna mungo HOM05D005805 ORTHO05D007226 3.3e-123 445.7 345 69.0
Ca_06662_v3 Cicer arietinum L. HOM05D005805 ORTHO05D007226 8.5e-119 431.0 350 64.6
Nn1g01331 Nelumbo nucifera HOM05D005805 ORTHO05D007226 1.2e-117 427.2 348 66.1
Lalb_Chr16g0379971 Lupinus albus HOM05D005805 ORTHO05D007226 6.1e-117 424.9 346 66.2
Sed0020250 Sechium edule HOM05D005805 ORTHO05D007226 6.1e-117 424.9 353 64.0
Glyma.11G026600 Glycine max HOM05D005805 ORTHO05D007226 8.0e-117 424.5 359 63.8
CAN.G981.40 Capsicum annuum HOM05D005805 ORTHO05D007226 3.0e-116 422.5 355 65.9
Sopen08g028610 Solanum pennellii HOM05D005805 ORTHO05D007226 8.8e-116 421.0 354 66.4
Lsat_1_v5_gn_6_12941 Lactuca sativa HOM05D005805 ORTHO05D007226 4.4e-115 418.7 349 64.2
Nitab4.5_0009882g0030 Nicotiana tabacum HOM05D005805 ORTHO05D007226 1.7e-114 416.8 378 62.4
Lalb_Chr05g0214771 Lupinus albus HOM05D005805 ORTHO05D007226 3.7e-114 415.6 345 64.3
Glyma.01G215800 Glycine max HOM05D005805 ORTHO05D007226 1.1e-113 414.1 359 63.2
Phvul.002G153800 Phaseolus vulgaris HOM05D005805 ORTHO05D007226 4.1e-113 412.1 315 69.8
CiPaw.11G141700 Carya illinoinensis HOM05D005805 ORTHO05D007226 1.0e-111 407.5 451 52.8
PGSC0003DMG400022755 Solanum tuberosum HOM05D005805 ORTHO05D007226 1.3e-111 407.1 323 67.5
Ciclev10020090m.g Citrus clementina HOM05D005805 ORTHO05D007226 2.2e-111 406.4 463 54.0
MELO3C005626.2 Cucumis melo HOM05D005805 ORTHO05D007226 5.5e-110 401.7 329 64.7
arahy.Tifrunner.gnm1.ann1.8FZ8QS Arachis hypogaea HOM05D005805 ORTHO05D007226 1.6e-109 400.2 414 56.3
Cfa012095 Carpinus fangiana HOM05D005805 ORTHO05D007226 6.1e-109 398.3 482 50.0
Nitab4.5_0001714g0200 Nicotiana tabacum HOM05D005805 ORTHO05D007226 8.0e-109 397.9 345 63.5
Potri.001G111100 Populus trichocarpa HOM05D005805 ORTHO05D007226 8.0e-109 397.9 471 51.2
ClCG01G003160 Citrullus lanatus HOM05D005805 ORTHO05D007226 1.8e-108 396.7 395 55.9
Solyc08g080260.4 Solanum lycopersicum HOM05D005805 ORTHO05D007226 4.0e-108 395.6 361 62.9
HanXRQChr02g0048701 Helianthus annuus HOM05D005805 ORTHO05D007226 5.2e-108 395.2 350 62.3
QL12p017075 Quercus lobata HOM05D005805 ORTHO05D007226 1.2e-107 394.0 457 52.7
Rhsim08G0109800 Rhododendron simsii HOM05D000003 ORTHO05D000004 2.0e-107 393.3 341 66.0
Cc08_g13930 Coffea canephora HOM05D005805 ORTHO05D007226 2.6e-107 392.9 355 63.1
Dinv37696 Davidia involucrata HOM05D005805 ORTHO05D007226 5.7e-107 391.7 280 73.6
Oeu031590.1 Olea europaea HOM05D005805 ORTHO05D007226 5.7e-107 391.7 373 59.8
Lj2A197T60 Lonicera japonica HOM05D005805 ORTHO05D007226 7.5e-107 391.3 349 61.9
Lj2g0007037 Lotus japonicus HOM05D005805 ORTHO05D007226 7.5e-107 391.3 476 48.7
