Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
CSS0001295 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 3.4e-46 188.0 93 100.0
CSS0038379 Camellia sinensis var. sinensis HOM05D008028 ORTHO05D010005 9.8e-46 186.4 93 98.9
Actinidia00552 Actinidia chinensis HOM05D008028 ORTHO05D010005 3.3e-33 144.8 93 79.6
Dinv42036 Davidia involucrata HOM05D008028 ORTHO05D010005 7.5e-30 133.7 95 76.8
Actinidia07487 Actinidia chinensis HOM05D008028 ORTHO05D010005 3.7e-29 131.3 86 79.1
Cfa005059 Carpinus fangiana HOM05D008028 ORTHO05D010005 4.6e-27 124.4 96 69.8
Sabra09G0092600 Salix brachista HOM05D008028 ORTHO05D010005 1.7e-26 122.5 86 73.3
Haze_02324 Corylus avellana HOM05D008028 ORTHO05D010005 2.3e-26 122.1 96 68.8
QL11p045140 Quercus lobata HOM05D008028 ORTHO05D010005 3.0e-26 121.7 96 68.8
QL11p045265 Quercus lobata HOM05D008028 ORTHO05D010005 3.0e-26 121.7 96 68.8
CiPaw.05G070000 Carya illinoinensis HOM05D008028 ORTHO05D010005 7.3e-25 117.1 92 70.7
Potri.009G120300 Populus trichocarpa HOM05D008028 ORTHO05D010005 7.3e-25 117.1 85 71.8
FvH4_2g09740 Fragaria vesca HOM05D008028 ORTHO05D010005 1.2e-24 116.3 93 66.7
FAN24G2608 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.2e-24 116.3 93 66.7
FAN24G3146 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.2e-24 116.3 93 66.7
Hma1.2p1_0066F.1_g036100 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 1.2e-24 116.3 89 71.9
FAN15G3565 Fragaria x ananassa HOM05D008028 ORTHO05D010005 2.1e-24 115.5 93 66.7
Prupe.8G090300 Prunus persica HOM05D008028 ORTHO05D010005 3.6e-24 114.8 92 67.4
Rhsim11G0180600 Rhododendron simsii HOM05D008028 ORTHO05D010005 3.6e-24 114.8 96 70.8
TAR628G0762 Trochodendron aralioides HOM05D008028 ORTHO05D010005 3.6e-24 114.8 97 62.9
RcHm_v2.0_Chr6g0266031 Rosa chinensis HOM05D008028 ORTHO05D010005 8.1e-24 113.6 97 62.9
FAN20G2021 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.1e-23 113.2 92 66.3
FAN27G0523 Fragaria x ananassa HOM05D008028 ORTHO05D010005 1.4e-23 112.8 93 65.6
Thecc.02G080100 Theobroma cacao HOM05D008028 ORTHO05D010005 6.8e-23 110.5 88 69.3
COL.COLO4_25993 Corchorus olitorius HOM05D008028 ORTHO05D010005 3.4e-22 108.2 95 64.2
Nn5g29713 Nelumbo nucifera HOM05D008028 ORTHO05D010005 3.4e-22 108.2 88 63.6
MD05G1060500 Malus domestica HOM05D008028 ORTHO05D010005 4.4e-22 107.8 92 66.3
MD10G1068400 Malus domestica HOM05D008028 ORTHO05D010005 4.4e-22 107.8 92 65.2
Manes.04G086850 Manihot esculenta HOM05D008028 ORTHO05D010005 4.4e-22 107.8 86 62.8
vmacro17456 Vaccinium macrocarpon HOM05D008028 ORTHO05D010005 1.7e-21 105.9 94 67.0
Nn1g05797 Nelumbo nucifera HOM05D008028 ORTHO05D010005 2.9e-21 105.1 95 58.9
GSVIVG01023830001 Vitis vinifera HOM05D008028 ORTHO05D010005 4.9e-21 104.4 85 68.2
Atru.chr5.3084 Acer truncatum HOM05D008028 ORTHO05D010005 9.2e-20 100.1 94 60.6
Eucgr.G01698 Eucalyptus grandis HOM05D008028 ORTHO05D010005 9.2e-20 100.1 94 59.6
Sed0023664 Sechium edule HOM05D008028 ORTHO05D010005 3.5e-19 98.2 93 55.9
Sabra04G0106000 Salix brachista HOM05D000041 ORTHO05D010005 4.6e-19 97.8 86 65.1
CsaV3_7G000150 Cucumis sativus L. HOM05D008028 ORTHO05D010005 7.8e-19 97.1 97 60.8
ClCG02G004770 Citrullus lanatus HOM05D008028 ORTHO05D010005 1.0e-18 96.7 90 63.3
Ciclev10029664m.g Citrus clementina HOM05D008028 ORTHO05D010005 1.7e-18 95.9 96 56.2
Manes.11G091000 Manihot esculenta HOM05D008028 ORTHO05D010005 3.9e-18 94.7 85 62.4
CANSAT11G2137 Cannabis sativa HOM05D008028 ORTHO05D010005 1.1e-17 93.2 107 53.3
CDE03G0367 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 2.1e-16 89.0 85 56.5