CiPaw.12G099000 Carya illinoinensis HOM05D005805 ORTHO05D007226 2.8e-106 389.4 461 50.5
Psat2g181520 Pisum sativum HOM05D005805 ORTHO05D007226 3.7e-106 389.0 439 53.1
Migut.A00918 Erythranthe guttata HOM05D005805 ORTHO05D007226 6.3e-106 388.3 391 56.0
Potri.003G120900 Populus trichocarpa HOM05D005805 ORTHO05D007226 1.4e-105 387.1 486 49.4
Thecc.03G270600 Theobroma cacao HOM05D005805 ORTHO05D007226 3.1e-105 386.0 428 52.3
Duzib068G1011 Durio zibethinus HOM05D005805 ORTHO05D007226 9.1e-105 384.4 347 61.1
TPR.G6662 Trifolium pratense HOM05D005805 ORTHO05D007226 1.0e-103 380.9 441 52.2
Peaxi162Scf00620g00920 Petunia axillaris HOM05D005805 ORTHO05D007226 8.6e-103 377.9 381 56.7
Duzib205G1286 Durio zibethinus HOM05D005805 ORTHO05D007226 7.2e-102 374.8 431 50.6
Aqoxy7G00467 Aquilegia oxysepala HOM05D005805 ORTHO05D007226 1.2e-101 374.0 302 65.6
Duzib084G0260 Durio zibethinus HOM05D005805 ORTHO05D007226 1.4e-100 370.5 440 50.2
Medtr5g010950 Medicago truncatula HOM05D005805 ORTHO05D007226 1.4e-100 370.5 358 59.2
PGR031G2899 Punica granatum HOM05D005805 ORTHO05D007226 1.4e-100 370.5 436 51.8
Prupe.5G089600 Prunus persica HOM05D005805 ORTHO05D007226 5.2e-100 368.6 516 46.5
Gorai.003G162800 Gossypium raimondii HOM05D005805 ORTHO05D007226 8.9e-100 367.9 452 48.2
FAN13G0947 Fragaria x ananassa HOM05D005805 ORTHO05D007226 2.0e-99 366.7 484 46.5
Gohir.D03G155100 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.4e-99 365.9 452 48.0
Gohir.A03G015238 Gossypium hirsutum HOM05D005805 ORTHO05D007226 4.4e-99 365.5 443 48.5
MD06G1071900 Malus domestica HOM05D005805 ORTHO05D007226 4.4e-99 365.5 500 46.6
FvH4_5g01420 Fragaria vesca HOM05D005805 ORTHO05D007226 5.7e-99 365.2 492 46.1
FAN08G1094 Fragaria x ananassa HOM05D005805 ORTHO05D007226 7.5e-99 364.8 502 45.4
Gorai.004G207600 Gossypium raimondii HOM05D005805 ORTHO05D007226 7.5e-99 364.8 397 52.6
MD04G1068600 Malus domestica HOM05D005805 ORTHO05D007226 9.8e-99 364.4 500 46.2
FAN04G0223 Fragaria x ananassa HOM05D005805 ORTHO05D007226 3.7e-98 362.5 493 45.6
FAN18G3929 Fragaria x ananassa HOM05D005805 ORTHO05D007226 4.9e-98 362.1 492 45.9
CANSAT21G1670 Cannabis sativa HOM05D005805 ORTHO05D007226 1.4e-97 360.5 523 44.0
ECA233G3280 Erigeron canadensis HOM05D005805 ORTHO05D007226 2.4e-97 359.8 432 48.1
CsaV3_5G003280 Cucumis sativus L. HOM05D005805 ORTHO05D007226 7.0e-97 358.2 278 66.2
MBI04_g40844_MAGBIO Magnolia biondii HOM05D005805 ORTHO05D007226 1.2e-96 357.5 349 58.5
HanXRQChr07g0188541 Helianthus annuus HOM05D005805 ORTHO05D007226 3.5e-96 355.9 331 59.8
Manes.01G068001 Manihot esculenta HOM05D005805 ORTHO05D007226 3.5e-96 355.9 423 50.4
Sabra01G0084700 Salix brachista HOM05D005805 ORTHO05D007226 5.9e-96 355.1 503 45.7
RcHm_v2.0_Chr7g0199441 Rosa chinensis HOM05D005805 ORTHO05D007226 5.6e-94 348.6 511 42.9
TWI81G0996 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 9.5e-94 347.8 471 47.1
THA.LOC104814292 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.3e-92 343.2 417 50.6
arahy.Tifrunner.gnm1.ann1.J6ALFQ Arachis hypogaea HOM05D005805 ORTHO05D007226 5.2e-92 342.0 483 44.7
THA.LOC104806368 Tarenaya hassleriana HOM05D005805 ORTHO05D007226 2.6e-91 339.7 427 48.9
TWI60G0251 Tripterygium wilfordii HOM05D005805 ORTHO05D007226 2.2e-90 336.7 481 43.5
Oeu001898.3 Olea europaea HOM05D005805 ORTHO05D007226 3.7e-90 335.9 357 57.1
Haze_08957 Corylus avellana HOM05D005805 ORTHO05D007226 1.2e-88 330.9 495 44.8
Gohir.A08G178400 Gossypium hirsutum HOM05D005805 ORTHO05D007226 3.5e-88 329.3 472 44.3
Thhalv10028709m.g Eutrema salsugineum HOM05D005805 ORTHO05D007226 6.0e-88 328.6 411 48.4
Sed0020925 Sechium edule HOM05D005805 ORTHO05D007226 1.0e-87 327.8 280 60.7
Sc01g0008800 Simmondsia chinensis HOM05D005805 ORTHO05D007226 1.0e-87 327.8 454 45.6
A02p25990 Brassica napus HOM05D005805 ORTHO05D007226 6.6e-87 325.1 380 50.5
BraA02t07597Z Brassica rapa HOM05D005805 ORTHO05D007226 6.6e-87 325.1 380 50.5
Aa31LG9G10640 Aethionema arabicum HOM05D005805 ORTHO05D007226 6.2e-85 318.5 412 48.8
BolC9t56310H Brassica oleracea HOM05D005805 ORTHO05D007226 1.8e-84 317.0 412 47.3
BraA09t38298Z Brassica rapa HOM05D005805 ORTHO05D007226 1.3e-82 310.8 412 47.1
BcaB05g23807 Brassica carinata HOM05D005805 ORTHO05D007226 2.4e-81 306.6 411 45.5
C09p34650 Brassica napus HOM05D005805 ORTHO05D007226 4.1e-81 305.8 432 45.1
A09p27320 Brassica napus HOM05D005805 ORTHO05D007226 5.1e-79 298.9 432 44.7
Carub.0006s3090 Capsella rubella HOM05D005805 ORTHO05D007226 5.1e-79 298.9 444 43.7
ATR0757G009 Amborella trichopoda HOM05D005805 ORTHO05D007226 8.6e-79 298.1 297 53.2
AL6G46500 Arabidopsis lyrata HOM05D005805 ORTHO05D007226 8.6e-79 298.1 442 44.8
CARHR254520 Cardamine hirsuta HOM05D005805 ORTHO05D007226 1.9e-78 297.0 413 46.0
HPP92_020989 Vanilla planifolia HOM05D005805 ORTHO05D007226 2.5e-78 296.6 428 44.6
unitig_8.g3899 Utricularia gibba HOM05D005805 ORTHO05D007226 4.3e-78 295.8 349 51.9
Sp6g05660 Schrenkiella parvula HOM05D005805 ORTHO05D007226 8.9e-76 288.1 404 46.0
EL10Ac5g12722 Beta vulgaris HOM05D005805 ORTHO05D007226 3.7e-74 282.7 456 40.6
CDE11G0359 Ceratophyllum demersum HOM05D005805 ORTHO05D007226 3.7e-74 282.7 497 38.2
AT4G11790 Arabidopsis thaliana HOM05D005805 ORTHO05D007226 4.9e-74 282.3 460 42.2