CDE06G1698 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 3.6e-16 88.2 84 56.0
Gohir.A01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 3.6e-16 88.2 92 56.5
EL10Ac9g21688 Beta vulgaris HOM05D008028 ORTHO05D010005 6.2e-16 87.4 95 51.6
arahy.Tifrunner.gnm1.ann1.JRR1U5 Arachis hypogaea HOM05D008028 ORTHO05D010005 1.1e-15 86.7 82 59.8
MELO3C029051.2 Cucumis melo HOM05D008028 ORTHO05D010005 1.8e-15 85.9 67 73.1
PSO541G4922 Papaver somniferum HOM05D008028 ORTHO05D010005 3.1e-15 85.1 91 53.8
Gohir.D01G004200 Gossypium hirsutum HOM05D008028 ORTHO05D010005 2.6e-14 82.0 92 53.3
Gorai.002G005100 Gossypium raimondii HOM05D008028 ORTHO05D010005 2.6e-14 82.0 92 53.3
Potri.004G158800 Populus trichocarpa HOM05D008028 ORTHO05D010005 5.8e-14 80.9 65 70.8
Lj1g0026701 Lotus japonicus HOM05D008028 ORTHO05D010005 7.6e-14 80.5 85 58.8
Hma1.2p1_0851F.1_g228390 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 4.9e-13 77.8 73 58.9
Hma1.2p1_2203F.1_g317070 Hydrangea macrophylla HOM05D008028 ORTHO05D010005 4.9e-13 77.8 73 58.9
Phvul.009G004900 Phaseolus vulgaris HOM05D008028 ORTHO05D010005 6.4e-13 77.4 85 56.5
Glyma.04G009700 Glycine max HOM05D008028 ORTHO05D010005 8.4e-13 77.0 97 51.5
Medtr3g117240 Medicago truncatula HOM05D008028 ORTHO05D010005 1.1e-12 76.6 96 51.0
Glyma.06G009600 Glycine max HOM05D008028 ORTHO05D010005 2.4e-12 75.5 85 51.8
PSO675G1135 Papaver somniferum HOM05D008028 ORTHO05D010005 3.2e-12 75.1 77 53.2
Aqoxy5G01545 Aquilegia oxysepala HOM05D008028 ORTHO05D010005 9.3e-12 73.6 82 48.8
arahy.Tifrunner.gnm1.ann1.04TBQJ Arachis hypogaea HOM05D008028 ORTHO05D010005 9.3e-12 73.6 77 58.4
TPR.G32190 Trifolium pratense HOM05D008028 ORTHO05D010005 2.1e-11 72.4 95 51.6
AUR62011282 Chenopodium quinoa HOM05D008028 ORTHO05D010005 3.5e-11 71.6 62 62.9
A01p00220 Brassica napus HOM05D008028 ORTHO05D010005 7.8e-11 70.5 105 43.8
CDE06G2835 Ceratophyllum demersum HOM05D008028 ORTHO05D010005 7.8e-11 70.5 87 47.1
Psat5g005320 Pisum sativum HOM05D008028 ORTHO05D010005 1.0e-10 70.1 96 51.0
C01p00330 Brassica napus HOM05D008028 ORTHO05D010005 1.3e-10 69.7 107 43.0
BcaNung01280 Brassica carinata HOM05D008028 ORTHO05D010005 1.7e-10 69.3 105 42.9
BolC1t00039H Brassica oleracea HOM05D008028 ORTHO05D010005 1.7e-10 69.3 105 42.9
BraA01t00029Z Brassica rapa HOM05D008028 ORTHO05D010005 2.3e-10 68.9 106 42.5
Thhalv10027119m.g Eutrema salsugineum HOM05D008028 ORTHO05D010005 2.3e-10 68.9 111 45.0
Sp7g36720 Schrenkiella parvula HOM05D008028 ORTHO05D010005 1.1e-09 66.6 108 41.7
AL7G11040 Arabidopsis lyrata HOM05D008028 ORTHO05D010005 3.3e-09 65.1 101 42.6
Carub.0007s0098 Capsella rubella HOM05D008028 ORTHO05D010005 1.3e-08 63.2 103 41.7
A08p23830 Brassica napus HOM05D001347 ORTHO05D001198 3.6e-08 61.6 109 40.4
BraA08t34335Z Brassica rapa HOM05D001347 ORTHO05D001198 3.6e-08 61.6 109 40.4
BcaC01g00281 Brassica carinata HOM05D001347 ORTHO05D001198 4.8e-08 61.2 109 40.4
BcaB03g12242 Brassica carinata HOM05D001347 ORTHO05D001198 6.2e-08 60.8 111 40.5
C03p77600 Brassica napus HOM05D001347 ORTHO05D001198 6.2e-08 60.8 110 40.0
BolC3t20017H Brassica oleracea HOM05D001347 ORTHO05D001198 6.2e-08 60.8 110 40.0
Os01g0739500 Oryza sativa ssp. japonica HOM05D002019 ORTHO05D010005 1.1e-07 60.1 87 40.2
Lalb_Chr23g0265241 Lupinus albus HOM05D008028 ORTHO05D010005 2.4e-07 58.9 95 42.1
Zm00001eb153780 Zea mays HOM05D002019 ORTHO05D010005 1.2e-06 56.6 59 52.5
Zm00001eb293570 Zea mays HOM05D002019 ORTHO05D010005 1.2e-06 56.6 58 51.7


User provided reference genes

Program Settings