PSO478G0076 Papaver somniferum HOM05D005805 ORTHO05D007226 3.5e-72 276.2 580 35.7
AUR62010661 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.0e-71 274.6 456 40.6
Hund28361 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.9e-70 270.4 479 38.2
Hund28365 Selenicereus undatus HOM05D005805 ORTHO05D007226 1.9e-70 270.4 479 38.2
AUR62017300 Chenopodium quinoa HOM05D005805 ORTHO05D007226 1.2e-69 267.7 456 40.1
BcaC03g16328 Brassica carinata HOM05D005805 ORTHO05D007226 6.2e-69 265.4 310 50.0
Manes.02G028100 Manihot esculenta HOM05D005805 ORTHO05D007226 1.1e-68 264.6 368 45.4
PSO782G3262 Papaver somniferum HOM05D005805 ORTHO05D007226 1.4e-68 264.2 585 34.5
SalBow6G0943 Salvia bowleyana HOM05D005805 ORTHO05D007226 4.4e-67 259.2 350 46.3
vmacro10803 Vaccinium macrocarpon HOM05D005805 ORTHO05D007226 5.8e-67 258.8 310 52.6
Os03g0667700 Oryza sativa ssp. japonica HOM05D005805 ORTHO05D007226 2.2e-66 256.9 377 42.2
Ah.12g057730 Amaranthus hybridus HOM05D005805 ORTHO05D007226 4.9e-66 255.8 467 39.0
Zm00001eb073520 Zea mays HOM05D005805 ORTHO05D007226 1.6e-64 250.8 449 40.1
BcaB01g01678 Brassica carinata HOM05D005805 ORTHO05D007226 4.8e-61 239.2 338 45.0
C02p41470 Brassica napus HOM05D005805 ORTHO05D007226 3.1e-60 236.5 314 46.2
COL.COLO4_05276 Corchorus olitorius HOM05D005805 ORTHO05D007226 7.9e-56 221.9 139 77.7
Cpa.g.sc29.9 Carica papaya HOM05D005805 ORTHO05D007226 1.1e-54 218.0 357 42.0
TAR374G1484 Trochodendron aralioides HOM05D005805 ORTHO05D007226 5.3e-52 209.1 149 73.2
Gohir.D08G196900 Gossypium hirsutum HOM05D005805 ORTHO05D007226 1.5e-51 207.6 141 73.0
Atru.chr9.1535 Acer truncatum HOM05D005805 ORTHO05D007226 1.3e-50 204.5 218 57.3
Ah.02g116420 Amaranthus hybridus HOM05D005805 ORTHO05D007226 1.7e-42 177.6 451 33.3
BolC2t10164H Brassica oleracea HOM05D005805 ORTHO05D007226 7.6e-35 152.1 113 69.0
DCAR_006764 Daucus carota HOM05D005805 ORTHO05D007226 4.6e-32 142.9 169 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4489 Anthoceros agrestis HOM05D005805 ORTHO05D007226 4.5e-27 126.3 348 30.2
COL.COLO4_05274 Corchorus olitorius HOM05D005805 ORTHO05D007226 8.5e-26 122.1 74 79.7
Hma1.2p1_0002F.1_g002590 Hydrangea macrophylla HOM05D005805 ORTHO05D007226 1.2e-24 118.2 76 73.7
SGA_v2.0_scaffold60G20821 Striga asiatica HOM05D011763 ORTHO05D014257 7.2e-17 92.4 320 31.2
CBR_g49019 Chara braunii HOM05D005805 ORTHO05D007226 1.1e-14 85.1 102 41.2
SGA_v2.0_scaffold60G21020 Striga asiatica HOM05D011763 ORTHO05D014257 6.3e-13 79.3 154 36.4


User provided reference genes

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